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FIGURE 1 in Description Of Mucor Pernambucoensis (Mucorales, Mucoromycota), A New Species Isolated From The Brazilian Upland Rainforest
FIGURE 1. Phylogenetic tree of Mucor constructed using the large subunit (LSU) rDNA sequences. Mortierella parvispora, Backusella Iamprospora, B. grandis, Rhizopus microsporus and Actinomucor elegans were used as an outgroup. Sequences are labeled with their database accession numbers. Support values are from Bayesian inference and maximum likelihood analyses (values above and below of the branches, respectively). The sequence obtained in this study is annotated in boldface.
FIGURE 3 in Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China
FIGURE 3. Result of the pairwise homoplasy index (PHI) test of closely related species using both LogDet transformation and splits decomposition. PHI test results (Φ w) <0.05 indicate significant recombination within the dataset.
FIGURE 5 in Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China
FIGURE 5. Colletotrichum rhombiforme (CFCC 50823) A, B. Upper and reverse sides of cultures on PDA 7 days after inoculation. C. Conidiogenous cells on SNA. D. Seta on PDA. E. Appressorium in slide culture. F. Conidia on SNA. Bars: C–F = 10 μm.
FIGURE 2 in Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China
FIGURE 2. Phylogenetic tree derived from maximum parsimony analysis of the combined ACT, CAL, CHS-1, GAPDH, ITS, TUB2 and GS genes of C. gloeosporioides species complex, using C. boninense MAFF 305972* and C. hippeastri CBS 241.78* as outgroups. Bootstrap values of more than 70 from 1000 replications are shown above the respective branches. Bayesian posterior probabilities (PP) were estimated and clades with PP> 0.95 are marked under the branches. The new species, Colletotrichum yulongense, is in bold.
FIGURE 1 in Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China
FIGURE 1. Phylogenetic tree derived from maximum parsimony analysis of the combined ITS, GAPDH, CHS-1, HIS3 ACT and TUB2 sequences of C. acutatum species complex, using C. orchidophilum CBS 632.80* as outgroup. Bootstrap values of more than 70 from 1000 replications are shown above the respective branches. Bayesian posterior probabilities (PP) were estimated and clades with PP> 0.95 are marked under the branches. The newly sequenced C. rhombiforme is in bold.
FIGURE 4 in Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China
FIGURE 4. Colletotrichum yulongense (from ex-holotype) A, B. Upper and reverse sides of cultures on PDA 7 days after inoculation. C. Conidiogenous cells on SNA. D. Seta on PDA. E. Conidia on SNA. F. Appressoria in slide culture. Bars: C–F = 10 μm.
FIGURE 1 in A new endophytic fungus, Tulasnella phuhinrongklaensis (Cantharellales, Basidiomycota) isolated from roots of the terrestrial orchid, Phalaenopsis pulcherrima
FIGURE 1. Phylogenetic tree derived from maximum likelihood analysis of combined ITS and LSU regions of rDNA genes of 44 sequences. Rhizoctonia obscura and R. solani were used as the outgroups. Numbers above branches are the bootstrap statistics percentages (left) and Bayesian posterior probabilities (right). Branches with bootstrap values ≥ 50% are shown at each branch and the bar represents 0.1 substitutions per nucleotide position. The fungal isolates from this study are in bold. T = type species.
FIGURE 2 in A new endophytic fungus, Tulasnella phuhinrongklaensis (Cantharellales, Basidiomycota) isolated from roots of the terrestrial orchid, Phalaenopsis pulcherrima
FIGURE 2. Tulasnella phuhinrongklaensis CMU-CR41 (holotype). Colony on different media after incubation at 25 °C for two weeks. A. Potato dextrose agar. B. Oat meal agar. C. Malt extract agar. D. Corn meal agar. E. Right-angled branching with septate hyphae (arrows). F. Mycelia stained with 5% DAPI showing binucleate cells (arrows). G. Branched chains of monilioid cells. Scale bars: A–D = 10 mm, E = 10 μm, F = 50 μm, G = 20 μm.
FIGURE 10 in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 10. Calothrix dumus sp. nov., morphological variability and developmental stages. (h) hormogonium, (hd) heteropolar development of hormogonium, (htc-b) basal heterocyte, (htc-i) intercalary heterocytes, (mg) microchaetoid growth, (nc) necridic cell, (s) sheath, (sb) scytonematoid branching. Scale bar 10 μm.
FIGURE 9 in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 9. Brasilonema geniculosis sp. nov., morphological variability and developmental stages. (cs) closed sheath, (os) opened sheath, (ps) purple sheath, (te) tapering end. Scale bars 10 μm.
FIGURE 3. D1-D1 in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 3. D1-D1' helices for B. geniculatum and closet relatives for which ITS sequence data is available a) B. geniculatum HWSC4C Clone IIA, b) B. geniculatum HWSC4C Clone IIB, c) B. lichenoides clone 5A, d) B. sp. RKST-3291 clone MB, e) B. sp. RKST-322 clone C1, f) B. sp. RKST-322 clone c2, g) B. octogenarum HA4186-MV1 clone b7a+p4, h) B. angustatum HA4187-MV1 clone b2+p1f, i) B. angustatum HA4187-MV1 clone b2+p1h.
FIGURE 7. Box B helices for C in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 7. Box B helices for C. dumus and closet relatives for which ITS sequence data is available. a) C. dumus HWSC1B clone A, b) C. dumus HWSC1B clone B, c) C. sp. SEV5-4-c5 clone operon 1, d) C. sp. SEV5-4-c5 clone operon II, e) C. sp. HA4395-MV3 clone B3- 4+P5e, f) C. sp. HA4283-MV5 clone p11B, g) C. sp. HA4283-MV5 clone p11D, h) C. sp. HA4283-MV5 clone p11A, i) C. sp. HA4186- MV5 clone B2+P10ab.
FIGURE 2 in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 2. Maximum likelihood tree of C. dumus and the closest relatives based on 16S rRNA gene sequences. Numbers above the line represent ML values, numbers below MP.
FIGURE 6. D1-D1 in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 6. D1-D1' helices for C. dumus and closet relatives for which ITS sequence data is available. a) C. dumus HWSC1B clone A, b) C. dumus HWSC1B clone B, c) C. sp. SEV5-4-c5 clone operon 1, d) C. sp. SEV5-4-c5 clone operon II, e) C. sp. HA4395-MV3 clone B3-4+P5e, f) C. sp. HA4283-MV5 clone p11B, g) C. sp. HA4283-MV5 clone p11D, h) C. sp. HA4283-MV5 clone p11A, i) C. sp. HA4186-MV5 clone B2+P10ab.
FIGURE 4. Box B helices for B in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 4. Box B helices for B. geniculatum and closet relatives for which ITS sequence data is available a) B. geniculatum HWSC4C Clone IIA, b) B. geniculatum HWSC4C Clone IIB, c) B. lichenoides clone 5A, d) B. sp. RKST-3291 clone MB, e) B. sp. RKST-322 clone C1, f) B. sp. RKST-322 clone c2, g) B. octogenarum HA4186-MV1 clone b7a+p4, h) B. angustatum HA4187-MV1 clone b2+p1f, i) B. angustatum HA4187-MV1 clone b2+p1h.
FIGURE 8. V3 helices for C in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 8. V3 helices for C. dumus and closet relatives for which ITS sequence data is available. a) C. dumus HWSC1B clone A, b) C. dumus HWSC1B clone B, c) C. sp. SEV5-4-c5 clone operon 1, d) C. sp. SEV5-4-c5 clone operon II, e) C. sp. HA4395-MV3 clone B3- 4+P5e, f) C. sp. HA4283-MV5 clone p11B, g) C. sp. HA4283-MV5 clone p11D, h) C. sp. HA4283-MV5 clone p11A, i) C. sp. HA4186- MV5 clone B2+P10ab.
FIGURE 1 in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 1. Maximum likelihood tree of B. geniculatum and the closest relatives based on 16S rRNA gene sequences. Numbers above the line represent ML values, numbers below MP.
FIGURE 5. V3 helices for B in Descriptions of Brasilonema geniculatum and Calothrix dumus (Nostocales, Cyanobacteria): two new taxa isolated from cemetery tombstones
FIGURE 5. V3 helices for B. geniculatum and closet relatives for which ITS sequence data is available. a) B. geniculatum HWSC4C Clone IIA, b) B. geniculatum HWSC4C Clone IIB, c) B. geniculatum HWSC4C Clone IIB second helix, d) B. geniculatum HWSC4C Clone IIB third helix, e) B. lichenoides clone 5A, f) B. sp. RKST-3291 clone MB, g) B. sp. RKST-322 clone C1, h) B. sp. RKST-322 clone c2, i) B. octogenarum HA4186-MV1 clone b7a+p4, j) B. angustatum HA4187-MV1 clone b2+p1f, k) B. angustatum HA4187-MV1 clone b2+p1h.
FIGURE 1 in Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River
FIGURE 1. Map of the study area with an aerial view of the sampling sites: raw and treated water. Coordinate System: UTM zone 22N, SIRGAS 2000.
FIGURE 3 in Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River
FIGURE 3. ML phylogenetic tree based on 16S rRNA gene sequences showing the placement of the Amazonian cyanobacterial strains (in bold). Bootstrap values>70% or Posterior Probabilities>0.90 are indicated below the clade nodes (ML/BI/MP). Each strain sequence is identified by its accession number. The tree was rooted with the outgroup Chloroflexus aurantiacus J-10-fl (NR_074263), which was pruned from the tree for clarity. (T) refers to type strains according to CyanoType (Ramos et al. 2017).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.