Find research datasets worth reusing

Datasets related to publication "Improving the Resolution of Comb-Based Frequency Measurements Using a Track-And-Hold Amplifier"

The zip folder contains datasets related to paper  "Improving the Resolution of Comb-Based Frequency Measurements Using a Track-And-Hold Amplifier",  https://doi.org/10.1103/PhysRevApplied.18.064010, by M. Risaro et al., Phys. Rev. Applied 18, 064010 (2022). Datasets are subdivided according to Figure number (context is given in the linked paper). Description txt files are provided where data are not self-expanatory

Data underlying publication: Ambient precipitation determines the sensitivity of soil respiration to precipitation treatments in a marsh

This dataset contains ambient climate data, soil three-parameter data, vegetation biomass data, soil respiration and its autotrophic and heterotrophic components collected from 2016-2021 in a field precipitation changes experiment established at the Yellow River Delta Ecological Experiment Station of the Chinese Academy of Sciences.   This study aims to investigate whether ambient climate affects the sensitivity of soil respiration to long-term precipitation treatments and the underlying mechanisms. Briefly, the relationship between net radiation, air temperature and annual precipitation in the ambient climate and the sensitivity of soil respiration to precipitation treatments was investigated to explore if the ambient climate affects the sensitivity of soil respiration to long-term precipitation treatments. The mechanism underlying the above results was also explored through the relationship between the sensitivity of soil and vegetation factors and the sensitivity of soil respiration to precipitation treatments.   For the process of data collection: first, soil temperature was collected using soil sensors. Soil moisture and soil conductivity data. Secondly, aboveground biomass and belowground biomass data of vegetation were collected using the harvesting method. Finally, soil respiration and its autotrophic and heterotrophic components data were collected using LI-8100 and LI-7810 infrared gas analyzers (Li-Cor, Inc., Lincoln, NE, USA).

opencc-by-nc-nd-4.0Dec 2022View details →

The Rise of Ethical Discussions on Human Remains in Scientific Publications

Presentation Given at the 23rd Annual Conference of the British Association for Biological Anthropology and Osteoarchaeology (BABAO) Abstract (250 words) Recent years saw a growing interest in ethical considerations associated with excavating, analysing, and curating human remains, leading to a publication increase. This paper explores the reference to ethical issues associated with human remains, aiming to assess emergent trends and significant concerns. Data were retrieved from an online publications database (Dimensions), using a Boolean query to search titles and abstracts mentioning topics related to Ethics and Human Remains. The analysis considered the year of publication, source data, and relevant terms used in the publications aiming to explore emerging patterns. A total of 181 publications were identified, published between 1990 and (July) 2022, with an increase in publications since 2014. Most were published in journals (n=111) the remaining in books and encyclopedias. The most co-occurrence terms were “Archaeology”, “Museum”, “Study”, “Use” and “Collection”. Publication trends showed a higher focus on ethics within archaeology. Not only archaeology was one of the most used terms in titles and abstracts, but archaeological journals had the higher number of publications (3 to 5 papers) on ethics. Although most papers were published in a wide diversity of journals, those usually featured only one or two publications. The most cited article, also with a high atlmetric alternative score, was in aDNA published in 2018. Showing an increasing interest in aDNA by scientists and the public. Results suggest the need for the continuing discussion of ethical matters regarding human remains in biological anthropology, and for journals to feature a higher number of publications on the matter. Video Also available @<a href="https://www.youtube.com/watch?v=qhvjDnRo48Y">https://www.youtube.com/watch?v=qhvjDnRo48Y</a>

Genome annotation associated with the publication "Chromosome-level genome assembly of the Cape cliff lizard (Hemicordylus capensis)"

Genome annotation associated with the publication "Chromosome-level genome assembly of the Cape cliff lizard (Hemicordylus capensis)" rHemCap1.1.gff3 - Genome annotation in GFF3 format rHemCap1.1.proteins.fa - Multi-fasta file of protein coding genes rHemCap1.1.cds-transcripts.fa - Multi-fasta file of transcripts (CDS)

Dataset for publication "Fate of charge order in overdoped La-based cuprates"

Dataset providing the sourcedata of the main figures in the publication "Fate of charge order in overdoped La-based cuprates".

Code and dataset for publication "Laser Wakefield Accelerator modelling with Variational Neural Networks"

Data and code for reproducing figures in published work.   High Power Laser Science and Engineering <a href="https://doi.org/10.1017/hpl.2022.47">https://doi.org/10.1017/hpl.2022.47</a> Code used various python packages including tensorflow. Conda environment was created with (on 6th Jan 2022) conda create --name tf tensorflow notebook tensorflow-probability pandas tqdm scikit-learn matplotlib seaborn protobuf opencv scipy scikit-image scikit-optimize Pillow PyAbel libclang flatbuffers gast --channel conda-forge

IDSL.CSA FSDBs for publicly available spectra from NIST and MoNA databases

IDSL.CSA fragmentation spectra databases (FSDBs) for publicly available spectral databases.  FSDB is a R list object with elements describing various features to speed up libraries searches.

Spectral data associated to the publication: "VIS spectroscopy of NaCl - water ice mixtures irradiated with 1 and 5 keV electrons under Europa's conditions: Formation of colour centres and Na colloids " by R. Cerubini et al. (Icarus 379, 2022)

This is the complete set of experimental VIS reflectance data collected by R. Cerubini and co-authors for the article "VIS spectroscopy of NaCl - water ice mixtures irradiated with 1 and 5 keV electrons under Europa's conditions: Formation of colour centres and Na colloids" published in Icarus 379 (2022). doi: https://doi.org/10.1016/j.icarus.2022.114977. The article itself is published in open-access and provides the methodology for the spectral aquisitions, discussion of the errors and uncertainties, analysis of the spectra and implications for the composition of Solar System surfaces. The data are contained in ASCII files (columns separated by comma). The first column is the wavelength (in micrometers) and the other columns contain the reflectance data (in unit of reflectance factor). The different compositions are indicated in the filenames and correspond directly to the figures in the published paper.

Dataset for publication: The Land-Atmosphere Feedback Observatory: A New Observational Approach for Characterizing Land-Atmosphere Feedback

Here are zip files containing the data sets for the figures of the publication "The Land-Atmosphere Feedback Observatory: A New Observational Approach for Characterizing Land-Atmosphere Feedback" by Späth et al., 2023, GI, doi: 10.5194/gi-12-25-2023.Data collected from the Halo Doppler lidar (DL), Atmospheric Raman Temperature and HUmidity Sounder ARTHUS, scanning differential absorption lidar (DIAL), Eddy-Covariance stations (EC) and the Water and Temperature Sensor Network (WaTSeN) of the Land-Atmisphere Feedback Observatory LAFO at University of Hohenheim, Stuttgart, Germany. The data cover the temporal period as presented in the figures in Späth et al., 2023, GI, doi: 10.5194/gi-12-25-2023.

Dataset for publication Chougan M., Ghaffar S.H., Nematollahi B., Sikora P., Dorn T., Stephan D., Albar A., Al-Kheeta M.J. Effect of natural and calcined halloysite clay minerals as low-cost additives on the performance of 3D-printed alkali-activated materials. Materials and Design (2022) 223, 111183

Open dataset for publication  Chougan M., Ghaffar S.H., Nematollahi B., Sikora P., Dorn T., Stephan D., Albar A., Al-Kheeta M.J. Effect of natural and calcined halloysite clay minerals as low-cost additives on the performance of 3D-printed alkali-activated materials. Materials and Design (2022) 223, 111183. <a href="https://doi.org/10.1016/j.matdes.2022.111183">https://doi.org/10.1016/j.matdes.2022.111183</a> File 1 - FTIR - data of raw and calcined material - *.opj (Origin) File 2 - Mechanical performance print vs cast - *.opj (Origin) File 3 - Mechanical performance - *.opj (Origin) File 4 - TGA and XRD - data of raw and calcined material  - *.opju

openother-openApr 2020View details →

Dataset related to the publication "Invar-based refractometer for pressure assessments"

The data set consists of; The published paper, all figures that present measurement or simulation data in .png and .fig format and the underlying data plotted in the figures in text format.  The published plots were generated from the fig files. The text files were generated by reading the plotted data from the fig files. The files are named Fig_XX were XX corresponds to the figure number in the publication.  The format of the text file is as follows. Before every data set there is a header consisting of; The number of the subplot where the data is plotted (Plot: XX), the number of the data set in the sub plot (DataSet: XX), and the color of the line or marker in the plot (Color: XX). The description of what each color represents can be found in the publication.

Supplementary dataset to the publication by Hieronymi et al.: "Ocean color atmospheric correction methods in view of usability for different optical water types", Frontiers in Marine Science (under review, submitted 22 Dec 2022)

The dataset is an annex to the publication (under review, submitted 22 Dec 2022): Martin Hieronymi, Shun Bi, Dagmar Müller, Eike M Schütt, Daniel Behr, Carsten Brockmann, Carole Lebreton, François Steinmetz, Kerstin Stelzer and Quinten Vanhellemont: "Ocean color atmospheric correction methods in view of usability for different optical water types", Frontiers in Marine Science. The data were created to compare the results of different atmospheric correction methods for ocean (water) color imagery. The dataset includes ten modified ESA/EUMETSAT Copernicus Sentinel-3 OLCI satellite scenes from optically diverse sea areas worldwide. The NetCDF files are optimized for visualization in the ESA Sentinel Application Platform (SNAP) and especially the Spectrum View. The data include original OLCI Level-1B top-of-atmosphere radiances recorded by the sensor and the results from five different atmospheric correction methods, i.e., spectral remote-sensing reflectance at 16 OLCI bands. The atmospheric correction methods compared are <ol> <li> IPF (Collection 3, the standard method), </li> <li> C2RCC (v1.7 including IPF gains; Brockmann et al. [2016]), </li> <li> A4O (v0.23 (2022-01-19); a novel method by Hieronymi et al.), </li> <li> POLYMER (v4.14 (2021-12-17); Steinmetz et al. [2011]), and </li> <li> ACOLITE-DSF (v2022-10-25.0; Vanhellemont and Ruddick [2021]). </li> </ol> The original flags supplied in each case are also provided. <table> <tbody> <tr> <td> # </td> <td> Sensor-Date-UTC </td> <td> Region </td> <td> Special features </td> </tr> <tr> <td> 1 </td> <td> S3A-20160720-092821 </td> <td> Barents Sea </td> <td> High latitudes, bloom of coccolithophores </td> </tr> <tr> <td> 2 </td> <td> S3A-20160720-093421 </td> <td> North Sea, Wadden Sea </td> <td> Moderately to extremely scattering waters, tidal areas, in situ data </td> </tr> <tr> <td> 3 </td> <td> S3A-20170114-130626 </td> <td> South Atlantic Ocean, Rio de la Plata estuary </td> <td> Extremely scattering waters, clear oceanic waters, sun glint, South Atlantic Anomaly </td> </tr> <tr> <td> 4 </td> <td> S3A-20170527-015236 </td> <td> Yellow Sea, East China Sea, Yangtze, Lake Taihu </td> <td> Extremely scattering waters, tidal areas, large rivers, absorbing aerosols, sun glint </td> </tr> <tr> <td> 5 </td> <td> S3A-20170529-092334 </td> <td> Mediterranean Sea </td> <td> Large areas with clear waters, sun glint </td> </tr> <tr> <td> 6 </td> <td> S3A-20170913-080730 </td> <td> Black Sea, Aegean Sea </td> <td> Clear and absorbing waters </td> </tr> <tr> <td> 7 </td> <td> S3A-20180715-093613 </td> <td> North Sea, Baltic Sea </td> <td> Intense bloom of cyanobacteria partly with scum </td> </tr> <tr> <td> 8 9 </td> <td> S3A-20200601-092517 S3B-20200601-084546 </td> <td> North Sea, Baltic Sea </td> <td> Inter-comparison of S3A and S3B with different observation angles, absorbing waters </td> </tr> <tr> <td> 10 </td> <td> S3B-20200406-093801 </td> <td> North Sea, Baltic Sea </td> <td> High OWT diversity </td> </tr> </tbody> </table>

Data set of HRQoL of hepatitis C patients visiting public hospitals of Lahore, Pakistan

The attached file contains the data set for Health related quality of life among hepatitis C patients: A cross-sectional study conducted in public hospitals of Lahore, Pakistan study.

Intermediary and supplemental data for publication "Heterogenous circulating miRNA changes in ME/CFS converge on a unified cluster of target genes and may be a result of modulation by latent herpesviruses: A computational analysis"

Intermediary and supplemental data for publication "Heterogenous circulating miRNA changes in ME/CFS converge on a unified cluster of target genes and may be a result of modulation by latent herpesviruses: A computational analysis"

opencc-zeroFeb 2023View details →

dryad32/100

Publications on snake biology

The trajectory of biological research may be affected by historical factors (such as the study species and locations of influential researchers) as well as by underlying biological dimensions (such as species diversity and location of potential study taxa). Such influences on research focus can be clarified by examining the topics of published papers. Based on 93,816 scientific papers published on snake biology since 1804 (from the Web of Science), we found a non-random distribution of research output among snake clades, fields of research, and geographic locations, and strong changes through time in overall research effort as well as in the foci of that work. Snakes are the subjects of more scientific papers than are other lineages of reptiles, but research on turtles has been increasing faster, and research effort per species is higher for smaller reptile lineages. Studies on systematics and taxonomy dominated snake research until the mid-20th century when this field was overtaken by studies of venoms, ecology, morphology, and physiology. Colubrids and vipers have been the most popular study taxa, reflecting a concentration of research in continents (Europe and the Americas) where these taxa are diverse and abundant. Research effort on vipers increased from around 1920, reflecting advances in antivenom and radiotelemetry technology. Blindsnakes and smaller Families remain relatively neglected in absolute terms. Numbers of papers per species are tenfold greater for North American and European snakes than in most other regions. We attribute these non-random patterns to temporal and spatial variation in research priorities, methodology, and the availability of scientific infrastructure.

"An atlas of color-selected quiescent galaxies at z>3 in public JWST fields" (Supplementary material)

The files are organized as follows: 0) "readme_atlas_jwst_paper.txt" This file describes the content of the file "supplementary_atlas_jwst_paper.tar" containing supplementary figures and tables for the manuscript "An atlas of color-selected quiescent galaxies at z>3 in public JWST fields" by Valentino, Brammer, Gould et al. (2023, ApJ). The information is also provided here below. 1) supplementary_figures/ 1.1) Depth in NIRCam/F150W, F200W, F277W, and F356W equivalent to Figure A.1 in Appendix A: <ul> <li>f150w_flux_aper_1_observed_magnitude_sn_5.0_completeness_kde_allfields.png</li> <li>f200w_flux_aper_1_observed_magnitude_sn_5.0_completeness_kde_allfields.png</li> <li>f277w_flux_aper_1_observed_magnitude_sn_5.0_completeness_kde_allfields.png</li> <li>f356w_flux_aper_1_observed_magnitude_sn_5.0_completeness_kde_allfields.png</li> </ul> These figures are also collected in a Figure Set available on the journal webpage. 1.2) Comoving number densities of UVJ-selected galaxies falling in the standard selection box by Williams+2009 and not accounting for the uncertainties on colors: <ul> <li>uvj_number_densities_mass_bins_strict_nouncertainties.png</li> </ul> The purple and green colors mark the p(z) of individual robust "standard" UVJ quiescent candidates with M* ≥ 1010.6 M⊙ and 109.5 ≤ M* < 1010.6 M⊙, respectively. The p(z) are normalized by their area (∫z p(z) dz = 1). The sky coverage of each field is as labeled. We included the effect of gravitational lensing at these redshifts in the calculation of the areas around galaxy clusters (Sunrise, SMACS0723), for which the masses should be intended as observed (not delensed). The comoving number densities in units of 10-5 Mpc-3 obtained from the integration of p(z) within the 3 < z < 4, 4 < z < 5, and 5 < z < 6.5 bins marked by dotted lines are reported. The errors mark the 68% Poissonian confidence intervals. Estimates of the uncertainties from bootstrapping are within brackets. The first and second rows indicate n in the 109.5 ≤ M* < 1010.6 M⊙ and M* ≥ 1010.6 M⊙ bins, respectively. 2) uvj/ Folder containing the SEDs (seds/) and positions in the UVJ diagram (uvj_single/) of the UVJ-selected samples described in the manuscript. The latter include both the initial pool of candidates and the visually selected sample. Tables containing the basic properties of both samples described in the text are available in fits and html formats. By downloading the folder and clicking on the .html tables, the reader can visualize the content in a web browser. This feature allows to automatically visualize the properties, SEDs, position in the UVJ diagram, and generate RGB cutouts in the SW and LW NIRCam channels on-the-fly. The latter operation takes a few seconds. A .reg file compatible with DS9 is provided for the visually selected sample. The coordinates are aligned with GAIA DR3. 3) nuvuvj/ The content is similar to that of the uvj/ folder, but for the NUVUVJ selection in Gould, Brammer, Valentino et al. (2023, ApJ). Separate tables for "robust" and "probable" samples before and after the visual inspections are distributed in .fits and .html format. 4) carnall22_selection/ The content is similar to that of the nuvuvj/ folder, but for the sample selected by Carnall, McLeod, McLure et al. 2023 (2023MNRAS.tmp..383C, arXiv:2208.00986). The information is provided to allow for a rapid comparison with this work. For further information or details, please write at: francesco.valentino@eso.org.

X-ray scattering datasets associated with the publication "Molecular Mobility of Polynorbornenes with Trimethylsiloxysilyl side groups: Influence of the Polymerization Mechanism"

X-ray scattering datasets for samples described in the 2022 publication "Molecular Mobility of Polynorbornenes with Trimethylsiloxysilyl side groups: Influence of the Polymerization Mechanism". This dataset includes both raw and processed X-ray scattering data for samples APTCN and MPTCN, alongside background measurement files (BKG).

Raw data belonged to the study of CV-SDG publications

Raw data belonging to the study of CV-SDG publications and countries

Dataset for publication 'Automated g-ratio calculation of sciatic nerve bundles in mice – a new approach for optical microscopy '

Dataset corresponding to the publication Automated g-ratio calculation of sciatic nerve bundles in mice – a new approach for optical microscopy intended for publication at Nature Scientific Reports. This repository contains the training, validation and test data.

Model output publication 'Mechanisms of salt overspill at estuarine network junctions explained with an idealized model'

The model output for the publication in JGR: Oceans titled 'Mechanisms of salt overspill at estuarine network junctions explained with an idealized model'