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Supplementary material 1 from: Lemaitre R (2017) Discovery of a new species of hermit crab of the genus Pylopaguropsis Alcock, 1905 from the Caribbean: "den commensal" or "cleaner"? (Crustacea, Anomura, Paguridae). ZooKeys 646: 139-158. https://doi.org/10.3897/zookeys.646.11132
Photograph of live ovigerous female of Pylopaguropsis mollymullerae sp. n. stretching out from gastropod shell : Explanation note: Color photograph of Pylopaguropsis mollymullerae sp. n. taken by E Muller (dive 4125 095a) at dive site "Front Porch": ovigerous female, not collected.
Supplementary material 1 from: Cimarelli L, Giuliodori A, Brandi A, Adamkiewicz K, Spurio R, Fabbretti A (2017) Screening an Archetypal Collection of Microorganisms for the Presence of Unexplored Antimicrobial Compounds. BioDiscovery 20: e10763. https://doi.org/10.3897/biodiscovery.20.e10763
Screening an archetypal collection of microorganisms for the presence of unexplored antimicrobial compounds
Supplementary material 1 from: Talamas EJ, Johnson NF, Buffington ML, Dong R (2016) Archaeoteleia Masner in the Cretaceous and a new species of Proteroscelio Brues (Hymenoptera, Platygastroidea). In: Talamas EJ, Buffington ML (Eds) Advances in the Systematics of Platygastroidea. Journal of Hymenoptera Research 56: 241-261. https://doi.org/10.3897/jhr.56.10388
URI table of HAO morphological terms : Explanation note: This table lists the morphological terms used in this publication and
Supplementary material 1 from: Palasio RGS, Guimarães MCA, Ohlweiler FP, Tuan R (2017) Molecular and morphological identification of Biomphalaria species from the state of São Paulo, Brazil. ZooKeys 668: 11-32. https://doi.org/10.3897/zookeys.668.10562
Figure S1 : Explanation note: ML and NJ trees generated with MEGA 6 software from the alignment of the 104 Biomphalaria COI sequences.
Supplementary material 3 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Krona chart : Explanation note: Interactive Krona chart for visualizing the taxonomic distribution of annotated BMS sequences down to order level. Sequences classified as Fungi sp. (36.4%) or non-fungal (0.9%) were excluded from this dataset.
Supplementary material 2 from: van Nieukerken E, Doorenweerd C, Hoare R, Davis D (2016) Revised classification and catalogue of global Nepticulidae and Opostegidae (Lepidoptera, Nepticuloidea). ZooKeys 628: 65-246. https://doi.org/10.3897/zookeys.628.9799
BOLD TaxonID Tree of the dataset Lepidoptera - Nepticuloidea of the World 2016 [DS-NEPCAT] : Explanation note: A Neighbor joining tree of COI sequences, with Kimura 2 Parameter as distance model for sequences linger than 200 bp, 3203 records.
Supplementary material 6 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Data availability : Explanation note: NEXUS formatted single-gene and concatenated nucleotide sequence alignments.
Supplementary material 1 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Keywords used to identify fungal sequences from the built environment in the INSDC : Explanation note: Keywords used to identify fungal sequences from the built environment in the INSDC.
Supplementary material 1 from: van Nieukerken E, Doorenweerd C, Hoare R, Davis D (2016) Revised classification and catalogue of global Nepticulidae and Opostegidae (Lepidoptera, Nepticuloidea). ZooKeys 628: 65-246. https://doi.org/10.3897/zookeys.628.9799
Specimen data for Catalogue of Nepticuloidea with BOLD data : Explanation note: The 213 records comprise specimens that have either been cited briefly or completely in the Notes, or have been used more implicitly for the texts and figures. Records are listed alphabetically by species, country, stateProvince, AdminDivision2, AdminDivision3, Locality.
Supplementary material 5 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Table 3 : Explanation note: Taxa from Miller et al. (2013) sampled in this study with updated tribal and subtribal classification of Miller and Bergsten (2014).
Supplementary material 2 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Figure 2 : Explanation note: Majority rule consensus of 1,000 bootstrap replicates performed on single gene datasets. Bootstrap percentage given for clades recovered with more than 50% support.
Supplementary material 1 from: Kanda K, Gomez AR, Van Driesche R, Miller KB, Maddison DR (2016) Phylogenetic placement of the Pacific Northwest subterranean endemic diving beetle Stygoporus oregonensis Larson & LaBonte (Dytiscidae, Hydroporinae). ZooKeys 632: 75-91. https://doi.org/10.3897/zookeys.632.9866
Figure 1 : Explanation note: Maximum likelihood trees for single gene datasets. Scale bar indicates the expected substitutions per site as estimated by RAxML.
Supplementary material 2 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Annotations made during the workshop : Explanation note: The annotations made during the workshop shown with original INSDC data. For the BMS, we targeted nine MIxS-BE items plus country of collection, host of collection, host association, and a general "Comment" field. For the OMS, we targeted country of collection, host of collection, host association, and a general "Comment" field.
Supplementary material 2 from: Hershler R, Liu H-P, Babbitt C, Kellogg MG, Howard JK (2016) Three new species of western California springsnails previously confused with Pyrgulopsis stearnsiana (Caenogastropoda, Hydrobiidae). ZooKeys 601: 1-19. https://doi.org/10.3897/zookeys.601.9040
Specimens of Pyrgulopsis stearnsiana sensu stricto that were examined as part of this study : Explanation note: All material is from California.
Supplementary material 2 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Table S2 : Explanation note: Museum IDs and collection data for specimens of Ammodytes tobianus used for morphological analyses only.
Supplementary material 1 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Table S1 : Explanation note: Supplementary metadata for specimens used for both morphological and genetic analyses; Museum and Sample IDs are specimen identifiers, BOLD Process IDs are unique codes automatically generated for each record on BOLD, GenBank Accession NOs represent sequence identifiers.
Supplementary material 1 from: Gebauer R, Řepka R, Šmudla R, Mamoňová M, Ďurkovič J (2016) Anatomical and morphological spine variation in Gymnocalycium kieslingii subsp. castaneum (Cactaceae). PhytoKeys 69: 1-15. https://doi.org/10.3897/phytokeys.69.8847
Table S1. Coefficient of variation (CV) of spine and fiber traits within areoles. : Explanation note: The number of spines within an areole is given in brackets (n). Depicted are CV values above 15%. See Table 1 for explanation of spine and fiber traits.
Supplementary material 1 from: Mabidi A, Bird MS, Perissinotto R, Rogers DC (2016) Ecology and distribution of large branchiopods (Crustacea, Branchiopoda, Anostraca, Notostraca, Laevicaudata, Spinicaudata) of the Eastern Cape Karoo, South Africa. ZooKeys 618: 15-38. https://doi.org/10.3897/zookeys.618.9212
: Appendix 2: Large branchiopod species found in November 2014 and April 2015 in the 15 study sites included in the survey. a = present only in April; n = present only in November; an = present during both periods; 0 = absent during both periods.
Supplementary material 6 from: Agnarsson I, LeQuier SM, Kuntner M, Cheng R-C, Coddington JA, Binford G (2016) Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. ZooKeys 625: 25-44. https://doi.org/10.3897/zookeys.625.8729
Table S3 : Explanation note: Genetic and Geographic distances among all ingroup specimens used in generating Figure 2.
Supplementary material 5 from: Agnarsson I, LeQuier SM, Kuntner M, Cheng R-C, Coddington JA, Binford G (2016) Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. ZooKeys 625: 25-44. https://doi.org/10.3897/zookeys.625.8729
Table S2 : Explanation note: Results of Fst and Kxy (average number of nucleotide differences) analyses among specimens from all islands and mainland. The Cuban specimens, here described as a new species, stand out in both analyses indicating genetic isolation and divergence.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.