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FIGURE 2 in Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River
FIGURE 2 Microphotographs of the Amazonian cyanobacterial strains: A) Alkalinema aff. pantanalense LEGE 15484, B) Limnothrix cf. planctonica LEGE 15485, C) Leptolyngbya boryana LEGE 15486, D) Cephalothrix lacustris LEGE 15487, E) Phormidium sp. LEGE 15488, F) Pseudanabaena cf. galeata LEGE 15489, G) P. cf. galeata LEGE 15490, H) P. cf. galeata LEGE 15491, I) Cephalothrix lacustris LEGE 15492, J) C. lacustris LEGE 15493; K) unidentified Nostocales LEGE 15494, L) unidentified Nostocales LEGE 15495, M) unidentified Nostocales LEGE 15496, and N) Limnothrix cf. planctonica LEGE 15497.
FIGURE 5 in Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem
FIGURE 5. Neighbor–joining tree based on nifH gene sequences of Marileptolyngbya sina SCSIO T-2 and Salileptolyngbya diazotrophicum SCSIO 43686. Synechocystis sp. WH8501 was used as an outgroup. The studied cyanobacterial strains were in bold font. A bootstrap test involving 1000 resamplings was performed. Bar, 0.05 substitution rate (K ) units.
FIGURE 4 in Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem
FIGURE 4. Phylogenetic tree based on 16S rRNA gene sequences using the Bayesian algorism, showing the positions of strains Marileptolyngbya sina SCSIO T-2 and Salileptolyngbya diazotrophicum SCSIO 43686. Gloeobacter violaceus strain PCC 7421 was used as an outgroup. The studied starins were labelled in bold. Only posterior probabilities ≥ 0.50 were indicated. Bar, 0.03 substitution rate (Knuc) units.
FIGURE 2 in Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem
FIGURE 2. Scanning electron micrographs of Marileptolyngbya sina SCSIO T-2 and Salileptolyngbya diazotrophicum SCSIO 43686. a–e: SCSIO T-2; f–i: SCSIO 43686. Scale bars: a, g=10 μm; b–f, i= 5μm; h=1μm.
FIGURE 1 in Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem
FIGURE 1. Light micrographs of Marileptolyngbya sina SCSIO T-2 and Salileptolyngbya diazotrophicum SCSIO 43686 (100X). a–c: SCSIO T-2; d–f: SCSIO 43686. a. unbranched and breakage of filaments. b. rounded terminal cell, sometimes extended. c. entangled filements. d. wavy filaments. e. firm sheath contained uniseriate and unbranched trichome. f. filaments reproducing by hormogonia. Scale bars= 10 μm.
FIGURE 3 in Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem
FIGURE 3. Transmission electron micrographs of Marileptolyngbya sina SCSIO T-2 and Salileptolyngbya diazotrophicum SCSIO 43686. a–b. Cross section view of SCSIO T-2. c–d. Longitudinal section view of SCSIO T-2. e–g. Cross section view of SCSIO 43686. h–i. Longitudinal section view of SCSIO 43686. Scale bars: a–b, e–f, h–i= 200μm; c–d= 500 μm; f= 100μm.
FIGURE 6 in Marileptolyngbya sina gen. nov., sp. nov. and Salileptolyngbya diazotrophicum gen. nov., sp. nov. (Synechococcales, Cyanobacteria), species of cyanobacteria isolated from a marine ecosystem
FIGURE 6. Transcript secondary structure of 16S–23S ITS region of Marileptolyngbya sina SCSIO T-2, Salileptolyngbya diazotrophicum SCSIO 43686 and representative sister taxa. (a–e) D1–D1' helix. (f–j) Box B helix. (k–o) V3 helix. a, e, f= SCSIO T-2; b, f, j= SCSIO 43686; c, g, k= Nodosilinea nodulosa UTEX 2910; d, h, l= Leptolyngbya boryana PCC 6306; e, j, o= Haloleptolyngbya alcalis KR2005/106.
FIGURE 1 in Pilaira australis sp. nov. (Mucorales, Mucoromycota) isolated from emu faeces in Australia
FIGURE 1. Comparison of DNA sequences at two genetic loci supports P. australis as a distinct species with the Pilaira genus. (A) Phylogeny using the ITS by maximum likelihood based on the Tamura 3-parameter model. The tree with the highest log likelihood is shown (-2476.0688). (B) Phylogeny using the pyrG gene fragment by maximum likelihood method based on the Tamura 3-parameter model. The tree with the highest log likelihood is shown (-1674.0526). In both (A) and (B) the trees are drawn to scale, with branch lengths measured in the number of substitutions per site. The bootstraps values provided were generated with 1000 replicates.
FIGURE 2 in Pilaira australis sp. nov. (Mucorales, Mucoromycota) isolated from emu faeces in Australia
FIGURE 2. Morphological features of P. australis. Colonies growing on potato dextrose agar, becoming yellow in colour and emanating white sporangiophores that exhibit positive phototropism that collapse once several centimetres tall (A). The columella is visible at the base of the developing sporangium (B). Eventually the lower surface of the columella collapses inwards (C) to form a mature sporangium (D, F, G, H). Spores are elongated in shape (E, H, I). The outer surface of the sporangium is covered with small spikes (G and H). The spores lack surface ornamentation (H and I). B to D dissecting microscope, E DIC image from a compound microscope, F to I SEM images. Scales bares represent 300 μm B to D, 50 μm E, 100 μm F, 10 μm G, 20 μm H and 5 μm I.
FIGURE 1 in Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico
FIGURE 1. Sampling site at the Archaeological zone of Cañada de la Virgen. A. Aerial view of the Complex A (image taken from Google Maps, 2016). B. South drainage channel of the Complex A central-courtyard. C. Complex A central-courtyard. Red arrows indicate the specific sampling point.
FIGURE 5 in Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico
FIGURE 5. Unrooted tree of Nodosilinea strains based on Bayesian Analysis of 19 sequences (562 DNA positions, 114 coded indels). Bootstrap values from the parsimony analysis (562 DNA positions, gaps coded as a fifth base) are mapped onto the nodes in which the analyses were in agreement.
FIGURE 6 in Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico
FIGURE 6. Secondary structure of conserved domains of the 16S-23S ITS regions for 8 representative strains of Nodosilinea. A–H: D1- D1' helices; I–P: Box-B helices; Q: V3 helix (all 19 strains). Strain labels in the bottom row apply to the D1-D1' helices in the first row. Bases differing from those in N. chupacuarensis are indicated by hollow circles next to the differing bases.
FIGURE 3 in Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico
FIGURE 3. SEM micrographs of Nodosilinea chupicuarensis. A. Mature uniseriate filament forming a tight spiral. B. Amplification of a spiral. C. Coiled filaments.
FIGURE 2 in Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico
FIGURE 2. Main characteristics of Nodosilinea chupicuarensis. A-C. Mature filaments forming loose to tight spirals. D. A characteristic nodule (arrow). E. Multiseriate filament. F. Filaments with mature, elongated end cells (arrows). All figures to same scale, scale = 10 μm.
FIGURE 4 in Nodosilinea chupicuarensis sp. nov. (Leptolyngbyaceae, Synechococcales) a subaerial cyanobacterium isolated from a stone monument in central Mexico
FIGURE 4. Phylogenetic position of Nodosilinea chupicuarensis (denoted with an arrow) in a Bayesian Analysis (285 OTUs, 1222 positions), with support values on nodes representing BA posterior support/ML bootstrap support/MP bootstrap support, respectively. The uncollapsed tree from which this figure was derived appears in supplemental materials.
FIGURE 1 in Alternaria vicatiae sp. nov. (Ascomycota: Pleosporaceae) Isolated from Vicatia thibetica in China
FIGURE 1. Phylogenetic tree of Alternaria vicatiae and its related species based on the combined dataset of the ITS, GAPDH, EF-1α, Alt a1 and RPB2 gene sequences. The Bayesian posterior probabilities>0.65 (PP), maximum likelihood and maximum parsimony bootstrap support values>65 (BS) are respectively given at the nodes (PP/BS). Examined strains are in bold.
FIGURE 2 in Alternaria vicatiae sp. nov. (Ascomycota: Pleosporaceae) Isolated from Vicatia thibetica in China
FIGURE 2. Morphological characteristics of Alternaria vicatiae. A: plant samples in field; B: colony on PDA for 7 days at 25℃; C: conidiophore; D: sporulation pattern; E: conidia. Scale bars =50 μm.
FIGURE 8 in New cyanobacterium Nodosilinea svalbardensis sp. nov. (Prochlorotrichaceae, Synechococcales) isolated from alluvium in Mimer river valley of the Svalbard archipelago
FIGURE 8. Color-coded secondary structure of Box-B helices and alignment of the selected set of sequences of Nodosilinea. The black color with white letters indicates conservative regions, gray areas denotes variable parts. Notice that sequences of the terminal loop are placed in the boxes within the alignment
FIGURE 6. Bayesian 16S-23S in New cyanobacterium Nodosilinea svalbardensis sp. nov. (Prochlorotrichaceae, Synechococcales) isolated from alluvium in Mimer river valley of the Svalbard archipelago
FIGURE 6. Bayesian 16S-23S ITS rRNA phylogeny showing the position of the Nodosilinea svalbardensis. Symbol "-" show support less than 50% on representative nodes. Taxa in the quotation mark needs to be revised. Note type species of Nodosilinea, N. nodulosa UTEX 2910.
FIGURE 7 in New cyanobacterium Nodosilinea svalbardensis sp. nov. (Prochlorotrichaceae, Synechococcales) isolated from alluvium in Mimer river valley of the Svalbard archipelago
FIGURE 7. Color-coded secondary structure of D1-D1' helices of the 16S-23S ITS region and its alignment for 5 representative species of Nodosilinea. Circles near N. svalbardensis indicate differences with closely related N. bijuigata.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.