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Supplementary material 2 from: Agnarsson I, LeQuier SM, Kuntner M, Cheng R-C, Coddington JA, Binford G (2016) Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. ZooKeys 625: 25-44. https://doi.org/10.3897/zookeys.625.8729
Figure S2 : Explanation note: Bayesian phylogeny based on analysis in MrBayes using the two nuclear genes.
Supplementary material 1 from: Casalla R, Scheffrahn R, Korb J (2016) Cryptotermes colombianus a new drywood termite and distribution record of Cryptotermes in Colombia. ZooKeys 596: 39-52. https://doi.org/10.3897/zookeys.596.9080
List of Cryptotermes of the world and sequences reported in the NCBI for mtDNA genes : Explanation note: Hits for mtDNA sequences to COII, 12S, 16S and CytB in Cryptotermes. NCBI Filter: ("Cryptotermes"[Organism] OR cryptotermes[All Fields]) AND (animals[filter] AND biomol_genomic[PROP] AND mitochondrion[filter]). Updated 05.05.16.
Supplementary material 1 from: Heuer K, Ghosh S, Robinson Sterling A, Toro R (2016) Open Neuroimaging Laboratory. Research Ideas and Outcomes 2: e9113. https://doi.org/10.3897/rio.2.e9113
Animation showing the different functionalities of BrainBox: opening a Magnetic Resonance Imaging volume, viewing it, and editing it collaboratively online.
Supplementary material 1 from: Monteiro M, Reino L, Melo M, Beja P, Bastos-Silveira C, Ramos M, Rodrigues D, Neves IQ, Consciência S, Figueira R (2016) The collection of birds from São Tomé and Príncipe at the Instituto de Investigação Científica Tropical of the University of Lisbon (Portugal). ZooKeys 600: 155-167. https://doi.org/10.3897/zookeys.600.7899
Species lists referred in Tables 1 and 2 showing correspondence between scientific and common names between IOC and BirdLife Internaction/IUCN nomenclatures : Explanation note: Nomenclatural differences between International Ornithological Council and BirdLife International/IUCN lists (2016) for endemic species and endemic subspecies of São Tomé and Príncipe.
Supplementary material 2 from: Rajmis S, Thiele J, Marggraf R (2016) A cost-benefit analysis of controlling giant hogweed (Heracleum mantegazzianum) in Germany using a choice experiment approach. NeoBiota 31: 19-41. https://doi.org/10.3897/neobiota.31.8103
Exemplary choice set and details of scenario benefit calculations : Explanation note: In Suppl. material 2 we present an exemplary choice set used in the choice experiment and some details of econometric analysis.
Supplementary material 1 from: Rajmis S, Thiele J, Marggraf R (2016) A cost-benefit analysis of controlling giant hogweed (Heracleum mantegazzianum) in Germany using a choice experiment approach. NeoBiota 31: 19-41. https://doi.org/10.3897/neobiota.31.8103
Details of scenario cost calculations : Explanation note: In Suppl. material 1 we present some cost calculation details of different infested area types and sizes.
Supplementary material 2 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
IPNI response XML : Explanation note: XML response of IPNI to the query in Suppl. material 1. The response is sent back to Pensoft and contains the registration numbers of the new genus name and the new combination [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 4 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
TaxPub response XML : Explanation note: TaxPub XML returned from ZooBank to Pensoft containing UUIDs of the article, authors and new taxon names [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 1 from: Vaníčková L, Břízová R, Pompeiano A, Ferreira LL, de Aquino NC, Tavares RF, Rodriguez LD, Mendonça AL, Canal NA, do Nascimento RR (2015) Characterisation of the chemical profiles of Brazilian and Andean morphotypes belonging to the Anastrepha fraterculus complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 193-209. https://doi.org/10.3897/zookeys.540.9649
Table S1. Anastrepha fraterculus male and female characteristic.: Explanation note: Anastrepha fraterculus male (m) and female (f) characteristic cuticular hydrocarbons identified by principal component analyses.
Supplementary material 3 from: Břízová R, Vaníčková L, Faťarová M, Ekesi S, Hoskovec M, Kalinová B (2015) Analyses of volatiles produced by the African fruit fly species complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 385-404. https://doi.org/10.3897/zookeys.540.9630
Table 3: Explanation note: Compounds, their relative percentage (Area±SD), and chemical characteristics identified by GC×GC-TOFMS and GC-FID/EAD in the headspace extracts of the calling males of Ceratitis rosa.
Supplementary material 2 from: Břízová R, Vaníčková L, Faťarová M, Ekesi S, Hoskovec M, Kalinová B (2015) Analyses of volatiles produced by the African fruit fly species complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 385-404. https://doi.org/10.3897/zookeys.540.9630
Table 2: Explanation note: Compounds, their relative percentage (Area±SD), and chemical characteristics identified by GC×GC-TOFMS and GC-FID/EAD in the headspace extracts of the calling males of Ceratitis anonae.
Supplementary material 1 from: Břízová R, Vaníčková L, Faťarová M, Ekesi S, Hoskovec M, Kalinová B (2015) Analyses of volatiles produced by the African fruit fly species complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 385-404. https://doi.org/10.3897/zookeys.540.9630
Table 1: Explanation note: Compounds, their relative percentage (Area±SD), and chemical characteristics identified by GC×GC-TOFMS and GC-FID/EAD in the headspace extracts of the calling males of Ceratitis fasciventris.
Supplementary material 1 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of IPNI : Explanation note: XML query sent from Pensoft to IPNI on the day of acceptance of the manuscript for publication [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 3 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of TaxPub : Explanation note: TaxPub XML of a ready-to-publish manuscript submitted from Pensoft to ZooBank [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 3 from: Katz AD, Giordano R, Soto-Adames F (2015) Taxonomic review and phylogenetic analysis of fifteen North American Entomobrya (Collembola, Entomobryidae), including four new species. ZooKeys 525: 1-75. https://doi.org/10.3897/zookeys.525.6020
Photographs of type specimens: Explanation note: Photographs of type specimens stored at the Illinois Natural History Survey, Champaign, IL. Lateral (A) and dorsal (B) views of a neo-paratype specimen of Entomobrya quadrilineata Bueker, 1939, Fountain Bluff, IL., V.15.1932, Ross & Mohr. Lateral view of a co- type specimen of Entomobrya decemfasciata Packard 1873 (C), no locality information. Entomobrya ligata Folsom 1924: Co-type specimens, Roorheesville?, NY 30Aug1923, M. J. Leonard (D, E, F); Co-type specimen, NY, July 1923, A. Wolf (G).
Supplementary material 2 from: Katz AD, Giordano R, Soto-Adames F (2015) Taxonomic review and phylogenetic analysis of fifteen North American Entomobrya (Collembola, Entomobryidae), including four new species. ZooKeys 525: 1-75. https://doi.org/10.3897/zookeys.525.6020
Distribution maps: Explanation note: Distribution maps: A, Entomobrya assuta; B, Entomobrya atrocincta; C, Entomobrya bicolor; D, Entomobrya citrensis sp. n.; E, Entomobrya clitellaria; F, Entomobrya decemfasciata; G, Entomobrya intermedia; H, Entomobrya jubata sp. n.; I, Entomobrya ligata; J, Entomobrya multifasciata; K, Entomobrya neotenica sp. n.; L, Entomobrya nivalis; M, Entomobrya quadrilineata; N, Entomobrya unifasciata sp. n.; O, Entomobrya unostrigata.
Supplementary material 1 from: Katz AD, Giordano R, Soto-Adames F (2015) Taxonomic review and phylogenetic analysis of fifteen North American Entomobrya (Collembola, Entomobryidae), including four new species. ZooKeys 525: 1-75. https://doi.org/10.3897/zookeys.525.6020
Morphology matrix: Explanation note: Alignment nexus file for all morphological characters used for phylogentic analysis. This file is optimized for viewing in mesquite and includes all character state information.
Supplementary material 2 from: Hogendoorn K, Stevens M, Leijs R (2015) DNA barcoding of euryglossine bees and the description of new species of Euhesma Michener (Hymenoptera, Colletidae, Euryglossinae). ZooKeys 520: 41-59. https://doi.org/10.3897/zookeys.520.6185
Phylogenetic relationships of euryglossine species based on CO1 sequence data: Explanation note: tree based on CO1 sequence data.
Supplementary material 1 from: Jochum A, Slapnik R, Klussmann-Kolb A, Páll-Gergely B, Kampschulte M, Martels G, Vrabec M, Nesselhauf C, Weigand AM (2015) Groping through the black box of variability: An integrative taxonomic and nomenclatural re-evaluation of Zospeum isselianum Pollonera, 1887 and allied species using new imaging technology (Nano-CT, SEM), conchological, histological and molecular data (Ellobioidea, Carychiidae). Subterranean Biology 16: 123-165. https://doi.org/10.3897/subtbiol.16.5758
List of localities of Zospeum isselianum: Explanation note: List of localities of Zospeum isselianum. A − Austria, BiH − Bosnia and Herzegovina, Cro − Croatia, Slo − Slovenia, Ita − Italy, CBSS − Collection of Croatian Biospeleological Society, CSR SASA – Malacological collection of the Biological Institute of the Centre for Scientific Research of the Slovenian Academy of Sciences and Arts in Ljubljana, SMNH – Malacological collection of the Slovenian Museum of Natural History, LIT – data from literature.
Supplementary material 1 from: Frahnert S, Aguilera Román R, Eckhoff P, Wiley JW (2015) Juan Cristóbal Gundlach's collections of Puerto Rican birds with special regard to types. Zoosystematics and Evolution 91(2): 177-189. https://doi.org/10.3897/zse.91.5550
List of consulted collections: Explanation note: Collections in Europe, United Kingdom, United States of America, and Caribbean queried or inventoried for presence of Puerto Rican bird specimens collected by Juan Gundlach. Where available, institution abbreviations follow standards set in AVECOL (http://www.museum.lsu.edu/~Remsen/AVECOLlections.html).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.