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2,216
datasets available to search
ShareScore release 0.9.0
Dataset results
2,216 results for “membrane”
The Nociceptive Activity of Peripheral Sensory Neurons is Modulated by the Neuronal Membrane Proteasome
GEO Series GSE261727. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Proteinase-Activated Receptor 4 (PAR4) mediates cell membrane blebbing in a Gaq/11, Gai independent, RhoA and ß-arrestin-dependent manner.
GEO Series GSE134713. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Plasma Membrane Integrity Signaling
GEO Series GSE166538. Homo sapiens; Mus musculus. 59 samples. Type: Expression profiling by high throughput sequencing.
Lipid-anchored Proteasomes Control Membrane Protein Homeostasis
GEO Series GSE232308. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Hepatic sphingomyelin phosphodiesterase 3 promotes steatohepatitis by disrupting membrane sphingolipid metabolism
GEO Series GSE271333. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Chloroplast nucleoid is organized by membrane association of transcribed genes [IPOD]
GEO Series GSE228228. Arabidopsis thaliana. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Isolation, identification and osteogenic capability analysis of mesenchymal stem cells derived from different layers of human maxillary sinus membrane
GEO Series GSE240641. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
CPT1A-mediated MFF succinylation promotes stemness maintenance in ovarian cancer stem cells by enhancing mitochondria-associated membranes formation
GEO Series GSE273383. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
RtmR is a membrane-embedded RRM-family RNA-binding protein that regulates biofilm formation
GEO Series GSE301959. Aliivibrio fischeri. 2 samples. Type: Other.
Insights into the Formation and Diversification of a Novel Chiropteran Wing Membrane from Embryonic Development
GEO Series GSE224088. Pteronotus quadridens; Erophylla sezekorni. 48 samples. Type: Expression profiling by high throughput sequencing.
Hepatic sphingomyelin phosphodiesterase 3 promotes steatohepatitis by disrupting membrane sphingolipid metabolism
GEO Series GSE271336. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Functional expression of membrane alanyl-aminopeptidase (CD13/APN) promotes tumor cell proliferation and neoangiogenesis in malignant gliomas.
GEO Series GSE37923. Homo sapiens. 4 samples. Type: Expression profiling by array.
Chloroplast nucleoid is organized by membrane association of transcribed genes [ChIP]
GEO Series GSE228226. Arabidopsis thaliana. 36 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chloroplast nucleoid is organized by membrane association of transcribed genes [SOLINA]
GEO Series GSE228229. Arabidopsis thaliana. 62 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparative transcriptomic profiling between wild-type and FvMATE51 mutant (a vacuolar membrane protein) strawberry fruits at 26 DPA
GEO Series GSE306074. Fragaria vesca. 9 samples. Type: Expression profiling by high throughput sequencing.
Myelin antigen capture in the CNS by B cells expressing EBV latent membrane protein 1 leads to demyelinating lesion formation [BRB-seq]
GEO Series GSE308407. Mus musculus. 1 samples. Type: Other.
Immunostimulatory effects of Streptococcus sanguinis extracellular membrane vesicles protect oral gingival epithelial cells from periodontal pathobiont damage
GEO Series GSE288367. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Long-chain lipids facilitate insertion of large nanoparticles into membranes of small unilamellar vesicles
<p>DLS data and Cryo Images of SUVs-QDs</p>
Long-chain lipids facilitate insertion of large nanoparticles into membranes of small unilamellar vesicles
<p>DLS data and Cryo Images of SUVs-QDs</p>
Semifluorinated Polymer Membranes by Ring-Opening Metathesis Polymerization during Spin Coating
<p>Date: 18 November, 2024</p> <p> </p> <p>Dataset Title: Semifluorinated Polymer Membranes by Ring-Opening Metathesis Polymerization during Spin Coating</p> <p> </p> <p> </p> <p>Dataset Creators: Arun Srikanth Sridhar</p> <p> </p> <p>Dataset Contact:</p> <p>Arun Srikanth Sridhar: askforarun@gmail.com</p> <p>Prof. Clare McCabe: C.MCCABE@hw.ac.uk</p> <p> </p> <p> </p> <p>Funding: Division of Materials Research (Award #2119575) , Graduate Research Fellowship Program, HWU high performance computing facility (DMOG)</p> <p> </p> <p> </p> <p>Key Points:</p> <p>- Molecular simulations and experiments agree that fluorocarbon side chains align parallel to the surface in the bulk but normal to the surface at the interface. </p> <p>- Molecular simulations show preferential segregations of CF<sub>3</sub> groups over CF<sub>2</sub> and CH<sub>2</sub> groups.</p> <p>- Fractional free volume increases upon flourination</p> <p> </p> <p> </p> <p>Research Overview:</p> <p> </p> <p>Molecular dynamics (MD) simulations were utilised to validate the theoretical and semi-empirical approaches employed and provide molecular level insight to the experientially observed behavior.</p> <p> </p> <p> </p> <p>Methodology:</p> <p>All simulations were conducted in NPT, NVT ensembles using GROMACS 2023.2. MDanalysis, mdtraj, and gromacs utility functions were used for postprocessing atomic trajectories.</p> <p> </p> <p>Files contained here:</p> <p> </p> <p>The PNBFN_SI folder contains two subfolders, PNBFN_signac and thickfilm_signac, a python file, analysis.py and a Jupyter notebook file, final_results.ipynb.</p> <p> </p> <p>Inside the PNBFN_signac folder you will find workspace folder. Each folder inside workspace folder corresponds to a specific polymer system. The information regarding the system is contained in signac_statepoint.json file. </p> <p> </p> <p>Inside any folder within the workspace folder of PNBFN_signac you will find</p> <p>1) all the necessary GROMACS files to reproduce the simulations of bulk polymer systems.</p> <p>2) The bash scripts used to run the simulations (for example 21stepbulk.sh is the script used to create bulk polymer systems ) in the cluster.</p> <p>3) The free volume folders, freevol_300_0_2.8, freevol_300_500000_2.8, freevol_300_100000_2.8 contain the necessary files to reproduce the calculations carried out using pore blazer. Here, 300 refers to the temperature, the second item (0,500000,100000) refers to the time stamp (in ps), the third item 2.8 refers to the probe diameter.</p> <p>4) log files.</p> <p> </p> <p>Inside the thickfilm_signac folder you will find workspace folder. Each folder inside workspace folder corresponds to a specific polymer film system.</p> <p> </p> <p>Inside any folder within the workspace of thickfilm_signac folder you will find</p> <p>1) all the necessary GROMACS files to reproduce the simulations of polymer film systems.</p> <p>2) The bash scripts used to run the simulations (for example 21stepfilm.sh is the script used to create polymer film systems) in the cluster.</p> <p>3) log files</p> <p> </p> <p>analysis.py in PNBFN_signac contains the python codes for running the simulations (generating the bashscripts) and the codes used in post processing.</p> <p> </p> <p>The final_results.ipynb calls the functions in analysis.py and contains the codes for generating the figures in the manuscript. Each code block in final_results.ipynb corresponds to a figure in the manuscript. The code blocks are commented for clarity.</p> <p>Use and Access:</p> <p>To use the signac framework of this project, MOSDEF suite (https://mosdef.org), SIGNAC (<a href="https://signac.io/">https://signac.io</a>) and other python packages need to be installed. These python packages can be found in analysis.py and final_results.ipynb.</p> <p>The trajectories require large disk space and are not provided but the simulations can be easily extended/reproduced using the following commands. Execute these commands within any folder inside workspace to extend the simulations by 1000 ps.</p> <p>gmx convert-tpr -s X.tpr -extend 1000 -o next.tpr</p> <p>gmx mdrun -s next.tpr -cpi X.cpt -noappend </p> <p>where X.tpr is the tpr file (topology file) and X.cpt is the check point file</p> <p> </p> <p>The full signac framework will be made available upon request.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.