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FIGURE 1 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 1. The three nominal species of Cophyla known to date: (a) C. phyllodactyla calling male, Nosy Be (voucher number unknown); (b) C. phyllodactyla, Nosy Be (voucher number unknown); (c) C. phyllodactyla, Manongarivo (ZSM 842/2003); (d) C. berara, Berara (holotype, ZSM 410/2000); (e) C. occultans, Nosy Be (voucher number unknown).
FIGURE 10 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 10. Ventral view of shoulder girdle, showing differences in shoulder girdle structure between species and candidate species of Cophyla and Platypelis, based on micro-CT scans. Clavicle (missing in most Cophyla, present in in C. puellarum and as far as known in all Platypelis) coloured in red (all scale bars 1 mm). (a) C. maharipeo sp. nov., ZSM 3252/2012, from Joffreville; (b) C. noromalalae sp. nov., ZSM 3273/2012, from entrance of Montagne d'Ambre National Park; (c) C. puellarum sp. nov., UADBA-A 60237, from Point de Vue du Grand Moulin, Montagne d'Ambre National Park; (d) P. cf. barbouri, NSH 2587, from Manombo Special Reserve; (e) P. pollicaris, NSH 2419, from Ranomafana National Park.
FIGURE 6 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 6. Comparative call data of partial call series of six species of Cophyla. C. occultans recorded in February 1995, 25˚C; C. berara recorded in February 2000, 23.5˚C; C. phyllodactyla, recorded in February 1992, 26˚C; C. maharipeo sp. nov., UADBA-A 60232, recorded in January 2012, ca 25˚C; C. noromalalae sp. nov., ZSM 3273/2012, recorded in November 2012, ca 20˚C; C. puellarum sp. nov., UADBA-A 60237, recorded in November 2012, ca 17˚C. Recordings of C. berara, C. occultans, and C. phyllodactyla are from Vences et al. (2005). The initial intensity peaks at each call of C. maharipeo and C. puellarum probably represent an artefact of the recording device, or an abnormal sound emission of the recorded specimens.
FIGURE 17 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 17. Audiospectrogram and oscillogram of two advertisement calls (part of a longer call series) of Cophyla puellarum sp. nov. recorded from paratype specimen UADBA-A 60237, at Point de Vue du Grand Moulin in Montagne d'Ambre National Park, on 10 December 2012, air temperature of ca 17˚C. The sounds above 2500 Hz represent other frogs or insects, and the initial intensity peaks at each call probably represent an artefact of the recording device or an abnormal sound emission of the recorded specimens.
FIGURE 13 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 13. Audiospectrogram and oscillogram of two advertisement calls (part of a longer call series) of Cophyla maharipeo sp. nov. from paratype UADBA-A 60232, recorded at Joffreville on 17 January 2012, ca 25˚C, number of recording DR089. The sounds above 3000 Hz represent other frogs or insects, and the initial intensity peaks at each call probably represent an artefact of the recording device or an abnormal sound emission of the recorded specimen.
FIGURE 12 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 12. Ventral sides of the holotypes of the three newly described Cophyla species from Montagne d'Ambre and Joffreville, photographed from living specimens. Inset photos show the same specimens in dorsolateral view. (a) C. maharipeo sp. nov., male holotype ZSM 3251/2012, Joffreville; (b) C. noromalalae sp. nov., male holotype ZSM 3250/2012, park entrance, male; (c) C. puellarum sp. nov., male holotype ZSM 3249/2012, Point de Vue du Grand Moulin.
FIGURE 3. Majority-rule consensus tree derived from a in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 3. Majority-rule consensus tree derived from a partitioned Bayesian inference analysis of DNA sequences of the nuclear RAG1 gene (503 bp), showing relationships among species of Cophyla. Numbers at nodes are posterior probabilities (only values>0.9 shown). The tree was rooted with the same outgroups as in Fig. 2 (removed for better graphical representation).
FIGURE 16 in Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: integration of molecular, osteological, and bioacoustic data reveals three new species
FIGURE 16. Specimens of C. puellarum sp. nov. in life: (a) calling male paratype ZSM 3274/2012; (b) male holotype, ZSM 3249/2012; (c) male UADBA-A 60237; observed calling; (d) juvenile ZSM 0781/2009, (e) ovigerous female ZSM 3275/2012. Specimens in b, c, e from Point de Vue du Grand Moulin in Montagne d'Ambre National Park. Specimen in d from Lac Maudit.
Jensen_etal_2022_molecular_dynamics_simulation_data
<p>Full molecular dynamics simulation data set accompanying Jensen et al, 2022, containing (i) representative coordinates and measurements described therein, (ii) simulation trajectories, and (iii) GROMACS input files.</p>
Figure data of "Measurement report: Molecular-level investigation of atmospheric cluster ions at the tropical high-altitude research station Chacaltaya (5240 m a.s.l.) in the Bolivian Andes"
<p>This dataset involves the data that is used for the figures in "Measurement report: Molecular-level investigation of atmospheric cluster ions at the tropical high-altitude research station Chacaltaya (5240 m a.s.l.) in the Bolivian Andes".</p>
FIGURE 3 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 3. Phylogenetic tree for Aconurella based on mitochondrial COI haplotypes from BEAST. Bootstrap support and posterior probabilities of nodes are indicated above and below the branches, respectively. The right vertical bars indicate the number of putative species using various methods as indicated at the top. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 2 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 2. Bayesian consensus phylogenetic tree for Aconurella based on three-gene data set (COI, 16S and ITS2). Numbers on the node represents the posterior probabilities. The right vertical bars indicate the putative species using BPP. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 5 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 5. Phylogenetic tree for Aconurella based on mitochondrial ITS2 haplotypes from BEAST. Bootstrap support and posterior probabilities of nodes are indicated above and below the branches, respectively. The right vertical bars indicate the number of putative species using various methods as indicated at the top. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 4 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 4. Phylogenetic tree for Aconurella based on mitochondrial 16S haplotypes from BEAST. Bootstrap support and posterior probabilities of nodes are indicated above and below the branches, respectively. The right vertical bars indicate the number of putative species using various methods as indicated at the top. The scale bar shows the number of substitutions per site. Morphological species are uniquely coloured.
FIGURE 1. A in Three new species of Culex (Melanoconion) (Diptera: Culicidae) from French Guiana based on morphological and molecular data
FIGURE 1. A, Map showing the distribution of Culex (Melanoconion) sallumae n. sp. (red star), Cx. (Mel.) hutchingsae n. sp. (green dots) and Cx. (Mel.) lucackermanni n. sp. (yellow triangle) in French Guiana; B, Maximum Likelihood (ML) tree of the COI barcodes obtained from the type specimens of the three new species. Bootstrap support values under 500 replications are indicated near nodes. The specimen number, species name and Barcode Index Number (BIN) provided by the Barcode of Life Data Systems (BOLD) are indicated for each barcode sequence.
FIGURE 5 in Three new species of Culex (Melanoconion) (Diptera: Culicidae) from French Guiana based on morphological and molecular data
FIGURE 5. Aquatic habitats of (A) Culex (Melanoconion) hutchingsae n. sp. and (B) Cx. (Mel.) lucackermanni n. sp. in the Réserve Naturelle Nationale de La Trinité, French Guiana.
FIGURE 2 in Three new species of Culex (Melanoconion) (Diptera: Culicidae) from French Guiana based on morphological and molecular data
FIGURE 2. Male genitalia of Culex (Melanoconion) sallumae n. sp. A, Gonocoxopodite, lateral aspect; B, gonocoxopodite, mesal aspect; C, paraproct, tergum X and basal plate, in lateral views; D, paramere, lateral view; E, lateral plate and aedeagal sclerite, lateral views; F, tergum IX; G, tergum VIII. AeS, aedeagal sclerite; BP, basal plate; dSL, distal division of subapical lobe; Gc, gonocoxite; GC, gonostylar claw; Gs, gonostylus; LP, lateral plate; lsp, lateral setal patch; Ppr, paraproct; pSL, proximal division of subapical lobe; X-Te, tergum X.
Figure 5 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 5. Live specimens of Cyrtodactylus ngopensis sp. nov.: (a) holotype, MZMU2553; (b) paratype, MZMU2552; (c) paratype, MZMU2554; (d) paratype, MZMU2555; (e) paratype, MZMU2556; (f) uncollected individual.
Figure 1 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 1. Elevation map showing the type locality of the newly described Cyrtodactylus species (black star), and its congeners included in the comparisons (black triangles): 1. Cyrtodactylus ngopensis sp. nov.; 2. C. siahaensis; 3. C. lungleiensis; 4. C. bengkhuaiai; 5. C. aaronbaueri; 6. C. montanus; 7. C. tripuraensis; 8. C. khasiensis; 9. C. jaintiaensis; 10. C. karsticola; 11. C. agarwali; 12. C. exercitus; 13. C. urbanus; 14. C. guwahatiensis; 15. C. septentrionalis; 16. C. kazirangaensis; 17. C. nagalandensis; 18. C. arunachalensis; 19. C. markuscombaii and C. martinstolli; 20. C. himalayicus; 21. C. cayuensis; 22. C. tamaiensis; 23. C. namtiram; 24. C. ayeyarwadyensis; 25. C. mandalayensis; 26. C. aunglini; 27. C. brevidactylus; 28. C. chrysopylos; 29. C. gansi; 30. C. myaleiktaung.
Figure 4 in Morphological and molecular phylogenetic data reveal another new species of bent-toed gecko (Cyrtodactylus Gray: Squamata: Gekkonidae) from Mizoram, India
Figure 4. The holotype of Cyrtodactylus ngopensis sp. nov. (MZMU2553): (a) dorsal view; (b) ventral view; (c) details of dorsal pholidosis; (d) dorsal view of head; (e) lateral view of head; (f) ventral view of head.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.