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Supplementary material 1 from: Kanzaki N, Ragsdale E, Giblin-Davis R (2014) Revision of the paraphyletic genus Koerneria Meyl, 1960 and resurrection of two other genera of Diplogastridae (Nematoda). ZooKeys 442: 17-30. https://doi.org/10.3897/zookeys.442.7459
Species status and several key characters of Koerneria sensu lato in the revised genera.: Explanation note: Taxonomic history, morphological (typological) characters, and life-history traits of Koerneria sensu lato in the revised genera.
Supplementary material 1 from: Grubbs S, Baumann R, DeWalt R, Tweddale T (2014) A review of the Nearctic genus Prostoia (Ricker) (Plecoptera, Nemouridae), with the description of a new species and a surprising range extension for P. hallasi Kondratieff & Kirchner. ZooKeys 401: 11-30. https://doi.org/10.3897/zookeys.401.7299
Raw locality data for all Prostoia material examined in this study.: Explanation note: Supplementary material 1 is an MS Excel spreadsheet with all specimen locality data used in this article.
Supplementary material 1 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Character matrix of 32 morphological and reproductive characters among 11 phoronid species considered in the Discussion.:
Supplementary material 1 from: McCormack R (2014) The eastern swamp crayfish Gramastacus lacus sp. n. (Decapoda, Parastacidae) a new species of freshwater crayfish from coastal New South Wales, Australia. ZooKeys 398: 53-67. https://doi.org/10.3897/zookeys.398.7544
Gramastacus lacus specimen data.: Explanation note: Specimen record with locality details for known populations of the eastern swamp crayfish Gramastacus lacus sp. n., in coastal New South Wales.
Supplementary material 1 from: Trueman M, Standish R, Orellana D, Cabrera W (2014) Mapping the extent and spread of multiple plant invasions can help prioritise management in Galapagos National Park. NeoBiota 23: 1-16. https://doi.org/10.3897/neobiota.23.7800
Index of vegetation classes and results on the distribution of invasive plants from the spatial database of canopy plant densities over the National Park on Santa Cruz Island, Galapagos: Explanation note: This document contains an index to the vegetation classes featured in the spatial database. It also has an additional table of results on the distribution of invasive plants in the canopy in each historical vegetation type, and in each density category.
F I G U R E 3 in Cutting the Gordian Knot: Phylogenetic and ecological diversification of the Mesalina brevirostris species complex (Squamata, Lacertidae)
F I G U R E 3 Results of 100 replicates of niche identity (above diagonal) and background tests (below diagonal). Observed niche overlap (Schoener's D) is given in the upper right corner of each graph and is also indicated by red bars. The identity tests show that the niches are significantly different from models based on pooled and randomly resampled records for all species pairs except M. bernoullii—M. microlepis. Scales of the x axis of all identity tests are 0–1. Background tests show two comparisons, one of the occurrences of the species in row against the background for the species in column (black bars and p values), the other of occurrences of the species in column compared with the background for the species in row (grey bars and p values). Note that the scale of the x axes differs in the background graphs. Asterisks by p values denote significant results. Names of taxa correspond to changes proposed in this study
F I G U R E 2 in Cutting the Gordian Knot: Phylogenetic and ecological diversification of the Mesalina brevirostris species complex (Squamata, Lacertidae)
F I G U R E 2 (a) Species-tree cloudogram (grey shading) superimposed with the MCC tree (black) inferred using three mtDNA and three nDNA gene fragments. White dots mark nodes with pp support ≥.95. Mean ages are indicated for supported nodes in white rectangles by nodes together with 95% HPD (also indicated as blue bars). Higher colour densities in the cloudogram represent higher levels of certainty that given clade exists. The depicted individuals are as follows: Mesalina microlepis from Hermel, Lebanon (voucher NMP 74214/2); M. saudiarabica sp. n. from Mahazat as-Sayd, Saudi Arabia (photovoucher NMP6F 29-30, not sampled); M. bernoullii from Chosrevi, Iran (unvouchered, sample I02), M. brevirostris from the Marawah Island, UAE (unvouchered, not sampled). Specimens are not to scale. (b) Allele networks of the three nDNA gene fragments analysed. Circle sizes are proportional to the number of alleles, lines represent mutational steps. Names of taxa correspond to changes proposed in this study
F I G U R E 1 in Cutting the Gordian Knot: Phylogenetic and ecological diversification of the Mesalina brevirostris species complex (Squamata, Lacertidae)
F I G U R E 1 (a) Map of the Arabian Peninsula showing localities of material examined in this study. Large circles indicate material used for the phylogenetic analyses; smaller paler circles indicate additional records used for the SDM. Dashed line delimits the background for developing the models. Potential distributions of Mesalina bernoullii, M. brevirostris, M. microlepis and M. saudiarabica sp. n. based on the MTSS threshold are shown in corresponding colours. The green and blue striped region shows the overlap of the potential distributions of M. bernoullii and M. microlepis. (b) Plot of the environmental space of the study background and its respective parts occupied by the four species as identified by the PCA. The first two principal components and their contributions to general variation are shown. The species environmental spaces are based on their modelled distributions. Names of taxa correspond to changes proposed in this study
FIGURE 7 in Rhigognostis senilella (Zetterstedt, 1839) and R. marmorosella (Wocke, 1849): two valid species distinguishable in genitalia (Lepidoptera, Plutellidae)
FIGURE 7. Rhigognostis marmorosella adult male, Tatra Mts: 1 male, Sarnia Skała, 8.06.1980, E. Baraniak, leg., FIGURE 8. Rhigognostis marmorosella adult female, Tatra Mts: 1 female, Giewont, 26.09.1981, J. Buszko, leg.,
FIGURE 11 in Rhigognostis senilella (Zetterstedt, 1839) and R. marmorosella (Wocke, 1849): two valid species distinguishable in genitalia (Lepidoptera, Plutellidae)
FIGURE 11. Male genitalia: a—general without valva, b—separated valva, c—apodeme, d—aedeagus, e—tip of edeagus, faedeagus base with ductus ejaculatorius.
FIGURE 9 in Rhigognostis senilella (Zetterstedt, 1839) and R. marmorosella (Wocke, 1849): two valid species distinguishable in genitalia (Lepidoptera, Plutellidae)
FIGURE 9. Rhigognostis marmorosella labial palp, Tatra Mts: 1 male, Sarnia Skała, 8.06.1980, E. Baraniak, leg.,
FIGURE 5 in Rhigognostis senilella (Zetterstedt, 1839) and R. marmorosella (Wocke, 1849): two valid species distinguishable in genitalia (Lepidoptera, Plutellidae)
FIGURE 5. Male genitalia: a—general without valva, b—separated valva, c—apodeme, e— aedeagus, f— tip of aedeagus, g— aedeagus base with ductus ejaculatorius.
FIGURE 3. Rhigognostis senilella labial palp, V in Rhigognostis senilella (Zetterstedt, 1839) and R. marmorosella (Wocke, 1849): two valid species distinguishable in genitalia (Lepidoptera, Plutellidae)
FIGURE 3. Rhigognostis senilella labial palp, V. Grønland, Narssarssuaq, 31.08.1962, Niels L. Wolff, leg.
FIGURE 6. Female a in Rhigognostis senilella (Zetterstedt, 1839) and R. marmorosella (Wocke, 1849): two valid species distinguishable in genitalia (Lepidoptera, Plutellidae)
FIGURE 6. Female a—general view, b—antrum, c—inception to corpus bursae, d—denticles on corpus bursae.
International data (WB, UNDP, JMP) Nov. 2017. Preprocessed with R (code included).
<p>Preprocess of the following data for use with R:</p> <ul> <li>JMP, http://washdata.org/data [Nov. 2017]</li> <li>UNDP, http://hdr.undp.org/en/data [Nov. 2017]</li> <li>WB, http://data.worldbank.org/data-catalog/world-development-indicators [Nov. 2017]</li> </ul> <p> </p> <p>R files:</p> <p>- DATA2017_Part0.R : It reads the .csv files and writes three .Rdata with the tables with country data and description of variables, one for each data source. The WB pairs indicator-year are dropped if they do not have a minimum of records available. The selection is time consuming. Because of this, an auxiliary table with the number of records for all indicator-years has been saved separately from main results. Also, specific outputs for two thresholds have been already computed (200 and 250). A correspondence between country names used by UNDP and JMP-WB is provided in a .csv file.</p> <p>- DATA2017_Part0B.R : Here, the three tables of data and the three ones with description of the indicators are merged. The countries are kept in the final list only if they are present in the three sources. </p> <p>- DATA2017_Part0C.R : First, data available for year 2015 are collected.. The WB records are kept only if they have less than 40 empty cases. Second, the indicators with time evolution data from 2000-2010 are merged in a single table (WB and JMP data). </p> <p> </p> <p>Directories:</p> <ul> <li>csv/</li> <li>data_org/</li> <li>data_org/JMP/</li> <li>data_org/UNDP/</li> <li>data_org/WB/</li> <li>Rdata/ </li> </ul>
Supplementary material 1 from: Croce A, Nazzaro R (2017) An atlas of orchids distribution in the Campania region (Italy), a citizen science project for the most charming plant family. Italian Botanist 4: 15-32. https://doi.org/10.3897/ib.4.14916
Relations between the 4 tables of the MS Access database used to store the data of the project and respective fields : Data type: Image
Supplementary material 3 from: Croce A, Nazzaro R (2017) An atlas of orchids distribution in the Campania region (Italy), a citizen science project for the most charming plant family. Italian Botanist 4: 15-32. https://doi.org/10.3897/ib.4.14916
References considered for the bibliographic records : Data type: (measurement/occurence/multimedia/etc.)
Supplementary material 1 from: Nedkov S, Zhiyanski M, Dimitrov S, Borisova B, Popov A, Ihtimanski I, Yaneva R, Nikolov P, Bratanova-Doncheva S (2017) Mapping and assessment of urban ecosystem condition and services using integrated index of spatial structure. One Ecosystem 2: e14499. https://doi.org/10.3897/oneeco.2.e14499
Figure representing examples of catalogues used during the identification built and land cover types.
Supplementary material 2 from: Nedkov S, Zhiyanski M, Dimitrov S, Borisova B, Popov A, Ihtimanski I, Yaneva R, Nikolov P, Bratanova-Doncheva S (2017) Mapping and assessment of urban ecosystem condition and services using integrated index of spatial structure. One Ecosystem 2: e14499. https://doi.org/10.3897/oneeco.2.e14499
Table representing all combinations of the integrated index of spatial structute in urban ecosystems in Bulgaria
Supplementary material 1 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Diatom taxa list from the Lerma-Chapala Basin, Central Mexico and identification references : Explanation note: Diatom taxa list from the Lerma‒Chapala Basin, Central Mexico
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.