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Supplementary material 3 from: Murase A, Miki R, Motomura H (2017) Southern limits of distribution of the intertidal gobies Chaenogobius annularis and C. gulosus support the existence of a biogeographic boundary in southern Japan (Teleostei, Perciformes, Gobiidae). ZooKeys 725: 79-95. https://doi.org/10.3897/zookeys.725.19952
List of voucher specimens of Chaenogobius annularis from quantitative surveys at rockpools on the eastern coasts of Kyushu : Explanation note: KPM-NI and KPM-NR indicates the number of the specimen and its photograph respectively.
Supplementary material 4 from: Murase A, Miki R, Motomura H (2017) Southern limits of distribution of the intertidal gobies Chaenogobius annularis and C. gulosus support the existence of a biogeographic boundary in southern Japan (Teleostei, Perciformes, Gobiidae). ZooKeys 725: 79-95. https://doi.org/10.3897/zookeys.725.19952
List of voucher specimens of Chaenogobius gulosus from quantitative surveys at rockpools on the eastern coasts of Kyushu : Explanation note: KPM-NI and KPM-NR indicates the number of the specimen and its photograph respectively.
Supplementary material 3 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 3 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 2 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 2 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 1 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 1 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 5 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 5 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 1 from: Gray R, Strine CT (2017) Herpetofaunal assemblages of a lowland broadleaf forest, an overgrown orchard forest and a lime orchard in Stann Creek, Belize. ZooKeys 707: 131-165. https://doi.org/10.3897/zookeys.707.14029
Common captures during study : Explanation note: Photos of reptiles and amphibians most commonly captured during the study. Information is provided regarding the habitats each species was caught in during the study, their IUCN Redlist conservation status, and EVS scores according to Johnson et al. (2015).
Supplementary material 4 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 4 from: DoNascimiento C, Herrera-Collazos EE, Herrera-R GA, Ortega-Lara A, Villa-Navarro FA, Usma-Oviedo JS, Maldonado-Ocampo JA (2017) Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem. ZooKeys 708: 25-138. https://doi.org/10.3897/zookeys.708.13897
Supplementary material 1 from: Ang Y, Rajaratnam G, Su KFY, Meier R (2017) Hidden in the urban parks of New York City: Themira lohmanus, a new species of Sepsidae described based on morphology, DNA sequences, mating behavior, and reproductive isolation (Sepsidae, Diptera). ZooKeys 698: 95-111. https://doi.org/10.3897/zookeys.698.13411
Aligned COI sequences for Themira putris, T. biloba, and Themira 'biloba-like' (i.e., T. lohmanus n. sp.) specimens : Data type: Fasta file
Supplementary material 1 from: Moraes LJCL, Almeida AP, Fraga R, Rojas RR, Pirani RM, Silva AAA, de Carvalho VT, Gordo M, Werneck FP (2017) Integrative overview of the herpetofauna from Serra da Mocidade, a granitic mountain range in Northern Brazil . ZooKeys 715: 103-159. https://doi.org/10.3897/zookeys.715.20288
Supplementary material 1 from: Moraes LJCL, Almeida AP, Fraga R, Rojas RR, Pirani RM, Silva AAA, de Carvalho VT, Gordo M, Werneck FP (2017) Integrative overview of the herpetofauna from Serra da Mocidade, a granitic mountain range in Northern Brazil . ZooKeys 715: 103-159. https://doi.org/10.3897/zookeys.715.20288
Supplementary material 1 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The sequences renamed during the workshop. The INSDC accession number, the original INSDC name, and the new UNITE name are shown :
Supplementary material 3 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The metadata annotations for the sequences that were found in the same SHs as sequences from the built environment :
Supplementary material 1 from: Murase A, Miki R, Motomura H (2017) Southern limits of distribution of the intertidal gobies Chaenogobius annularis and C. gulosus support the existence of a biogeographic boundary in southern Japan (Teleostei, Perciformes, Gobiidae). ZooKeys 725: 79-95. https://doi.org/10.3897/zookeys.725.19952
List of voucher specimens of Chaenogobius annularis for distribution records in south-east Kyushu by examination of museum collections : Explanation note: Lots of specimens ordered according to longitude. Number of KPM-NR indicates photographs of fresh specimens deposited in KPM.
Supplementary material 1 from: Nie R-E, Bezděk J, Yang X-K (2017) How many genera and species of Galerucinae s. str. do we know? Updated statistics (Coleoptera, Chrysomelidae). In: Chaboo CS, Schmitt M (Eds) Research on Chrysomelidae 7. ZooKeys 720: 91-102. https://doi.org/10.3897/zookeys.720.13517
Genera list and related files : Explanation note: The list of all valid genera (both recent and fossil) of subfamily Galerucinae s. str. in the world.
Supplementary material 2 from: Murase A, Miki R, Motomura H (2017) Southern limits of distribution of the intertidal gobies Chaenogobius annularis and C. gulosus support the existence of a biogeographic boundary in southern Japan (Teleostei, Perciformes, Gobiidae). ZooKeys 725: 79-95. https://doi.org/10.3897/zookeys.725.19952
List of voucher specimens of Chaenogobius gulosus for distribution records in south-east Kyushu by examination of museum collection : Explanation note: Lots of specimen ordered according to longitude. Number of KPM-NR indicating photographs of fresh specimen deposited in KPM.
Supplementary material 2 from: Ossowska EA, Moncada B, Lücking R, Flakus A, Rodriguez-Flakus P, Olszewska S, Kukwa M (2024) Additional new species and new records of the genus Sticta (lichenised Ascomycota, lobarioid Peltigeraceae) from Bolivia. MycoKeys 105: 21-47. https://doi.org/10.3897/mycokeys.105.120810
Best-scoring Maximum Likelihood tree of the Sticta target clade containing the new species from Bolivia (red) and the species new to Bolivia and phylogenetically confirmed from Bolivia (blue), based on the fungal ITS barcoding marker
Supplementary material 1 from: Ossowska EA, Moncada B, Lücking R, Flakus A, Rodriguez-Flakus P, Olszewska S, Kukwa M (2024) Additional new species and new records of the genus Sticta (lichenised Ascomycota, lobarioid Peltigeraceae) from Bolivia. MycoKeys 105: 21-47. https://doi.org/10.3897/mycokeys.105.120810
Specimens of Sticta used in molecular analysis with locality, voucher information, GenBank accession numbers and list of references
HZDR_ANP5_CD8M3_Kjc_R_20230609
<div>Fractesus project. Fracture test mini-CT. Raw data ANP-5. HZDR. </div>
ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity
<p>Clinical trials have identified ARID1A mutations as enriched among patients who respond favorably to Immune Checkpoint Blockade (ICB) in several solid tumor types independent of microsatellite instability. We show that ARID1A loss in murine models is sufficient to induce anti-tumor immune phenotypes observed in ARID1A mutant human cancers, including increased CD8+ T cell infiltration and cytolytic activity. ARID1A deficient cancers upregulated an interferon (IFN) gene expression signature, the ARID1A-IFN signature, associated with increased R-loops and cytosolic single stranded DNA (ssDNA). Overexpression of the R-loop resolving enzyme, RNASEH2B, or cytosolic DNase, TREX1, in ARID1A deficient cells prevented cytosolic ssDNA accumulation and ARID1A-IFN gene upregulation. Further, the ARID1A-IFN signature and anti-tumor immunity were driven by STING dependent Type I IFN signaling, which was required for improved responsiveness of ARID1A mutant tumors to ICB treatment. These findings define a molecular mechanism underlying anti-tumor immunity in ARID1A mutant cancers.</p>
Clevenger_ Essential oils (M. chamomilla; O. vulgare; R. officinalis and Eucaliptus spp.)
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