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2,774 results for “Agent”
New leads for fragment based design of Re/Tc radiopharmaceutical agents: Raw Diffraction Images
<p>Multiple coordination possibilities of <em>fac</em>-[Re(CO)<sub>3</sub>]<sup>+</sup> to a protein, were found bound to the Asp, Glu, Arg and His amino acid residues as well as to the C-terminal carboxylate in the vicinity of Leu and Pro and are described in the publication titled " <em>New leads for fragment based design of Re/Tc radiopharmaceutical agents</em>" written by Brink & Helliwell, <em>IUCrJ</em>, 2017</p> <p>The raw diffraction images for the DLS and Cu Kalpha data sets are made available at the Zenodo research data archive, as specified in the publication.</p>
Can We Trust AI Agents? - Supplementary Material
<p>This is the supplementary material of our paper entitled Can We Trust AI Agents? An Experimental Study Towards Trustworthy LLM-Based Multi-Agent Systems for AI Ethics. Published in TETHICS 2025, Conference on Technology Ethics, Vaasa, Finland, 11-12 November 2025.</p>
Agent-based model predicts that layered structure and 3D movement work synergistically to reduce bacterial load in 3D in vitro models of tuberculosis granuloma - Location Data
<p>This dataset is meant to be used with "Agent-based model predicts that layered structure and 3D movement work synergistically to reduce bacterial load in 3D in vitro models of tuberculosis granuloma - Results and Data". It provides spatial output data for 4 different setups (spheroid, traditional, 3d gravity, and traditional floating) of an agent-based model of <i>in vitro </i>tuberculosis infection models. </p>
ENFERMEIRO OBSTETRA COMO AGENTE FACILITADOR DO PROCESSO DE HUMANIZAÇÃO DURANTE O PARTO
<p>O Enfermeiro Obstetra presta assistência à mulher no ciclo gravídico e puerperal, avaliando as condições de saúde materna, o mesmo, deve está habilitado a conduzir o parto quando esse acontece de forma natural, examinar a gestante, verificar contrações, dilatações e demais alterações no funcionamento do organismo feminino acompanhando todo o processo, desde o planejamento da gestação, do parto e do pós-parto da paciente. O presente estudo possui como objetivos, apresentar o profissional Enfermeiro obstetra como protagonista da assistência ao parto humanizado, além de revelar os benefícios decorrentes de uma assistência de Enfermagem obstetra humanizada ao parto e descrever os principais desafios encontrados pelo Enfermeiro obstetra durante sua prática assistencial ao parto humanizado. Realizado através de um estudo sistemático de revisão de literatura descritivo e exploratório a fim de resumir e integrar as principais informações acerca do referido tema, levando em consideração assim vários autores.</p>
Information and Bargaining through Agents: Experimental Evidence from Mexico's Labor Courts
<p>Sadka, Joyce, Enrique Seira and Christopher Woodruff, "Information and Bargaining through Agents: Experimental Evidence from Mexico’s Labor Courts", Review of Economic Studies, accepted.</p>
Simulated results from an agent-based model examining inequality and innovation in social networks
<p>Theories of innovation often balance contrasting views that either smart people create smart things or smartly constructed institutions create smart things. While population models have shown factors including population size, connectivity, and agent behavior as crucial for innovation, few have taken the individual-central approach seriously by examining the role individuals play within their groups. To explore how network structures influence not only population-level innovation but also performance among individuals, we studied an agent-based model of the Potions Task, a paradigm developed to test how structure affects a group's ability to solve a difficult exploration task. We explore how size, connectivity, and rates of information sharing in a network influence innovation and how these have an impact on the emergence of inequality in terms of agent contributions. We find, in line with prior work, population size has a positive effect on innovation, but that large and small populations perform similarly per capita; that many small groups outperform fewer large groups; that random changes to structure have few effects on innovation; and that the highest performing agents tend to occupy more central network positions. Moreover, we show that every network factor which facilitates innovation leads to a proportional increase in inequality of performance, creating "genius effects" among otherwise "dumb" agents in both idealized and real-world networks.</p>
Supplemental data to AALE 2024 publication "Adaptive manufacturing: dynamic resource allocation using multi-agent reinforcement learning"
<p>Release as supplementary material for our contribution at AALE 2024: "Adaptive manufacturing: dynamic resource allocation using multi-agent reinforcement learning"<br><br>The evaluation datasets stored in this collection are used to compare the performance of multi-agent reinforcement learning. In addition, the performance of other methods such as (meta-) heuristic algorithms or single agent reinforcement learning algorithms or novel methods of search space reduction can also be compared.</p>
Supplemental Movie Files for "Agent-Based Modeling of a Nuclear Chromosome Ensemble Identifies Determinants of Homolog Pairing During Meiosis" by Chriss et al.
<p>This set of Supplemental Information contains two movies made from the simulations from the model developed in the manuscript "<strong>Agent-Based Modeling of a Nuclear Chromosome Ensemble Identifies Determinants of Homolog Pairing During Meiosis</strong>" by A. Chriss, G. V. Börner, and S. D. Ryan. </p> <p> </p> <p>Supplemental Movie S1: <strong>WT Chromosome Trajectories during Prophase I. </strong>The first file "movie_WT..." contains the file for the results of simulations for the wild-type chromosomes and the exact parameter values can be found in Table 1 of the manuscript. The movie shows one realization of the agent-based model. The simulation movie covers the homology search process from <em>t = 3h </em>to <em>t = 9h</em>. Matching colors correspond to homologous pairs. True chromosome lengths are incorporated and scale the relevant interaction radii. The radius represents the attractive and non-homologous repulsive region.</p> <p> </p> <p>Supplemental Movie S2: <strong>WT Chromosome Trajectories during Prophase I with active dumbbell model. </strong> The second file "movie<em>WT</em>_activedumbbell..." contains the file for the results of the simulations for the modeling of chromosomes as active dumbbells (from polymers) to allow for the study of the effects of elongation, orientation, and flexibility. The movie shows one realization of the agent-based active dumbbell model which is closer to modeling a chromosome as a polymer. The simulation movie covers the homology search process from <em>t = 3h </em>to <em>t = 9h</em>. Matching colors correspond to homologous pairs. True chromosome lengths are incorporated and scale the relevant interaction radii, but are allowed to change in time as the two beads expand and contract. The radius represents the attractive and non-homologous repulsive region.</p> <p> </p> <p>Supplemental Movie S3: <strong><em>spo11</em> hypomorph (30% WT DSB levels) Chromosome Trajectories during Prophase I (parameters from Fig 7B)</strong>. The third file "movie_spo11..." contains the file for the results of the simulations for the spo-11 hypomorph and the associated parameter values can be found in Table 1 of the manuscript. The movie depicts one realization of the agent-based model for the {\it spo11} hypomorphic mutant. The simulation movie covers the homology search process from <em>t = 3h</em> to <em>t = 9h</em> where mutant <em>spo11</em> is associated with a weaker attractive and repulsive force (e.g., reduction to 77% of WT values). True chromosome lengths are incorporated and scale the relevant interaction radii. Matching colors correspond to homologous pairs. The radii represent the homologous attractive and the non-homologous repulsive region. Note that the reduction in interaction strength delays homologous pairing consistent with experimental observations in [13]. </p> <p> </p> <p> </p> <p>The codes that generated these movies were written in Matlab and freely available via GitHub: <a href="https://github.com/sdryan/ChromosomeDynamicsProphase1">https://github.com/sdryan/ChromosomeDynamicsProphase1</a></p> <p> </p> <p>For questions please contact the corresponding authors: G. Valentin Börner <a href="mailto:g.boerner@csuohio.edu">g.boerner@csuohio.edu</a> (Biology) or Shawn D. Ryan <a href="mailto:s.d.ryan@csuohio.edu">s.d.ryan@csuohio.edu</a> (Math).</p>
Figure 3 in Aculus taihangensis (Acari: Prostigmata: Eriophyidae), a potential biological control agent identified from the highly invasive pest plant, tree of heaven, in Türkiye
Figure 3. Aculus taihangensis – Deutogyne: A. Coxigenital region, B. Internal genitalia.
Discovery of Natural Dual Inhibitors from ZINC Database Targeting Thymic Stromal Lymphopoietin (TSLP) and Interleukin-33 (IL-33) as Potential Anti-Allergy Agents - MD Simulation XVG Files and Complex PDB Files (Docking Results)
<p>This repository contains input and output files of MD simulations along with MM/PBSA related files</p> <p>Manuscript Title: Discovery of Natural Dual Inhibitors from ZINC Database Targeting Thymic Stromal Lymphopoietin (TSLP) and Interleukin-33 (IL-33) as Potential Anti-Allergy Agents</p> <p> </p>
Multi-level in vivo selection of the biocontrol agent Akanthomyces muscarius, virulence, growth, sporulation, and variant data
<p>Changes in parasite virulence are commonly expected to lead to trade-offs in other life history traits that can affect fitness. Understanding these trade-offs is particularly important if we want to manipulate the virulence of microbial biological control agents. Theoretically, selection across different spatial scales, i.e. between- and within-hosts, shapes these trade-offs. However, trade-offs are also dependent on parasite biology. Despite their applied importance the evolution of virulence in fungal parasites is poorly understood: virulence can be unstable in culture and commonly fails to increase in simple passage experiments. We hypothesized that manipulating selection intensity at different scales would reveal virulence trade-offs in a fungal pathogen of aphids, <em>Akanthomyces muscarius</em>. Starting with a genetically diverse stock we selected for speed of kill, parasite yield, or infectivity by manipulating competition within and between hosts and between populations of hosts over 7 rounds of infection. We characterized ancestral and evolved lineages by whole genome sequencing and by measuring virulence, growth rate, sporulation, and fitness. While several lineages showed increases in virulence, we saw none of the trade-offs commonly found in obligately-killing parasites. Phenotypically similar lineages within treatments often shared multiple single-nucleotide variants, indicating strong convergent evolution. The most dramatic phenotypic changes were in the timing of sporulation and spore production <em>in vitro. </em>We found that early sporulation led to reduced competitive fitness but could increase the yield of spores on media, a trade-off characteristic of social conflict. Notably, the selection regime with the strongest between-population competition and lowest genetic diversity produced the most consistent shift to early sporulation, as predicted by social evolution theory. Multi-level selection therefore revealed social interactions novel to fungi and showed that these biocontrol agents have the genomic flexibility to improve multiple traits - virulence and spore production - that are often in conflict in other parasites.</p>
Direct synthesis, characterization, in vitro and in silico studies of simple chalcones as potential antimicrobial and antileishmanial agents
<p>Chalcone represents a vital biosynthetic scaffold owing to its numerous therapeutic effects. The present study was intended to synthesize seventeen chalcone derivatives <strong>(3a-q)</strong> by direct coupling of substituted acetophenones and benzaldehyde. The target chalcones were characterized by spectroscopic analyses followed by their <em>in vitro</em> antimicrobial, and antileishmanial investigations with reference to standard drugs. The majority of the chalcones displayed good to excellent biological activities. Chalcone <strong>3q</strong> (1000 μg/mL) exhibited the most potent antibacterial effect with its zone of inhibition values of 30, 33, and 34 mm versus <em>Staphylococcus aureus,</em> <em>Escherichia coli, and Pseudomonas aeruginosa </em>respectively. The results also confirmed chalcone <strong>3q</strong> to be the most potent versus <em>Leishmania major </em>with the lowest IC<sub>50</sub> value of 0.59±0.12 μg/mL.<em> </em>Chalcone <strong>3i</strong> (500 μg/mL) was noticed to be the most potent antifungal agent with its zone of inhibition being 29 mm against <em>Candida albicans</em>. Computational studies of chalcones <strong>3i </strong>and<strong> 3q</strong> supported the preliminary <em>in vivo</em> results. The existence of the amino moiety and bromine atom on ring-A and methoxy moieties on ring-B caused better biological effects of the chalcones. In brief, the investigations reveal that chalcones (<strong>3i </strong>and<strong> 3q) </strong>can be employed as building blocks<strong> </strong>to discover novel antimicrobial agents.</p>
Dataset, SPSS syntax, and SEM model for study 2 paper Implicit Agentic Narcissism
Open the record for dataset details and reuse information.
Data repository for study "Understanding agricultural market dynamics in times of crisis: the dynamic agent-based model Agrimate"
<p>Data for the study "Understanding agricultural market dynamics in times of crisis: the dynamic agent-based model Agrimate".</p> <p><strong>hindcasting_analysis</strong></p> <ul> <li>figures of the hindcasting exercise in the main text</li> <li>raw_data <ul> <li> raw model output data for <ul> <li>baseline scenario -- <em>agrimate_baseline=2007-2009_extra_regions=(Egypt=EGY)_regions=AgrimateEU28_start=2000-01-01.nc</em></li> <li>production failure scenario -- <em>agrimate_baseline=2007-2009_extra_regions=(Egypt=EGY)_production_anomalies=FAOsince-2005_regions=AgrimateEU28_start=2000-01-01.nc</em></li> <li>production failure and export restriction scenario -- <em>agrimate_baseline=2007-2009_export_restrictions=2007-2011_extra_regions=(Egypt=EGY)_production_anomalies=FAOsince-2005_regions=AgrimateEU28_start=2000-01-01.nc</em></li> </ul> </li> </ul> </li> </ul> <p><strong>multibreadbasket_analysis</strong></p> <ul> <li>figures of the multibreadbasket analysis in the main text</li> <li>raw_data <ul> <li> raw model output data for <ul> <li>simulations under historical climatic conditions with <number> as an identifier -- <em>agrimate_his-<number>.nc</em></li> <li>simulations under +2°C projection with <number> as an identifier -- <em>agrimate_2p0-<number>.nc</em></li> </ul> </li> </ul> </li> <li>processed_data <ul> <li>processed output data to easier/faster plot</li> </ul> </li> </ul> <p><strong>sensitivity_analysis</strong></p> <ul> <li>raw data and graphics as in <strong>main_output</strong> for different model parameters as given in Table F.1</li> </ul> <p> </p> <p> </p>
CodePori: Large Scale System for Autonomous Software Development by Using Multi-Agents
<p>This dataset accompanies the paper <strong>"CodePori: A Large-Scale System for Autonomous Software Development Using Multi-Agents."</strong> The dataset is recorded in an MS Excel file, which contains the following sheets, with a brief description of each provided below:</p> <ol> <li> <p><strong>Selected Projects:</strong> Contains the descriptions of the 20 selected projects along with the GitHub URL for each.</p> </li> <li> <p><strong>Modifications:</strong> Contains details of the modifications made to the projects to ensure successful execution.</p> </li> <li> <p><strong>Outputs:</strong> Contains the output for each project.</p> </li> <li> <p><strong>Failed Projects:</strong> Contains data on the projects that failed.</p> </li> </ol>
Autonomous Tester Agent Benchmark
<p>This is a benchmark for Autonomous Tester Agents. This benchmark is composed of a hundred test cases for 3 web applications written by professional testers. Half of the test cases are mutations of the original ones to better evaluate the capacity of agents to identify bugs. The test cases are composed of several steps that need precise assertion.</p> <p>An evaluation of the SeeAct model can also be found in the repository, as well as the source code to replicate the results. This repository is the replication package of a paper accepted to the ISSTA 2025 conference. (https://conf.researchr.org/home/issta-2025)</p>
Assessment of Degree of Conversion and Knoop Microhardness of Different Resin Cementing Agents - Results
<p>Data from the results of the study entitled "Assessment of Degree of Conversion and Knoop Microhardness of Different Resin Cementing Agents".</p>
Population genetics as a tool to elucidate pathogen reservoirs: Lessons from Pseudogymnoascus destructans, the causative agent of White-Nose disease in bats
<p>Emerging infectious diseases pose a major threat to human, animal, and plant health. The risk of species-extinctions increases when pathogens can survive in the absence of the host. Environmental reservoirs can facilitate this. However, identifying such reservoirs and modes of infection is often highly challenging. In this study, we investigated the presence and nature of an environmental reservoir for the ascomycete fungus <i>Pseudogymnoascus destructans</i>, the causative agent of White-Nose disease. Using 18 microsatellite markers, we determined the genotypic differentiation between 1,497 <i>P. destructans</i> isolates collected from nine closely situated underground sites where bats hibernate (i.e., hibernacula) in Northeastern Germany. This approach was unique in that it ensured that every isolate and resulting multi-locus genotype was not only present, but also viable and therefore theoretically capable of infecting a bat. The distinct distribution of multi-locus genotypes across hibernacula demonstrates that each hibernaculum has an essentially unique fungal population. This would be expected if bats become infected in their hibernaculum (i.e., the site they spend winter in to hibernate) rather than in other sites visited before they start hibernating. In one hibernaculum where both the walls and the hibernating bats were sampled at regular intervals over five consecutive winter seasons (1,062 isolates), higher genotypic richness was found on walls compared to bats and multi-locus genotypes showed a stable frequency over multiple winters. This clearly implicates hibernacula walls as the main environmental reservoir of the pathogen, from which bats become re-infected annually during hibernation.</p>
Supplementary material for an investigation of suitable healing agents for vascular-based self-healing in cementitious materials
<p>The data found here is related to the crack width measurements, capillary water absorption tests and mechanical tests performed in a study evaluating different types of healing agents for self-healing concrete.</p>
Spectral imaging enables contrast agent-free real-time ischemia monitoring in laparoscopic surgery
<p>Sample video showing the 'ischemia index' computed with a deep-learning model trained on multispectral images recorded during partial nephrectomy before a clamp is applied to the renal artery (perfused) and after clamping the artery (ischemic).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.