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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart [RNA-seq]
GEO Series GSE77588. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Binding domain mutations provide insight into CTCF's relationship with chromatin and its contribution to gene regulation (Omni-ATAC)
GEO Series GSE270626. Mus musculus. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-seq analysis of CTCF binding sites in lymphocyte subsets [pro-B cells]
GEO Series GSE41741. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Identification of cis elements for temporal and spatial control of DNA replication [Repli-Seq CTCF Auxin]
GEO Series GSE114622. Mus musculus. 8 samples. Type: Other.
Molecular Mechanism of Directional CTCF Recognition of a Diverse Range of Genomic Sites
GEO Series GSE103651. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dynamic network-guided CRISPRi screen reveals CTCF loop constrained enhancer function in cell state transitions
GEO Series GSE213394. Homo sapiens. 82 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
DNA methylation insulates exons from CTCF loops with nuclear speckles (HiChIP)
GEO Series GSE217754. Homo sapiens. 16 samples. Type: Other.
CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
GEO Series GSE60240. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Single base-pair resolution analysis of binding motif with diffMotif uncovers the oncogenic impact of CTCF mutations in breast cancer [RNA-Seq]
GEO Series GSE190114. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
CTCF binding polarity determines chromatin looping
GEO Series GSE72720. Mus musculus. 506 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters
GEO Series GSE157139. synthetic construct; Mus musculus. 138 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [scRNA-Seq]
GEO Series GSE269219. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Genetic analysis of cancer drivers reveals cohesin and CTCF as suppressors of PD-L1
GEO Series GSE189818. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
GEO Series GSE181694. Mus musculus. 25 samples. Type: Other.
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation IV
GEO Series GSE146454. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
ChIP-seq analysis of H3K4me3, H3K27ac and CTCF in undifferentiated and differentiated G1E-ER4 cells
GEO Series GSE139111. Mus musculus. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
GEO Series GSE24126. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding
GEO Series GSE135647. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Cut and Run from Caki-1, MCF7, and U251 cell lines with NRF1 and CTCF
GEO Series GSE240699. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei
GEO Series GSE237049. Xenopus laevis; Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.