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242
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ShareScore release 0.9.0
Dataset results
242 results for “Genetic mapping”
Genetic interaction mapping informs integrative structure determination of protein complexes
GEO Series GSE160350. Saccharomyces cerevisiae. 104 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Chromatin interaction maps of human arterioles reveal new mechanisms for the genetic regulation of blood pressure [snRNA-seq]
GEO Series GSE288694. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Mapping of Three Genetic Determinants of Susceptibility to Estrogen-Induced Mammary Cancer within the Emca8 Locus on Rat Chromosome 5
GEO Series GSE39788. Rattus norvegicus. 10 samples. Type: Expression profiling by array.
Genetic interaction mapping (GIM) for factors involved in RNA and protein synthesis and degradation
GEO Series GSE119174. Saccharomyces cerevisiae S288C; Saccharomyces cerevisiae. 312 samples. Type: Genome variation profiling by array.
Genetic regulatory mechanisms of smooth muscle cells map to coronary artery disease risk loci
GEO Series GSE113348. Homo sapiens. 60 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Proteome reference map of Haloarcula hispanica and comparative proteomic and transcriptomic analysis of polyhydroxyalkanoate biosynthesis under genetic and environmental perturbations
GEO Series GSE42800. Haloarcula hispanica. 6 samples. Type: Expression profiling by array.
Fine scale genetic mapping of a Hybrid Male Sterility factor between Drosophila simulans and D. mauritiana
GEO Series GSE25339. Drosophila melanogaster. 10 samples. Type: Expression profiling by array.
Mapping genotype-expression associations in Heterogeneous Stock rat brains to advance behavioral genetics research
GEO Series GSE173141. Rattus norvegicus. 435 samples. Type: Expression profiling by high throughput sequencing.
Expanded chromatin accessibility mapping explains genetic variation associated with complex traits in liver
GEO Series GSE277774. Homo sapiens. 189 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility [ATAC-seq]
GEO Series GSE272120. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of chromatin state (centromeric histone H3 variant CENP-A/Cnp1) in the meiotic progeny from the genetic crossing of mhf2∆ (cen1_inactive) × clr4∆ (cen1_active).
GEO Series GSE117960. Schizosaccharomyces pombe. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of chromatin state centromeric histone H3 variant CENP-A/Cnp1 in the meiotic progeny from the genetic crossings of mhf2+ (cen1_inactive) × mhf2+ (cen1_active) and mhf2∆ (cen1_inactive
GEO Series GSE131224. Schizosaccharomyces pombe. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions as well as expression analysis in various Arabidopsis genetic backgrounds
GEO Series GSE106944. Arabidopsis thaliana. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility [captureC]
GEO Series GSE272080. Homo sapiens. 6 samples. Type: Other.
Mapping the determinants of gene expression plasticity by genetical genomics in C. elegans
GEO Series GSE5395. Caenorhabditis elegans. 80 samples. Type: Expression profiling by array.
Endogenous fine-mapping of functional regulatory elements in complex genetic loci in HAP1 [CUT&Tag]
GEO Series GSE285718. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CGH mapping of Genetic Deficiencies balanced by sDp3 on LGIII
GEO Series GSE9413. Caenorhabditis elegans. 3 samples. Type: Genome variation profiling by genome tiling array.
3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility [HiC]
GEO Series GSE272172. Homo sapiens. 3 samples. Type: Other.
Mapping spatial organization and genetic cell state regulators to target immune evasion in ovarian cancer
<p>This collection of data accompanies the study: <a href="https://www.nature.com/articles/s41590-024-01943-5">Yeh, Aguirre, Laveroni <em>et al.</em> <strong>Mapping spatial organization and genetic cell-state regulators to target immune evasion in ovarian cancer. </strong>(2024). </a><em><strong><a href="https://www.nature.com/articles/s41590-024-01943-5">Nature Immunology</a>.</strong></em> Files are provided in the form of RObjects (extension .rds) or tabulated data (extension .csv) to reproduce the results and figures provided in the paper via the the R programming environment using Code provided <a href="https://github.com/Jerby-Lab/HGSC_SpatialPerturbational">here</a>. </p> <p> </p> <p>Data collected and processed and published as a part of this study of tubo-ovarian high grade serous carcinoma (HGSC) includes: </p> <ul> <li>~<strong>2.5 million single cell spatial transcriptomics profiles</strong> from <strong>130 HGSC tumors</strong> of <strong>94 patients</strong></li> <li>Matching de-identified <strong>clinical annotations</strong> and clinical outcomes.</li> <li>Matching <strong>targeted genomic data</strong> from the bulk tumor tissues.</li> <li><strong>Perturb-seq CRISPR knockout</strong> data in ovarian cancer cells in monoculture and co-culture with Natural Killer (NK) cells.</li> </ul> <p>The spatial transcriptomics, Perturb-Seq, and matched H&E (Hematoxylin & Eosin, where available) are also provided via the Single Cell Portal with an <strong>interactive interface</strong> (<a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2640/hgsc-spatial-cohort-discovery-dataset">SCP2640</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2641/hgsc-spatial-cohort-validation-1-dataset">SCP2641</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2650/hgsc-spatial-cohort-validation-2-dataset">SCP2650</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2644/hgsc-spatial-cohort-test-1-dataset">SCP2644</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2646/hgsc-spatial-cohort-test-2-dataset">SCP2646</a>, <a href="https://singlecell.broadinstitute.org/single_cell/study/SCP2707/hgsc-spatial-study-perturb-seq">SCP2707</a>).</p> <p>The collection also includes previously published data that was analyzed and used in this study to examine the generalizability of the findings, evaluate immunotherapy predictors, and for data-driven experimental design.</p> <p>The SeuratObj.zip contains six SeuratObjects matching the five spatial transcriptomcs datasets (Discovery, Validation 1, Validation 2, Test 1 and Test 2) and Perturb-Seq data.</p> <p>The Yeh2024.zip file includes the study's data and additional datasets/results to reproduce the study's figures. A detailed description of the files included in the repository is provided in `README.txt` and `README.xlsx`</p>
Enhanced Linkage Maps From Family-Based Genetics Studies
ClinicalTrials.gov study NCT00049868. IPD Sharing: Not stated. Countries: 0. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.