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Data supporting 3D Super-resolution Optical Fluctuation Imaging with Temporal Focusing with two-photon excitation
<p>Data to support the publication combining temporal focusing two photon excitation with super-resolution optical fluctuation imaging.</p> <div>This research was funded by National Centre of Science, grant number: 2022/47/B/ST7/03465. For the purpose of Open Access, the author has applied a</div> <div>CC-BY public copyright licence to any author Accepted Manuscript (AAM) version arising from this submission</div>
DFT Calculated xyz and log Files as well as csv Files for Machine Learning in Support of "Tailoring Phosphine Ligands for Improved C H Activation: Insights from Δ-Machine Learning"
<p>Transition metal complexes have played crucial roles in various homogeneous catalytic processes due to their exceptional versatility. This adaptability stems not only from the central metal ions but also from the vast array of choices of the ligand spheres, which form an enormously large chemical space. For example, Rh complexes, with a well-designed ligand sphere, are known to be efficient in catalyzing the C-H activation process in alkanes. To investigate the structure-property relation of the Rh complex and identify the optimal ligand that minimizes the calculated reaction energy ΔE of an alkane C-H activation, we have applied a Δ-Machine Learning method trained on various features to study 1,743 pairs of reactants (Rh(PLP)(Cl)(CO)) and intermediates (Rh(PLP)(Cl)(CO)(H)(propyl)). Our findings demonstrate that the models exhibit robust predictive performance when trained on features derived from electron density (R<sup>2 </sup>= 0.816), and SOAPs (R<sup>2 </sup>= 0.819), a set of position-based descriptors. Leveraging the model trained on xTB-SOAPs that only depend on the xTB-equilibrium structures, we propose an efficient and accurate screening procedure to explore the extensive chemical space of bisphosphine ligands. By applying this screening procedure, <a>we identify ten newly selected reactant-intermediate pairs with an average ΔE </a>of 33.2 kJ mol<sup>-1</sup>, remarkably lower than the average ΔE of the original data set of 68.0 kJ mol<sup>-1</sup>. This underscores the efficacy of our screening procedure in pinpointing structures with significantly lower energy levels.</p> <p>_______________________________________________________________________</p> <p>The dataset contains three file types:</p> <p>Version 1.0:</p> <ol> <li>xyz files of the final optimized Rh-phosphine complexes; one set for the starting materials denoted as "molecule-XXXX_4-times" and one set for the intermediates after C-H activation denoted as "molecule-XXXX_6-times"</li> <li>Gaussian16 log files for the optimization process; one set for the starting materials denoted as "molecule-XXXX_4-times" and one set for the intermediates after C-H activation denoted as "molecule-XXXX_6-times"</li> <li>csv files containing the per molecule features used for training the different machine learning models. The name of the csv files indicates which property was predicted and which model was used</li> </ol> <p>New in version 1.1 (other data is unchanged):</p> <ol> <li>Gaussian16 log files for the ten newly identified bisphosphine ligands; one set for the product material denoted as "LXX_6-times-axial" and one set for the transition state for the C-H activation denoted as "LXX_C-H-activation_TS"</li> </ol>
Dataset supporting the paper: Deciphering Oxygen Distribution and Hypoxia Profiles in the Tumor Microenvironment: A Data-Driven Mechanistic Modeling Approach
<p>The necessary image files for the paper titled "Deciphering Oxygen Distribution and Hypoxia Profiles in the Tumor Microenvironment: A Data-Driven Mechanistic Modeling Approach"</p>
Structural Inheritance in the Eastern Cordillera, NW Argentina: Low‐Temperature Thermochronology of the Cianzo Basin - Supporting Information
<p>Supporting information accompanying the publication "Structural Inheritance in the Eastern Cordillera, NW Argentina: Low‐Temperature Thermochronology of the Cianzo Basin" published in Tectonics. The dataset contains (U-Th-Sm)/He and apatite fission track data from the Cianzo Basin, Jujuy, Argentina, and accompanying figures.</p> <p>Table S1 contains full single-grain results from apatite (AHe) and zircon (ZHe) (U-Th-Sm)/He analyses. Table S2 and S3 contain AFT results including full counting data from apatite fission track (AFT) analyses.</p> <p>Figure S1 supports AHe and ZHe data with plots showing relationships between cooling ages, eU, Ft and ESR. Figures S2–S4 support AFT data with radial plots.</p>
Supporting Information for "New 3D velocity model (mTAB3D) for absolute hypocenter location in southern Iberia and the westernmost Mediterranean"
<p>These files comprise supplementary information for the paper entitled "New 3D velocity model (mTAB3D) for absolute hypocenter location in southern Iberia and the westernmost Mediterranean" (Sánchez-Roldán et al., 2024a)</p> <p>These results were obtained after performing a relocation using the 3D P-wave velocity model mTAB3D (Sánchez-Roldán et al. 2024b).</p> <p>In "Files.zip", we provide the eight files with the absolute locations and the uncertainty parameters (extracted from the 68% confidence ellipse of the PDF’s) obtained after performing the relocation using mIGN1D and mTAB3D. The absolute location files follow this format:</p> <p>origin_time(YYYY-mm-ddTHH:MM:SS) longitude(º) latitude(º) depth(km) magnitude(mbLg)</p> <p>• origin_time: Hypocenter’s origin time after the relocation.</p> <p>• longitude: Hypocenter’s longitude in decimal degrees after the relocation.</p> <p>• latitude: Hypocenter’s latitude in decimal degrees after the relocation.</p> <p>• depth: Hypocenter’s depth in kilometers.</p> <p>• magnitude: Hypocenter’s magnitude (mbLg) computed by the Spanish Seismic Network.</p> <p>The files with the uncertainty values:</p> <p>horizontal_uncertainty(km) vertical_uncertainty(km) rms(s) no_arrivals</p> <p>• horizontal_uncertainty: Obtained after computing the geometrical mean between the horizontal semi-minor and semi-major axes of the 68% confidence ellipse in kilometers.</p> <p>• vertical_uncertainty: Vertical semi-axis of the 68% confidence ellipse.</p> <p>• rms: root-mean-square of residuals at maximum likelihood or expectation hypocenter.</p> <p>• no_arrivals: number of readings used for the absolute location.</p> <p><br>File S1. File_S1.dat: Eastern Betics Shear Zone catalog’s absolute locations with mIGN1D.</p> <p>File S2. File_S2.dat: Eastern Betics Shear Zone catalog’s statistics with mIGN1D.</p> <p>File S3. File_S3.dat: Eastern Betics Shear Zone catalog’s absolute locations with mTAB3D.</p> <p>File S4. File_S4.dat: Eastern Betics Shear Zone catalog’s statistics with mTAB3D.</p> <p>File S5. File_S5.dat: Al Hoceima 2016 catalog’s absolute locations with mIGN1D.</p> <p>File S6. File_S6.dat: Al Hoceima 2016 catalog’s statistics with mIGN1D.</p> <p>File S7. File_S7.dat: Al Hoceima 2016 catalog’s absolute locations with mTAB3D.</p> <p>File S8. File_S8.dat: Al Hoceima 2016 catalog’s statistics with mTAB3D.</p> <p>Additionally, we provide two figures showing the location of those hypocenters (alboran.jpg and ebsz.jpg), which are included as Figures 3 and 5, respectively, in Sánchez-Roldán et al. (2024a).</p> <p>References:</p> <p><span>Sánchez-Roldán, J. L.</span>, <span>Álvarez-Gómez, J. A.</span>, <span>Martínez-Díaz, J. J.</span>, <span>Herrero-Barbero, P.</span>, <span>Perea, H.</span>, <span>Cantavella, J. V.</span>, & <span>Lozano, L.</span> (<span>2024a</span>). <span>New 3D velocity model (mTAB3D) for absolute hypocenter location in southern Iberia and the westernmost mediterranean</span>. <em>Earth and Space Science</em>, <span>11</span>, e2023EA00299. <a href="https://doi.org/10.1029/2023EA002993">https://doi.org/10.1029/2023EA002993</a></p> <p>Sánchez-Roldán, J. L., Álvarez-Gómez, J. A., Martínez-Díaz, J. J., Herrero-Barbero, P., Perea, H., Lozano, L., & Cantavella, J. V. (2024b). MTAB3D: a 3-D velocity model for absolute hypocenter location in southern Iberia and westernmost Mediterranean. (v1.0) [Data set]. Zenodo. <a href="https://doi.org/10.5281/zenodo.7766525" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.7766525</a></p> <div> </div> <p> </p> <p> </p>
Supporting data for "Forest carbon uptake as influenced by snowpack and length of photosynthesis season in seasonally snow-covered forests of North America"
<p>This is a supporting dataset for the paper :</p> <div> <div>Yang, J. C., Bowling, D. R., Smith, K. R., Kunik, L., Raczka, B., Anderegg, W. R. L., Bahn, M., Blanken, P. D., Richardson, A. D., Burns, S. P., Bohrer, G., Desai, A. R., Arain, M. A., Staebler, R. M., Ouimette, A. P., Munger, J. W., and Litvak, M. E.: Forest carbon uptake as influenced by snowpack and length of photosynthesis season in seasonally snow-covered forests of North America, Agricultural and Forest Meteorology, 353, 110054, <a href="https://doi.org/10.1016/j.agrformet.2024.110054">https://doi.org/10.1016/j.agrformet.2024.110054</a>, 2024.</div> </div> <p>Descriptions and units for each column can be found in a dedicated page within the data file. Methods are decribed in the paper.</p>
Data supporting "Transformer Model Generated Bacteriophage Genomes are Compositionally Distinct from Natural Sequences"
<p>Sequence and composition data supporting doi: <a href="https://doi.org/10.1101/2024.03.19.585716" target="_blank" rel="noopener">10.1101/2024.03.19.585716</a>. Uncompressed file size is ~5.8GB.</p> <p>Data in zip files is organized by sequence provenance (generRNA, natural, or transformer (megaDNA)). Common file types between folders include:</p> <ul> <li>Multi-record fasta file: Sequence data for all sequences of a given provenance. For generRNA sequences, these are found within the `seq` column of file "MFE_distribution_Fig4a.csv"</li> <li>Composition files: Individual sequence level compositional metrics for sliding 120 bp windows. Only structural metrics were used in this study.</li> <li>Genomad: Results from the genomad pipeline (https://portal.nersc.gov/genomad/)</li> <li>Stats: Aggregate statistics for all sequences of a given provenance.</li> </ul> <p>The natural folder also has a metadata file detailing the taxonomy for all natural sequences.<br><br>Figure datasets are the cleaned (sometimes aggregated) datasets that underly specific figures in the manuscript. The figure designations are based on the order in: https://www.biorxiv.org/content/10.1101/2024.03.19.585716v1.</p>
Raw (main) dataset for the paper "Decision Support Systems Adoption in Pesticide Management"
<p>Raw dataset for farmer responses to a survey on the decision support systems adoption for intergrated pest management in the framework of the EU funded project IPM Decisions.</p>
EXAFS spectra during formation of palladium oxides in alumina supported palladium nanoparticles
<p>This dataset contain extended X-ray absorption fine structure (EXAFS) spectra for 5%Pd/Al2O3 (named TO326) and 2%Pd/P4VP (named TO203) samples, measrured in situ with high time resolution during exposre of the samples to hydrogen and oxygen flows at different temperatures. The file Parameters.txt contain sample names, temperatures and times together with structural parameters obtained from EXAFS fitting. File Spectra.txt contain normalized EXAFS spectra (as rows) for each energy point (energies shown in the first row). Each row in Parameters.txt correspond to a row (spectrum) in Spectra.txt</p>
Supporting Movies from: Seismo-acoustic observations of crashing ocean waves: Investigating surf monitoring at Coal Oil Point Reserve, Santa Barbara, California
<div> <div> <div> <p>This repository includes supplementary movies from the manuscript titled, "Seismo-acoustic observations of crashing ocean waves: Investigating surf monitoring at Coal Oil Point Reserve, Santa Barbara, California," submitted to the Journal of Geophysical Research: Solid Earth.</p> <p> </p> <p>Movies S1 and S2. These two movies taken during array deployment 4 on October 20, 2023 show the NW tip of Coal Oil Point at the left of the field of view and Sands Beach northwest of that toward the right. Frames have the same figure layout as Figure 4 of the main text.</p> <p>Movie S3. Same as Movies S1 and S2 but with the NW tip of Coal Oil Point at the right of the field of view and Devereux Beach southeast of that toward the left.</p> </div> </div> </div>
Model results: Model-based decision support for the choice of active spring frost protection measures in apple production
<p><strong>Background: </strong></p> <p>Apple producers are dealing with weather related risks affecting their production. One important risk, is the damage of buds or young fruits by late spring frosts. Fruit growers can protect their apple orchards against this risk in various ways. With a probabilistic model (available on Git Hub: <a href="https://github.com/ChristineSchmitz/Supporting_Information_DA_Frost_Protection">https://github.com/ChristineSchmitz/Supporting_Information_DA_Frost_Protection</a>, <a href="https://doi.org/10.5281/zenodo.11473204">https://doi.org/10.5281/zenodo.11473204</a>), we want to support the decision between several active frost protection measures. The measures considered in the model are: overhead irrigation, below-canopy irrigation, stationary wind machines, mobile wind machines, tractor-mounted gas heaters, portable gas heaters, candles and pellet heaters.</p> <p>As case studies, we parameterized the model for two German apple production regions (Rhineland and Lake Constance region).</p> <p><strong>Repository content:</strong></p> <p>This repository contains the simulation results of 100,000 Monte Carlo runs with the model.</p> <p>The results are provided as .RDS and .csv files. The .RDS files are suitable to be uses with the Code on Git Hub to follow the Post-Hoc analysis and figure plotting.</p>
Data supporting: Combined stress of an insecticide and heatwaves or elevated temperature induce community and food web effects in a Mediterranean freshwater ecosystem
<p>Data used to obtain the results of the research paper entitled: "Combined stress of an insecticide and heatwaves or elevated temperature induce community and food web effects in a Mediterranean freshwater ecosystem", published in the journal "Water Research". The data derives from an outdoor (meso-) cosm experiment in Spain (Imdea Water, Alcala de Henares) in which the transportable temperature and heatwave control device (TENTACLE) was used to investigate the multiple stressors effects of two different climate change scenarios related to temperature (i.e., elevated temperature and reoccurring heatwaves) in combination with the neonicotinoid insecticide imidacloprid.</p>
Dense vegetation hinders sediment transport towards saltmarsh interiors - Supporting data and source code (Part IV: Post-processing)
<p>This is Part IV of the supporting data and source code for the paper entitled "Dense vegetation hinders sediment transport towards saltmarsh interiors", submitted to <em>Limnology and Oceanography Letters.</em> It contains all input and output files for the post-processing of all model results.</p> <p>To be able to run the scripts as is, the folder structure should be as follows:</p> <p>Runs (includes all model run folders from Part II and Part III)<br>Post/Basic/Channels<br>Post/Basic/Cross_sections<br>Post/Basic/Integrals<br>Post/Basic/Median_neighborhood_analysis (includes all unzipped MNA_TIGER_XX.zip folders)<br>Post/Basic/Skeleton_clean<br>Post/Basic/Skeleton_final<br>Post/Basic/Skeleton_raw<br>Post/Basic/Unchanneled_path_length<br>Post/Basic/Watersheds<br>Post/Basic/Scenarios.txt<br>Post/Basic/TIGER_2km_5m.slf<br>Post/Paper_1/Erosion-deposition<br>Post/Paper_1/Fluxes<br>Post/Paper_1/Profiles<br>Post/Paper_1/Std</p>
Multiscale analysis of triglycerides with X-ray scattering: Implementing a shape-dependent model for CNP characterization - Supporting Dataset
<p>This dataset contains the files used to substantiate the outcomes of the publication "<em>Multiscale analysis of triglycerides with X-ray scattering: Implementing a shape-dependent model for CNP characterization</em> <em>" </em></p> <p>The dataset includes:</p> <ul> <li>X-ray scattering profiles - in absolute units</li> <li>Images used to measure CNP distributions</li> </ul> <p>Relevant abbreviations: </p> <ul> <li>SSS - Tristearin</li> <li>OOO - Triolein</li> <li>FHRO - Fully Hydrogenated Rapeseed Oil</li> <li>HOSO - High Oleic Sunflower Oil</li> </ul>
Investigating the Role of CNP and CNP aggregates in the Rheological Breakdown of Triglyceride Systems - Supporting Dataset
<p>This dataset contains the files used to substantiate the outcomes of the publication "<em>Investigating the Role of CNP and CNP Aggregates in the Rheological Breakdown of Triglyceride Systems" </em></p> <p>The dataset includes:</p> <ul> <li>X-ray scattering 2D profiles </li> <li>Thixotropy results</li> </ul> <p>Relevant abbreviations: </p> <ul> <li>SSS - Tristearin</li> <li>PPP - Tripalmitin</li> <li>FHRO - Fully Hydrogenated Rapeseed Oil</li> <li>PS - Palm Stearin</li> </ul>
Supporting Online Data for 'Timber trade in the United States of America 1870 to 2017. A socio-metabolic analysis'
<p>This data file (.xlsx) contains all data used to create tables and figures of the study "Timber trade in the United States of America 1870 to 2017. A socio-metabolic analysis". Main article is available under: https://doi.org/10.1080/01615440.2024.2316039</p>
A tool to support FastFlow program design
<p>We describe the implementation of ff-RPL, a shell to support structured parallel programming development in FastFlow. The shell provides ways to explore the space of functionally equivalent, alternative parallel implementations of the same application with different non functional properties. The tool is entirely written in C++ and has been designed in such a way it can be easily extended to take into account new non functional features, refactoring and optimization rules, as well as different parallel patterns. Preliminary experimental results are shown relatively to the code generation part.</p>
Supporting Datasets produced in Allen et al. (2018) Global Estimates of River Flow Wave Travel Times and Implications for Low-Latency Satellite Data"
<p><strong>Supporting datasets for Allen et al. (2018) - Global Estimates of River Flow Wave Travel Times and Implications for Low-Latency Satellite Data, <em>Geophysical Research Letters</em>, <a href="https://doi.org/10.1002/2018GL077914">https://doi.org/10.1002/2018GL077914</a></strong></p> <p>The code used to produce these data is available as a Github repository, permanently hosted on Zenodo: <a href="https://doi.org/10.5281/zenodo.1219784">https://doi.org/10.5281/zenodo.1219784</a></p> <p><strong>Abstract</strong></p> <p>Earth-orbiting satellites provide valuable observations of upstream river conditions worldwide. These observations can be used in real-time applications like early flood warning systems and reservoir operations, provided they are made available to users with sufficient lead time. Yet, the temporal requirements for access to satellite-based river data remain uncharacterized for time-sensitive applications. Here we present a global approximation of flow wave travel time to assess the utility of existing and future low-latency/near-real-time satellite products, with an emphasis on the forthcoming SWOT satellite. We apply a kinematic wave model to a global hydrography dataset and find that global flow waves traveling at their maximum speed take a median travel time of 6, 4 and 3 days to reach their basin terminus, the next downstream city and the next downstream dam respectively. Our findings suggest that a recently-proposed ≤2-day latency for a low-latency SWOT product is potentially useful for real-time river applications.</p> <p> </p> <p><strong>Description of repository datasets:</strong></p> <p>1. riverPolylines.zip contains ESRI shapefile polylines of river networks with outputs from main analysis. These continental-scale shapefiles contain the following attributes for each river segment:</p> <ul> <li>"ARCID" : unique identifier for each river segment line, defined as the river reach between river junctions/heads/mouths. The first 10 attributes are taken from Andreadis et al. (2013): https://doi.org/10.5281/zenodo.61758</li> <li>"UP_CELLS" : number of upstream cells (pixels)</li> <li>"AREA" : upstream drainage area (km<sup>2</sup>)</li> <li>"DISCHARGE" : discharge (m<sup>3</sup>/s)</li> <li>"WIDTH" : mean bankfull river width (m)</li> <li>"WIDTH5" : 5th percentile confidence interval bankfull river width (m)</li> <li>"WIDTH95" : 95th percentile confidence interval bankfull river width (m)</li> <li>"DEPTH" : mean bankfull river depth (m)</li> <li>"DEPTH5" : 5th percentile bankfull river depth (m)</li> <li>"DEPTH95" : 95th percentile confidence bankfull river depth (m)</li> <li>"LENGTH_KM" : segment length (km)</li> <li>"ORIG_FID" : original ID of segment</li> <li>"ELEV_M" : lowest elevation of segment (m). Derived from HydroSHEDS 15 sec hydrologically conditioned DEM: https://hydrosheds.cr.usgs.gov/datadownload.php?reqdata=15demg </li> <li>"POINT_X" : longitude of lowest point of segment (WGS84, decimal degrees)</li> <li>"POINT_Y" : latitude of lowest point of segment (WGS84, decimal degrees)</li> <li>"SLOPE" : average slope of segment (m/m)</li> <li>"CITY_JOINS" : an index associated with how likely a city/population center is located on the segment. Population center data from: http://web.ornl.gov/sci/landscan/ and http://www.naturalearthdata.com/downloads/10m-cultural-vectors/10m-populated-places/ </li> <li>"CITY_POP_M" : population of joined city (max N inhabitants) </li> <li>"DAM_JOINSC" : an index associated with how likely a dam is located on the segment. Dam data from Global Reservoir and Dam (GRanD) Database: http://www.gwsp.org/products/grand-database.html </li> <li>"DAM_AREA_S" : surface area of joined dam (m<sup>2</sup>)</li> <li>"DAM_CAP_MC" : volumetric capacity of joined dam (m<sup>3</sup>)</li> <li>"CELER_MPS" : modeled river flow wave celerity (m/s)</li> <li>"PROPTIME_D" : travel time of flow wave along segment (days)</li> <li>"hBASIN" : main basin UID for the hydroBASINS dataset: http://www.hydrosheds.org/page/hydrobasins</li> <li>"GLCC" : Global Land Cover Characterization at segment centroid: https://lta.cr.usgs.gov/glcc/globdoc2_0 </li> <li>"FLOODHAZAR" : flood hazard composite index from the DFO (via NASA Sedac): http://sedac.ciesin.columbia.edu/data/set/ndh-flood-hazard-frequency-distribution</li> <li>"SWOT_TRAC_" : SWOT track density (N overpasses per orbit cycle @ segment centroid). Created using SWOTtrack SWOTtracks_sciOrbit_sept15 polygon shapefile, uploaded here.</li> <li>"UPSTR_DIST" : upstream distance to the basin outlet (km) </li> <li>"UPSTR_TIME" : upstream flow wave travel time to the basin outlet (days)</li> <li>"CITY_UPSTR" : upstream flow wave travel time to the next downstream city (days)</li> <li>"DAM_UPSTR_" : upstream flow wave travel time to the next downstream dam (days)</li> <li>"MC_WIDTH" : mean of Monte Carlo simulated bankfull widths (m)</li> <li>"MC_DEPTH" : mean of Monte Carlo simulated bankfull depths (m)</li> <li>"MC_LENCOR" : mean of Monte Carlo simulated river length correction (km)</li> <li>"MC_LENGTH" : mean of Monte Carlo simulated river length (m)</li> <li>"MC_SLOPE" : mean of Monte Carlo simulated river slope (-)</li> <li>"MC_ZSLOPE" : mean of Monte Carlo simulated minimum slope threshold (m)</li> <li>"MC_N" : mean of Monte Carlo simulated Manning’s n (s/m^(1/3))</li> <li>"CONTINENT" : integer indicating the HydroSHEDS region of shapefile</li> </ul> <p>2. hydrosheds_connectivity.zip contains network connectivity CSVs for river polyline shapefiles. The tables do not contain headers:</p> <ul> <li>Col1: segment unique identifier (UID) corresponding to the ARCID column of the riverPolylines shapefiles</li> <li>Col2: Downstream UID</li> <li>Col3: Number of upstream UIDs</li> <li>Col4 – Col12: Upstream UIDs</li> </ul> <p>3. SWOTtracks_sciOrbit_sept15_density.zip contains a polygon shapefile derived from SWOTtracks_sciOrbit_sept15_completeOrbit containing the sampling frequency of SWOT (number of observations per complete orbit cycle). Polygon attributes correspond to each unique shape formed from overlapping swaths:</p> <ul> <li>FID : unique identifier of each polygon</li> <li>CENTROID_X : polygon centroid longitude (WGS84 - decimal degrees)</li> <li>CENTROID_Y : polygon centroid latitude (WGS84 - decimal degrees)</li> <li>COUNT_count: SWOT sampling frequency (N observations per complete orbit cycle)</li> </ul> <p>4. USGS_gauge_site_information.csv : table containing the list of USGS sites analyzed in the validation and obtained from http://nwis.waterdata.usgs.gov/nwis/dv Header descriptions contained within table. </p> <p>5. validation_gaugeBasedCelerity.zip contains polyline ESRI shapefiles covering North and Central America, where USGS gauges provided gauge-based celerity estimates. These files have FIDs and attributes corresponding to riverPolylines shapefiles described above and also contrain the folllowing fields:</p> <ul> <li>GAUGE_JOIN : an index associated with how likely a gauge is located on the segment. Gauge location information is contained in USGS_gauge_site_information.csv</li> <li>GAUGE_SITE: USGS gauge site number of joined gauge</li> <li>GAUGE_HUC8: which hydrological unit code the gauge is located in</li> <li>OBS_CEL_R: gauge-based correlation score (R). Upstream and downstream gauges were compared via lagged cross correlation analysis. The calculated celerity between the paired gauges were assigned to each segment between the two gauges. If there were multiple pairs of upstream and downstream gauges, the the mean celerity value was assigned, weighted by the quality of the correlation, R. Same weighted mean was applied in assigning R. </li> <li>OBS_CEL_MPS: gauge-based celerity estimate (m/s). </li> </ul> <p>6. tab1_latencies.csv contains data shown in Table 1 of the manuscript.</p> <p>7. figS3S4_monteCarloSim_global_runMeans.csv contains the mean of the Monte Carlo simulation inputs and outputs shown in Figure S3 and Figure S4. Column headers descriptions are given in riverPolylines (dataset #1 above). Some columns have rows with all the same value because these variables did not vary between ensemble runs.</p> <p>8. figS5_travelTimeEnsembleHistograms.zip contains data shown in Figure S5. Each csv corresponds to a figure component:</p> <ul> <li>tabdTT_b.csv : basin outlet travel times for all rivers</li> <li>tabdTT_b_swot.csv : basin outlet travel times for SWOT</li> <li>tabdTT_c.csv : next downstream city travel times for all rivers</li> <li>tabdTT_c_swot.csv : next downstream city travel times for SWOT</li> <li>tabdTT_d.csv : next downstream dam travel times for all rivers</li> <li>tabdTT_d_swot.csv : next downstream dam travel times for SWOT</li> </ul>
Supporting data for "A 2x2 quantum dot array with controllable inter-dot tunnel couplings"
<p>Supporting data and analysis scripts for all figures in in "A 2x2 quantum dot array with controllable inter-dot tunnel couplings", arXiv:1802.05446 (preprint)</p> <p>This dataset contains a readme file, a data file in hdf5 format containing all the relevant datasets, and a python script file that can be used to access, analyse and plot the datasets in the data file, reproducing the plots in the figures presented in the manuscript.</p>
Supporting data for "Fundamental limitations of cavity-assisted atom interferometry"
<p>Supporting data with code to generate Fig. 2 Cavity-induced deformation of a Gaussian input. Publication: DOI:https://doi.org/10.1103/PhysRevA.96.053820</p> <p>arXiv:1710.02448</p> <p>This dataset contains a zip file with raw data sets of all relevant measurements to plot figure 2.</p> <p>Figure 2. Envelope functions of the intracavity field for a 1 m cavity injected with<br> a 1μs pulse for different cavity finesses. All areas are normalized<br> to the input pulse area for comparison. When the pulse duration is<br> comparable to the photon lifetime of the cavity, its envelope function<br> is elongated. Inset: Envelopes without normalization.</p> <p> </p> <p>Further data and information are available from Miguel Dovale <mdovale@star.sr.bham.ac.uk> at reasonable request.</p> <p>School of Physics and Astronomy and Institute of Gravitational Wave Astronomy, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.