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4,144 results for “ITS barcode”
Fig. 7 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 7. Aphelopus zaifui Olmi, Chen & Liu sp. nov. A–E. Holotype, ♂ (SCAU 3042343). A. Habitus, dorsal view. B. Mesosoma, dorsal view. C. Head, dorsal view. D. Head, frontal view. E. Head and mesosoma, lateral view. F. Paratype, ♂ (SCAU 3042339), mesosoma, dorsal view.
Fig. 3 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 3. Aphelopus incognitus Chen, Olmi & Guglielmino sp. nov., ♂, holotype (SCAU 3011673). A. Habitus, dorsal view. B. Habitus, lateral view. C. Head, frontal view. D. Head and mesosoma, dorsal view.
Fig. 6 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 6. Aphelopus taianensis Olmi, Ødegaard & Chen sp. nov., ♂, holotype (SCAU 3011647). A. Habitus, dorsal view. B. Habitus, lateral view. C. Mesosoma, dorsal view. D. Head, anterodorsal view.
Fig. 5 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 5. Aphelopus maculiala Olmi, Chen & Ødegaard sp. nov., ♂, holotype (SCAU 3040513). A. Habitus, dorsal view. B. Habitus, lateral view. C. Head and mesosoma, dorsal view. D. Head, dorsal view. E. Head, frontal view. F. Fore wing, arrow shows infuscate patch beneath pterostigma.
Fig. 2 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 2. Maximum likelihood tree demonstrating the clustering of Aphelopus Dalman, 1823 COI barcodes. Bootstraps values of 50 and above are indicated.
Fig. 4 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 4. Aphelopus incognitus Chen, Olmi & Guglielmino sp. nov., ♀, paratype (SCAU 3011794). A. Habitus, dorsal view. B. Habitus, lateral view. C. Head, dorsal view. D. Head and mesosoma, dorsal view.
State of biodiversity documentation in the Philippines: Metadata gaps, taxonomic biases, and spatial biases in the DNA barcode data of animal and plant taxa in the context of species occurrence data
<p>These files can be categorized into three groups: (1) raw datasets obtained from public databases (i.e., GBIF, BOLD, and GenBank), (2) manually edited files needed for parsing and analysis, and (3) supplementary files for spatial analysis. All are used in the examination of gaps and biases present in Philippine biodiversity data, which can direct research on the taxa and spatial regions that need more sampling.</p>
Development of thrips barcode database and multiplex real-time PCR assay for quarantine and agriculture pest species
<p>Thrips (Order Thysanoptera) species are agriculturally important as plant sap sucking pests and vectors of several plant diseases. They are very small insects and commonly associated with imported commodities at New Zealand border in all life stages. Morphological identification of thrips is mainly performed on adults, but the available identification keys for immature stages do not include many species and are inadequate, thus DNA barcode was regularly used for thrips identification, here, we have generated DNA barcode data for over 29 thrips species from over 100 individuals. At New Zealand border,<em> Frankliniella occidentalis </em>is the dominant species intercepted, followed by <em>F. panamensis</em>, <em>Thrips palmi</em> and <em>T. tabaci </em>and several other thrips species. Hence, we have also developed a multiplex real time PCR assay, targeting the four thrips species to facilitate the identification of quarantine interceptions with more accurate and faster diagnostic method for any developmental stages. The DNA barcode database further assists in thrip identification. The assay showed high specificity for all the four target species and could detect 10 copies/ µL of the target DNA. Linear responses and high correlation coefficients between the amount of DNA and <em>C</em><sub>q</sub> values for each species were also achieved. The method was tested on single egg, larva and adult and proved to be applicable for all life stages of the four species. This study has demonstrated the assay is a useful biosecurity tool for rapid and reliable identification of the target thrips species. </p>
Fig. 3 in Application Of Dna Barcoding In Taxonomy And Phylogeny: An Individual Case Of Coi Partial Gene Sequencing From Seven Animal Species
Fig. 3. Phylogenetic position of Macrobiotus sp., Bayesian inference phylogenetic tree. Sequences obtained by us are written in bold.
Fig. 1 in Application Of Dna Barcoding In Taxonomy And Phylogeny: An Individual Case Of Coi Partial Gene Sequencing From Seven Animal Species
Fig. 1. Phylogenetic position of D. lindholmi and L. a. exigua, Bayesian inference phylogenetic tree. Sequences obtained by us are written in bold.
Towards a DNA barcode library for Madagascar's threatened ichthyofauna
<p>Supplementary documents, trees and curated DNA barcode library dataset for freshwater and marine fishes from Madagascar, in XLSX, tab-delimited and Fasta formats.</p>
Mosquito Tagging Using DNA-Barcoded Nanoporous Protein Microcrystals
<p>Contains raw data for the publication titled 'Mosquito Tagging Using DNA Barcoded Nanoporous Protein Microcrystals'.</p>
Supplemental files to "A COI DNA Barcode Library for Anastrepha Schiner (Diptera: Tephritidae)"
<p>The attached files are the supplemental material from Moore et al., "A COI DNA Barcode Library for <em>Anastrepha </em>Schiner (Diptera: Tephritidae)". They contain various DNA sequence alignments, calculation tables, tree files, taxonomic information on <em>Anastrepha</em>, and a R script.</p>
FIGURE 1 in Comparisons of two cryptic Ampedus species (Coleoptera: Elateridae) by using classical systematics, ecological niche modeling, and DNA barcoding
FIGURE 1. Habitus photos and aedeagi drawings of examined species. A-B. Ampedus platiai, C-D. A. samedovi, E-F. A. pomonae (Aedeagi of A. platiai and A. samedovi are redrawn from Kabalak 2010 and aedeagus of A. pomonae is redrawn from Platia 1994.). BML: Basal struts of median lobe, BP: Basal piece, ML: Median Lobe, PDT: Paramere distal tooth, PR: Paramere.
FIG. 4 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 4. — Some examples of endemic earthworm species sampled in Corsica and their habitats (to their right): A, Scherotheca portonana L4 Qiu & Bouché, 1998; B, alpine pasture at Col de Vergio (Bouché#466); C, Scherotheca albomaculata Qiu & Bouché, 1998; D, open Mediterranean chaparral at Sainte-Lucie de PortoVecchio (Bouché#414); E, Eumenescolex emiliae L1 Qiu & Bouché, 1998; F, Pinus laricio L. forest at Zonza (Bouché#2932); G, Hormogaster insularis Bouché, 1970; H, Quercus suber L. open wood at Volpajola (Bouché#480). Scale bars: 5 cm.
FIG. 2 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 2. — Bayesian inference of the phylogenetic relationships of earthworms from Corsica based on their COI sequences. Species-level genetic lineages (as delimited by ASAP, barcode gap analysis and morphological data) are shown as black triangles in order to facilitate visualization and to display the amount of intra-lineage genetic divergence (indicated by the height of the triangle). Green circles: posterior probability values over 90; all the species-level clades showed values close to 100.
FIG. 1 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 1. — Distribution map of the sampling localities in Corsica Island. Locality codes refer to Table 1. Map base: Qgis.
FIG. 5 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 5. — Observed and estimated species diversity of earthworms in the island of Corsica: A, incidence-based rarefaction and extrapolation curves of species numbers;B, Chao asymptotic estimator of species numbers. The figure compares the results obtained when considering all species-level lineages obtained with DNA barcodes (All), when considering non-cryptic lineages only (NC) and when considering all endemic lineages (End). Solid lines represent rarefaction curves, whereas dashed lines represent extrapolation curves; shaded areas are 95% and error bars confidence intervals based on a bootstrap with 200 replications.
FIG. 3 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 3. — Graphical representation of the number of earthworm species known from Corsica. Rectangle surfaces are proportional to species numbers.
Figure 4 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 4 Teutonia corsicanasp. nov., ♂ [CCDB 38559 F09], Ruisseau de Battesta, France: A – coxal and genital field, partial view; B – photograph of ejaculatory complex; C – palp, medial view; D – gnathosoma. Scale bars = 100 μm.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.