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Fig. 1 in Difference in the abundance of scale insect parasitoids among four cardinal directions
Fig. 1. Abundance of Coccophagus lycimnia captured with yellow sticky cards at the cardinal directions on willow oaks in (A) South Carolina and (B) Virginia. E = East, N = north, S = south, W = west.
Fig. 4 in Myxosporean parasites in Australian frogs: Importance, implications and future directions
Fig. 4. Hypothetical life cycle and transmission routes of Cystodiscus species. Understanding of the life cycle and timing of infection will provide invaluable information to wildlife disease managers to mitigate the impact of myxosporean parasite. The majority of myxosporean parasite life cycles alternate between a vertebrate host and an invertebrate host, in the case of Cystodiscus it is frogs and an unknown invertebrate (green box) (1). The vertebrate host sheds myxospores (grey square, right) that infect an invertebrate host that produces actinospores (grey square, left) (2). Actinospores are the infective stages for vertebrate hosts (frogs). It is unknown at what stage of development amphibians are susceptible to infection (3), Cystodiscus spp. have been found in both tadpoles and adults. It is possible that spawn, tadpole, metamorph or an adult frog can be infected by actinospores (red arrows, green outlined square). It is unknown if infection can be shed during development or if it is passed on during metamorphosis or spawning (blue arrows, green outlined square).
Fig. 2 in Myxosporean parasites in Australian frogs: Importance, implications and future directions
Fig. 2. Emergence of Cystodiscus parasites across eastern Australia from 1960–2011. All locations (red square) represent records for Cystodiscus spp. from one or more frogs. Both published and unpublished data were used to compile the distribution map (Delvinquier, 1986; Hartigan et al., 2010;, 2012a, 2012b, 2012c, 2012d; Supplementary Table 1). The data are split into 1960–1990 (A) and 1991–2011 (B) to show recent records in western New South Wales and South Australia.
Fig. 1 in Myxosporean parasites in Australian frogs: Importance, implications and future directions
Fig. 1. Summary of myxosporean parasites recorded in Australian frogs. The frog species are sorted according to IUCN Red List conservation status [http:// www.iucnredlist.org/], note, the Cane toad (Rhinella marina) is listed as exotic pest species introduced to Australia in 1935. Myxosporean frog host species belong to three out of five frog families present in Australia; genus Litoria (family Hylidae), Limnodynastes (family Myobatrachidae) and Rhinella (family Bufonidae). Distribution for each species in Australia (black) is shown according to Frogs Australia [www.frogs.org.au]. Myxosporean development and myxospores are shown as column under each frog species. For Cystodiscus species either brain (CNS) or liver development is shown in form of a histological section and line drawing of myxospore. Spore measurements according to Hartigan et al. 2012b for C. australis 15·0–18·0 × 8·0–10·0 µm, for C. axonis 13·0–15·0 × 8·0–10·0 µm. For Myxobolus species gonad development is shown in form of a histological section and line drawing of myxospore. Absence of a record of development or myxospores is shown as – not known. Presence of myxospores, but absence of a record of development is shown as – likely (not seen). Development of M. hylae has been published by (Johnston and Bancroft (1918) and (Berger, 2001. Diseases in Australian frogs. PhD thesis, James Cook University, Townsville), but not recorded by authors during 2007–2011. M. fallax spore measurements according to Browne et al. 2002 12.6–14.6 × 8.3–10.6 µm (no noticeable variation between fresh and formalin fixed material). M. hylae myxospores according to Johnston and Bancroft (1918) measured 8–10 × 7–8 µm. L. lesueuri, L. raniformis and L. castanea photos courtesy of David Hunter.
Fig. 3 in Myxosporean parasites in Australian frogs: Importance, implications and future directions
Fig. 3. Cystodiscus species and Myxobolus species of frogs. Worldwide records of described Cystodiscus species (blue) based on gallbladder myxospores and Myxobolus species (orange) based on myxospores in gonad of amphibians. Note: Only descriptions down to species level are included, i.e., Myxobolus sp. are not included.
Figure 3. Graph created directly from the results.-Browsing Semantic Data in Slovakia
<p>Resulting graph is rather complex. There are 175 vertices and 201 edges, which were created directly, containing 158 persons and 17 companies. As we see on Figure 3, some filtering methods are required in order to create suitable overview of relations. Figure 4 thus shows the visualization of the same graph, but with tens of vertices merged. Now it contains 22 persons and 17 companies. A merging was performed for clarification and is built inside the visualization module. A simple condition says that a merging is performed if persons are unique, thus if a person is connected only to 1 firm. More formally, person vertices are merged, if their vertex degree equals 1 (each).</p>
Data and R scripts for the paper "New Evidence for a Directed Forgetting Effect in Source Memory and a Role of Source Feature Intrinsicality in the Item-Method"
<p>Data and R scripts from Experiment 1 and 2 of the paper "New Evidence for a Directed Forgetting Effect in Source Memory and a Role of Source Feature Intrinsicality in the Item-Method".</p>
Data on Direct-to-Consumer Genetic Testing and DNA testing companies
<p>This table was compiled between 2011 and 2018. It is a list of companies offering direct-to-consumer DNA tests over the internet. It is primarily concerned with direct-to-consumer genetic testing companies operating currently and also includes those, which are no longer operating. The table briefly summarizes the services offered by each company and gives the company’s location.</p> <p>I am continuing to update this list, so it is a work in progress, it does include some companies that advertise their services to physicians and some companies may have altered their offerings. Further updates will be provided later in 2018. I have added a shorter table at the end of relevant other companies. I hope to make a searchable database of a revised version of the document available through my website in the future.</p> <p>This work is being released for informational and educational purposes and should not be used for commercial purposes.</p> <p>Please refer to my website for further updates <a href="http://www.andelkamphillips.com">http://www.andelkamphillips.com</a></p>
Datasets of the paper "Retrieval-Mediated Directed Forgetting in the Item-Method Paradigm: The Effect of Semantic Cues"
<p>Data sets and analyses scripts of the paper "Retrieval-Mediated Directed Forgetting in the Item-Method Paradigm: The Effect of Semantic Cues".</p>
New Ideas for Brain Modelling 4-Figure 4. LHS relates to neuron binding ensemble mass, with central column activated. RHS relates to hierarchy, with a direct mapping. The two red lines show where the ensemble is missing and so it needs to be learned. The blue lines show extra neurons from the hierarchy back to the ensemble, but can be removed as error. The other paired black squares represent where the patterns match and can oscillate together.
<p>This paper continues the research that considers a new cognitive model based strongly on the human brain, last updated in Greer (2016). In particular, it considers figure 4 of that paper (Figure below) and how it might be useful in practice. The paper also describes some new methods in the areas of image processing and behaviour simulation. The image processing introduces a most classical form of pattern cross-referencing, while the behaviour equations used feedback for a memory-type of cross-referencing. The work is all based on earlier research by the author and the new additions are intended to fit in with the overall design. For image processing, a grid-like structure is used with ‘full linking’, if you like. Each cell in the classifier grid stores a list of all other cells it gets associated with and this is used as the learned image that new input is compared with. For the behaviour metric, a new prediction equation is suggested, as part of a simulation, that uses feedback and history to dynamically determine its current state and course of action. While the new methods are from widely different topics, both can be compared with the binary-analog type of interface that is the main focus of the paper. Sensory input may be static and binary, but cross- references result in variable comparisons that make the input more dynamic. It is suggested that the simplest of linking between a tree and ensemble can explain neural binding and variable signal strengths.</p>
Transcranial direct current stimulation (tDCS) over the left prefrontal cortex does not affect time-trial self-paced cycling performance: Evidence from oscillatory brain activity and power output.
<p>This research will shed new light into the bidirectional relationship between acute aerobic exercise, brain and cognition. This is based on the particular role of executive (cognitive) function during exercise. The rationale of our study is that stimulation of the prefrontal cortex that has been repeatedly associated with executive function, would facilitate or impair self-paced aerobic exercise. This would also affect cognitive performance immediately after exercise. We will use a modified flanker’s task as a form of assessing executive function (see below for further details). The flanker’s task implies two different stimuli, one congruent and one incongruent. Relative to “congruent” stimuli, these “incongruent” stimuli are usually accompanied by increased response times (RTs) and decreased accuracy. To stimulate the prefrontal cortex, we use transcranial direct-current stimulation (tDCS). tDCS is able to induce cortical changes by hyperpolarizing (anodal) or depolarizing (cathodal) neuron’s resting membrane potential.<br> Therefore, the hypotheses of this research are:<br> 1) Anodal stimulation (relative to sham and cathodal stimulation) will improve self-paced aerobic exercise and, consequently it will also improve subsequent cognitive performance.<br> 2) Cathodal stimulation (relative to sham and anodal stimulation) will impair self-paced aerobic exercise and subsequent cognitive performance.<br> </p>
Research data supporting "A robust liposomal platform for direct colorimetric detection of sphingomyelinase enzyme and inhibitors"
<p>Raw research data supporting the publication: Holme, M. N. et al., ACS Nano, 2018, DOI: 10.1021/acsnano.8b03308.</p>
Dataset for article Direct Evidence of the Benzylium and Tropylium Cations as the Two Long-Lived Isomers of C7H7+
<p>Dataset for article Direct Evidence of the Benzylium and Tropylium Cations as the Two Long-Lived Isomers of C7H7+ (DOI: 10.1002/cphc.201800744)</p> <p>-1- Experimental data: raw data and python script to build the final data for Figs 1 and 2 of the main manuscript and Figs S1 and S2 of supporting information.</p> <p>-2- Computational results: Gaussian files for all the calculated species.</p>
Dataset of "What Should Developers Be Aware Of? An Empirical Study on the Directives of API Documentation"
<p>Dataset of <em>What Should Developers Be Aware Of? An Empirical Study on the Directives of API Documentation</em> (Martin Monperrus, Michael Eichberg, Elif Tekes, Mira Mezini), In Empirical Software Engineering, Springer, 2011.</p> <p><br> * dataset-src.tar.bz2 contains the source code of the Java libraries used as raw data.<br> * dataset.xml.bz2 contains the API documentation extracted from source code.<br> * directives.xml.bz2 contains the API directives found during the exploratory case study.<br> * directive-appendix.pdf is a human-readable PDF version of directives.xml.bz2.<br> <br> All datasets are published under the Creative Commons Attribution License: if you use them, please cite:<br> </p>
3D Taylor-Green vortex Direct Numerical Simulation statistics from Re=1250 to Re=20000
<p>Statistical data for the 3D Taylor Green flow from Re=1250 to Re=20000 obtained with the flow solver <a href="https://www.incompact3d.com/">Incompact3d</a>. </p> <p># ===========================================================================================<br> # When publishing results using this data, the following paper should be cited as the source: <br> # Thibault Dairay, Eric Lamballais, Sylvain Laizet and John Christos Vassilicos<br> # Numerical dissipation vs. subgrid-scale modelling for large eddy simulation<br> # Journal of Computational Physics 337 (2017) 252–274<br> # https://doi.org/10.1016/j.jcp.2017.02.035<br> # ===========================================================================================</p> <p># Column 1 : time t<br> # Column 2 : kinetic energy E_k [=(u^2+v^2+w^2)/2]<br> # Column 3 : dissipation epsilon_t [=-dE_k/dt]<br> # Column 4 : dissipation epsilon [= nu ((du/dx)^2+(du/dy)^2+(du/dz)^2+(dv/dx)^2+(dv/dy)^2+(dv/dz)^2+(dw/dx)^2+(dw/dy)^2+ dw/dz)^2)]<br> # Column 5 : enstrophy Dzeta [=2 nu epsilon]<br> # Column 6 : mean square u^2<br> # Column 7 : mean square v^2<br> # Column 8 : mean square w^2<br> # Column 9 : mean square (du/dx)^2<br> # Column 10 : mean square (du/dy)^2<br> # Column 11 : mean square (du/dz)^2<br> # Column 12 : mean square (dv/dx)^2<br> # Column 13 : mean square (dv/dy)^2<br> # Column 14 : mean square (dv/dz)^2<br> # Column 15 : mean square (dw/dx)^2<br> # Column 16 : mean square (dw/dy)^2<br> # Column 17 : mean square (dw/dz)^2</p>
Qualitative Interview Data: Users and therapists perceptions of myoelectric multi-function upper limb prostheses with direct and pattern recognition control
<p>The data uploaded here were collected in 2016/2017 through semi-structured interviews with prosthesis users and hand therapists. Participants were mainly asked about satisfaction with their prosthetic device and about activities which they perform with the prosthesis. Interviews were conducted in Dutch and German language.</p> <p>All interview data are made publicly available, except for data of prosthesis users who were experienced with pattern recognition control (n=4). Due to the small number of these participants, their interview data is only available upon reasonable request to not compromise participant privacy. </p> <p> </p>
AEROARMS - Crawler Direct Detection Image Dataset
<p>Dataset containing images and ground-truth position of the crawler used in the AEROARMS project experiments.</p>
Data used in "Utilizing the Heliophysics/Geospace System Observatory to Understand Particle Injections: Their Scale Sizes and Propagation Directions"
<p>These are the raw data files for the data used in the paper, "Utilizing the Heliophysics/Geospace System Observatory to Understand Particle Injections: Their Scale Sizes and Propagation Directions" by Gabrielse et al. They can be read using the SPEDAS software found here: http://themis.ssl.berkeley.edu/software.shtml. Tplot variables, which are specifically read and plotted by SPEDAS, are included for pertinent THEMIS data.</p>
Redistribution of the map with the Special Areas of Conservation in Flanders with respect to Directive 92/43/EEC (status 2013-01-18)
<p>This is a redistribution of a subdataset of the data source '<a href="http://www.geopunt.be/catalogus/datasetfolder/a84a87f5-5607-4019-a8db-9d52a827786b">Habitatrichtlijn(deel)gebieden</a>' (Special Areas of Conservation), originally published by 'Agentschap Natuur en Bos' (Agency Nature and Forest) and distributed by 'Informatie Vlaanderen' under a CC-BY compatible license. It is redistributed for reproducible, analytical workflows on Flemish Natura 2000 habitats and regionally important biotopes.</p> <p>This dataset contains the delimitation of the Special Areas of Conservation (SAC) with respect to the EC Habitats Directive (92/43/EEC) as approved by the Flemish government on 4 May 2001, ratified on 24 May 2002 and published in the Belgian Official Gazette on 17 August 2002. On 15 February 2008, the Flemish Government also proposed the water zone of the IJzer and Scheldt estuary to the Commission as additional areas of Community interest. After public investigation, the Flemish government decides on January 15, 2013 (published in the Belgian Official Gazette on February 4, 2013) to finalize the delimitation of the sub-area 11 'Boterakker' of the special protection zone BE2200037 'Uiterwaarden van de Limburgse Maas met Vijverbroek' as SAC in application of the Habitats Directive. This zone is now being proposed to the European Commission as an additional area of Community interest. The Habitats Directive aims to preserve biodiversity in the EU Member States and seeks to conserve and restore the natural habitats and the wild fauna and flora that are part of them. The most important measure is the designation of Special Areas of Conservation.</p> <p>This subdataset is a shapefile of geospatial polygons that delimit the (subareas of the) Special Areas of Conservation in the Flemish region with respect to the European directive 92/43/EEC, identical to the shapefile <code>ps_hbtrl_deel</code> in the original data source.</p> <p>The data source is produced, owned and administered by the Agency Nature and Forest of the Flemish government.</p>
Figures, plotting scripts, and data for "A fast, low-cost, and stable memory algorithm for implementing multicomponent transport in direct numerical simulations"
<p>This dataset contains the figures, as well as the necessary plotting scripts and data to reproduce them, for the article "A fast, low-cost, and stable memory algorithm for implementing multicomponent transport in direct numerical simulations" by Aaron J. Fillo, Jason Schlup, Guillaume Beardsell, Guillaume Blanquart, and Kyle E. Niemeyer (2019). In addition, the code used to generate the eigenvalues in Table 1 is included.</p> <p>The scripts were run in Matlab 2019a, though none of the versions used should be version-dependent. Furthermore, non-standard functions are included with dependencies hard-coded. We used export_fig (https://github.com/altmany/export_fig) to generate high-quality figures, and redistribute the version used here for reproducibility (export_fig was developed by Oliver J. Woodford and Yair M. Altman, and made available openly under the BSD 3-Clause License).</p> <p>The code included in this dataset is released under the BSD 3-Clause License (see LICENSE.txt for details), other than the source of export_fig, as described. The figures are shared under the Creative Commons Attribution 4.0 International License (CC BY 4.0, https://creativecommons.org/licenses/by/4.0/).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.