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409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
SETDB1 Fuels the Lung Cancer Phenotype by Modulating Epigenome, 3D Genome Organization, and Chromatin Mechanical Properties
GEO Series GSE168233. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Hierarchical role for transcription factors and chromatin structure in genome organization along adipogenesis
GEO Series GSE92475. Mus musculus. 15 samples. Type: Other.
Roadmap and Considerations for Genome Editing in a Non-model Organism: Genetic Variations and Off-target Profiling
GEO Series GSE281095. Macrobrachium rosenbergii. 32 samples. Type: Other.
Genome organization controls transcriptional dynamics during development
GEO Series GSE171396. Drosophila melanogaster. 16 samples. Type: Other.
Correlated alterations in genome organization, histone methylation, and DNA-lamina interactions in Hutchinson-Gilford progeria syndrome (ChIP-seq)
GEO Series GSE41757. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptional programs of cell identity and p53-induced stress responses are associated with distinctive features of spatial genome organization [ChIP-seq]
GEO Series GSE278977. Homo sapiens. 80 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
de novo re-construction of the core genome from ChIP-Seq for large-genome organisms
GEO Series GSE107827. Oryza sativa; Triticum aestivum; Oryza sativa Japonica Group; Oryza sativa Indica Group. 26 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Tunable DNMT1 degradation reveals cooperation of DNMT1 and DNMT3B in regulating DNA methylation dynamics and genome organization
GEO Series GSE251935. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
The dynamic three-dimensional organization of the diploid yeast genome
GEO Series GSE88952. Saccharomyces cerevisiae; Saccharomyces paradoxus; Saccharomyces paradoxus x Saccharomyces uvarum; Saccharomyces uvarum; Saccharomyces cerevisiae x Saccharomyces uvarum; Saccharomyces cerevisiae x Saccharomyces paradoxus. 44 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Linkage of genomic biomarkers to whole organism endpoints in a Toxicity Identification Evaluation (TIE)
GEO Series GSE41463. Ampelisca abdita. 151 samples. Type: Expression profiling by array.
Viral oncogene manipulates YY1 to alter host 3D genome organization and promote B cell proliferation
GEO Series GSE277748. Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Chromatin states and genomic organization impact replication timing and local patterns [ATAC-seq]
GEO Series GSE176495. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation [RNA-Seq]
GEO Series GSE185469. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
A primary hierarchically organized patient-derived model enables in depth interrogation of stemness driven by the coding and non-coding genome [RNA-Seq]
GEO Series GSE211595. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing.
Three-dimensional folding and functional organization principles of the Drosophila genome
GEO Series GSE34453. Drosophila melanogaster. 2 samples. Type: Other.
Transcriptional programs of cell identity and p53-induced stress responses are associated with distinctive features of spatial genome organization [RNA-seq]
GEO Series GSE278979. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses
GEO Series GSE37743. Vitis vinifera. 7 samples. Type: Expression profiling by high throughput sequencing.
Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories
GEO Series GSE133885. Brassica napus; Triticum aestivum. 10 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Genome Organization Drives Chromosome Fragility [END-seq]
GEO Series GSE99194. Mus musculus; Mus spretus; Homo sapiens. 32 samples. Type: Other.
Nuclear speckles as a key regulator for the 3D genome organization
GEO Series GSE131466. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.