Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
307
datasets available to search
ShareScore release 0.9.0
Dataset results
307 results for “nuclear DNA”
Data from: Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid
PREMISE OF THE STUDY: We explored the phylogenetic utility of entire plastid DNA sequences in Daucus and compared the results with prior phylogenetic results using plastid and nuclear DNA sequences. METHODS: We used Illumina sequencing to obtain full plastid sequences of 37 accessions of 20 Daucus taxa and outgroups, analyzed the data with phylogenetic methods, and examined evidence for mitochondrial DNA transfer to the plastid (DcMP). KEY RESULTS: Our phylogenetic trees of the entire data set were highly resolved, with 100% bootstrap support for most of the external and many of the internal clades, except for the clade of D. carota and its most closely related species D. syrticus. Subsets of the data, including regions traditionally used as phylogenetically informative regions, provide various degrees of soft congruence with the entire data set. There are areas of hard incongruence, however, with phylogenies using nuclear data. We extended knowledge of a mitochondrial to plastid DNA insertion sequence previously named DcMP and identified the first instance in flowering plants of a sequence of potential nuclear genome origin inserted into the plastid genome. There is a relationship of inverted repeat junction classes and repeat DNA to phylogeny, but no such relationship with nonsynonymous mutations. CONCLUSIONS: Our data have allowed us to (1) produce a well-resolved plastid phylogeny of Daucus, (2) evaluate subsets of the entire plastid data for phylogeny, (3) examine evidence for plastid and nuclear DNA phylogenetic incongruence, and (4) examine mitochondrial and nuclear DNA insertion into the plastid.
Figure 1 in May a hybridogenetic complex regenerate the nuclear genome of both sexes of a missing ancestor? First evidence on the occurrence of a nuclear non-hybrid Squalius alburnoides (Cyprinidae) female based on DNA sequencing
Figure 1. Minimum spanning network among cytb haplotypes. The majority of the haplotypes (represented by circles) are exclusive of Squalius alburnoides (in grey) and of S. pyrenaicus (in white) individuals, except for the central one which is a haplotype shared between one S. alburnoides and two S. pyrenaicus individuals. NH indicates the haplotype of the non-hybrid female. The number of mutations between haplotypes is represented by small black dots.
The mitochondrial protease OMA1 acts as a metabolic safeguard upon nuclear DNA damage
<p>The provided Dataset contains the liquid-chromatography mass spectrometry (LC-MS) raw files (3 zipped files containing the Thermo .raw files) and one zipped file containing three tables extracted containing the peak information (Compound ID, expected RT (min), Filename, Injection Volume (uL), peak height, peak area, actual RT (min), RT Delta, formula, adduct, m/z (Expected), m/z (Apex), m/z (Delta in ppm) and S/N (signa-to-noise)) of the steady state and the 13C6 glucose-traced metabolite measurements for the above mentioned (see title) publication in Cell Reports.</p> <p>The data was measured using either anion-chromatography coupled to high resolution mass spectrometry (for anionic compounds, including intermediates from the TCA cycle, glycolysis, pentose phosphate pathway and nucleotides) or ultra high performance liquid chromatography coupled to high resolution mass spectrometry (amine-containing compounds, including amino acids and polyamines). The methods used for extracting and analyzing the samples are described in detail in the above mentioned publication. The data deposited here is shown in figure 7a and b and figure S7a, b and c.</p> <p> </p> <p> </p>
Data from: Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes
Open the record for dataset details and reuse information.
Data from: Phylogenetic relationships of Agaric fungi based on nuclear large subunit ribosomal DNA sequences
Open the record for dataset details and reuse information.
Data from: Ribosomal RNA gene repeats associate with the nuclear pore complex for maintenance after DNA damage
Open the record for dataset details and reuse information.
Data from: Targeted multiplex next-generation sequencing: Advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
Open the record for dataset details and reuse information.
Data from: Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid
Open the record for dataset details and reuse information.
Data from: Speciation history of three closely related oak gall wasps, Andricus mukaigawae, A. kashiwaphilus, and A. pseudoflos (Hymenoptera: Cynipidae) inferred from nuclear and mitochondrial DNA sequences
Open the record for dataset details and reuse information.
A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the cascade frogs, genus Amolops (Anura: Ranidae)
Open the record for dataset details and reuse information.
Elimination of mitochondrial DNA variants by nuclear genome transfer in human oocytes
GEO Series GSE42077. Homo sapiens. 11 samples. Type: Expression profiling by array.
Loss of function of the nuclear envelope protein LEMD2 causes DNA damage-dependent cardiomyopathy
GEO Series GSE194218. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Elimination of mitochondrial DNA variants by nuclear genome transfer in human oocytes.
GEO Series GSE42271. Homo sapiens. 15 samples. Type: Genome variation profiling by SNP array.
Extrachromosomal DNA Associates with Nuclear Condensates and Reorganizes Chromatin Structures to Enhance Oncogenic Transcription
GEO Series GSE275060. Homo sapiens. 117 samples. Type: Other.
TNF induces Glucocorticoid Resistance by reshaping the GR Nuclear Cofactor Profile: Investigation of TNF mediated effects on the GR-DNA binding
GEO Series GSE123953. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CDK12 catalytic activity is rate-limiting for RNAPII processivity on core DNA replication genes and G1/S progression (nuclear RNA)
GEO Series GSE120071. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Histone demethylase KDM4B promotes DNA damage by activating long interspersed nuclear element-1
GEO Series GSE121642. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Regions of Focal DNA Hypermethylation and Long-Range Hypomethylation in Colorectal Cancer Coincide with Nuclear Lamina-Associated Domains
GEO Series GSE32399. Homo sapiens. 2 samples. Type: Methylation profiling by high throughput sequencing.
Nuclear PKCq binding to DNA in T lymphocytes.
GEO Series GSE61241. Homo sapiens. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Interactions between mitochondrial and nuclear DNA in mammalian cells are non-random
GEO Series GSE77610. Mus musculus. 3 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.