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Stem maps of eight 1 ha forest plots distributed around Ann Arbor, MI and around the University of Michigan Biological Station (UMBS)
In this project we established a network of forest inventory plots to gather the data needed to forecast future forest performance under global change. Data collected from forest inventory plots, i.e., size and location of individual trees from all ages and species, have been shown to be particularly useful to link tree species demographic rates (survival, growth, age at maturity, fecundity) with community characteristics (assemblages and species turnovers), and are also widely used to estimate biomass removal (logging) and biomass production (carbon sequestration).
Fine woody debris inventory data from reference stands and inventory plots in the Pacific Northwest, 1992 to 2000
These data provide an inventory of the mass of downed fine woody debris stored within various forest types. This data is used to determine total organic matter, carbon, and nutrient stores in forests.
Multiple biogeochemical variables were measured for organic and mineral soils on Arctic LTER experimental plots in moist acidic and non-acidic tundra, Arctic LTER Toolik Field Station, Alaska 2013.
Measures of soil nutrient content (available N and P, Extractable N and P, Total C, N and P), and microbial biomass and activity (exoenzyme activity) were measured for organic and mineral soils on Arctic LTER experimental plots at Toolik field station in moist acidic and non-acidic tundra (organic soils only).
Air and soil temperature in warmed and control plots of 2014 reciprocal transplant gardens Toolik Lake, Coldfoot, and Sagwon, Alaska 2015 and 2016
Air and soil temperatures from iButtons located at reciprocal transplant gardens at Toolik Lake, Coldfoot, and Sagwon in 2015 and 2016. The reciprocal transplant gardens at Coldfoot (CF), Toolik Lake (TL), Sagwon (SG) Each plot contains three tussocks, 30-50 centimeters apart
Soil and canopy temperature data from the Arctic LTER Moist Acidic Tussock Experimental plots (MAT89) from 2012 to 2018, Toolik Field Station, North Slope, Alaska
Soil and canopy temperature data from the Arctic LTER 1989 Moist Acidic Tussock Experimental plots(MAT89). The station was established in 1990 in block 2 of a 4 block random block design. The plots are located on a hillside near Toolik Lake, Alaska (68 38' N, 149 36'W). Treatments include - control (CT), greenhouse (GH), greenhouse plus nitrogen and phosphorus (GHNP) shade (SH), shade plus nitrogen and phosphorus (SHNP) and nitrogen and phosphorus (NP). Profiles include above and within canopy, 10, 20 and 40 centimeter soil depths. Not all treatments have a complete profile. Meteorological data was also collected but are included in a separate data set.
Relative percent cover and leaf nutrients was measured for plant species on Arctic LTER experimental plots in moist acidic and non-acid tundra, Arctic LTER Toolik Field Station, Alaska 2015
Relative percent cover was measured for plant species on Arctic LTER experimental plots at Toolik field station in moist acidic and non-acidic tundra in greenhouse and control plots. Leaf percent carbon, percent nitrogen and percent phosphorus were collected from dominant species in greenhouse and control plots on Arctic LTER experimental plots at Toolik field station in moist acidic, non-acidic tundra, wet sedge and shrub tundra
Soil biogeochemical variables collected on the Arctic LTER experimental plots in moist acidic, moist non-acidic, wet shrub and shrub tundra, Arctic LTER Toolik Field Station, Alaska 2015
We investigated the effect of long-term warming on multiple soil and microbial carbon, nitrogen, and phosphorus pools, and microbial extracellular enzyme activities, with a particular focus on phosphorus, in Alaskan tundra plots underlain by permafrost
Eriophorum tiller length in simulated herbivory experiment in moist acidic tundra experimental plots, Arctic LTER, Toolik Field Station, North Slope Alaska, from 2018 to 2021.
Tiller length of Eriophorum vaginatum subjected to fertilization and simulated herbivory from 2018 until 2021. Plants were part of a fertilization experiment begun in 2006 and included four levels of nutrient addition. For the simulated herbivory experiment, plants were not clipped, clipped once in 2018, or clipped every year of the experiment.
Dark respiration and photosynthesis data from Dry Heath Nitrogen & Phosphorus addition plots, Arctic LTER, Toolik Field Station, Alaska, summers 2023-2024.
To determine the effects of weather variability on Arctic plant functioning, we conducted this study looking at the response of plant dark respiration and photosynthesis to short-term, high-frequency, temperature and light variability. We measured Betula nana, Chamaenerion angustifolium, and Calamagrostis stricta from the dry heath tundra N&P fertilized plots. We took measurements through two summer seasons. The first summer we obtained data regarding responses to variable temperature and light, and in the second summer we obtained the dark respiration to temperature response and photosynthesis to light response curves.
Data from nitrogen isotopic analyses used to calculate biological nitrogen fixation (BNF) rates and field measurements from lichen, bryophyte, litter, and soil samples in MAT2006 plots, Arctic LTER, Toolik Field Station, Alaska, summers 2022-2023.
This dataset contains nitrogen (N) fixation and isotope data from experimental samples collected at Toolik Lake, Alaska during the 2022 and 2023 growing seasons. Sampling was conducted across multiple block treatments to capture spatial variability and included four substrate types: lichen, moss, litter, and soil. Within each plot, substrates were collected systematically along transects to ensure representative sampling, with lichen samples collected opportunistically due to lower abundance. Samples were incubated in the field under ambient conditions using 15N₂ to measure biological nitrogen fixation (BNF). In 2023, a short-term wetting experiment was conducted to assess the influence of moisture on BNF rates, with subsamples exposed to controlled additions of water. Across both years, data include isotope ratios, incubation conditions, moisture, fresh and dry biomass, and treatment assignments. The dataset provides information on BNF across substrate types, moisture regimes, and fertilization treatments in Arctic tundra. These data support investigation of N cycling processes, the influence of moisture and fertilization on fixation rates, and variability across vegetation types. The dataset is complete for the two field seasons (2022 and 2023) and includes sample- and block-level metadata necessary for reuse in ecological and biogeochemical research.
Baltimore Ecosystem Study: Soil solution chemistry data from long-term study plots
The Baltimore Ecosystem Study (BES) has established a network of long-term permanent biogeochemical study plots. These plots will provide long-term data on vegetation, soil and hydrologic processes in the key ecosystem types within the urban ecosystem. The current network of study plots includes eight forest plots, chosen to represent the range of forest conditions in the area, and four grass plots. These plots are complemented by a network of 200 less intensive study plots located across the Baltimore metropolitan area. Plots are currently instrumented with lysimeters (drainage and tension) to sample soil solution chemistry, time domain reflectometry probes to measure soil moisture, dataloggers to measure and record soil temperature and trace gas flux chambers to measure the flux of carbon dioxide, nitrous oxide and methane from soil to the atmosphere. Measurements of in situ nitrogen mineralization, nitrification and denitrification were made at approximately monthly intervals from Fall 1998 - Fall 2000. Detailed vegetation characterization (all layers) was done in summer 1998. Data from these plots has been published in Groffman et al. (2006, 2009) and Groffman and Pouyat (2009). In November of 1998 four rural, forested plots were established at Oregon Ridge Park in Baltimore County northeast of the Gwynns Falls Watershed. Oregon Ridge Park contains Pond Branch, the forested reference watershed for BES. Two of these four plots are located on the top of a slope; the other two are located midway up the slope. In June of 2010 measurements at the mid-slope sites on Pond Branch were discontinued. Monuments and equipment remain at the two plots. These plots were replaced with two lowland riparian plots; Oregon upper riparian and Oregon lower riparian. Each riparian sites has four 5 cm by 1-2.5 meter depth slotted wells laid perpendicular to the stream, four tension lysimeters at 10 cm depth, five time domain reflectometry probes, and four trace gas flux chambers in the
Plethodon study from removal plots located at the Coweeta Hydrologic Laboratory
Recent research shows Plethodon shermani and Plethodon teyahalee within the hybrid zone at the Coweeta LTER in Otto, North Carolina forage heavily on ants (>50% of all prey items consumed; found in 94% of samples). As most vascular plants in the Southern Appalachians rely on ants for seed dispersal, this significant predation on ants, especially Aphaenogaster, reveals an intriguing and important relationship between these salamanders and the vascular plant abundance and distribution within their ecosystem. Additionally, consumption of ants increases with high temperatures and low relative humidity indicating that, with climate change, the effects of Plethodon foraging behavior on woodland biodiversity will be amplified. Using a paired design, we placed removal plots along an elevational gradient within the plethodon shermani-teyahalee hybrid zone at the Coweeta LTER to observe and quantify the effect of Plethodon foraging on ant communities, seed dispersal, and vascular plant distribution by removing the salamanders from treatment plots. Foraging rates of ants, with a focus on Aphaenogaster, were monitored at treatment and control plots using direct observation/counts of ants visiting tuna bait stations.
Fall 2003 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2003 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002 and 2003 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2003 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2003 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea. This data set is based on GCE plant monitoring survey data set PLT-GCEM-0311a, and allometric relationships were based on GCE data set PLT-GCEM-0211b.
Fall 2004 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2004 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2004 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2004 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea. This data set is based on GCE plant monitoring survey data set PLT-GCEM-0501a, and allometric relationships were based on GCE data set PLT-GCEM-0211b.
Fall 2005 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2005 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2005 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2005 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea. This data set is based on GCE plant monitoring survey data set PLT-GCEM-0511a, and allometric relationships were based on GCE data set PLT-GCEM-0211b.
Fall 2006 plant monitoring survey -- shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
A quadrat survey was conducted in October 2006 to measure the species and size distribution of plants at 10 GCE LTER sampling sites. The quadrats were established as permanent plots at GCE sampling sites in October 2000 by placing wooden stakes at random locations across two nominal zones at each site, designated based on marsh structure (creekbank and high marsh). Several new plots were also added in October 2001, 2002, 2003 and 2004 to replace those lost due to catastrophic wrack disturbance or creek bank erosion. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in the data set. This survey will be repeated annually to assess changes in plant distribution and biomass in relation to environmental changes documented by other GCE LTER monitoring efforts.
Fall 2006 plant monitoring survey -- biomass calculated from shoot height and flowering status of plants in permanent plots at GCE sampling sites 1-10
The biomass of plants surveyed in permanent plots at 10 GCE LTER sampling sites in October 2006 was estimated based on allometric relationships between biomass and shoot height and flowering status derived for each site, zone, and species in October 2002. Biomass was only calculated for dominant species, including Spartina alterniflora, S. cynosuroides, Juncus roemerianus, and Zizaniopsis miliacea. This data set is based on GCE plant monitoring survey data set PLT-GCEM-0612a, and allometric relationships were based on GCE data set PLT-GCEM-0211b.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.