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FIGURE 1 in Names validly published in Kalanchoe (Crassulaceae subfam. Kalanchooideae) by Louis-René 'Edmond' Tulasne in 1857, with reference to names proposed in sched. by Hilsenberg and Bojer for two Malagasy species, and with notes on the type of the name K. tubiflora
FIGURE 1. Kalanchoe pinnata. In Tulasne (1857: 148) K. pinnata was included under the name Bryophyllum calycinum (see main text for a discussion). A. Leaf with plantlets developing along the margin. B. Inflorescence. Photographs: Gideon F. Smith.
InSAR-derived horizontal velocities in a global reference frame - final output dataset and software codes
<p>The output dataset as described in the article in title, extracted from COMET LiCSAR dataset in March 2021.</p> <p>We also provide a snapshot of the python3 codes used to generate the output dataset.</p> <p>Contents and description of the dataset:</p> <p>uaz_values.csv<br> ==============<br> Contains u_az values and other relevant data in columns:<br> frame - ID of related frame (same as in frame_values.csv)<br> esd_master - reference acquisition epoch<br> epoch - date of acquisition epoch<br> daz_total_wrt_orbits - original extracted azimuth shift w.r.t. orbits<br> daz_cc_wrt_orbits - original extracted azimuth shift w.r.t. orbits from intensity cross-correlation (prior to spectral diversity)<br> drg_wrt_orbits - original extracted range shift w.r.t. orbits<br> orbits_precision - precision of applied orbits (P..precise, R..restituted)<br> version - orbits version<br> daz_iono_grad_mm - u_az from ionosphere propagation<br> tecs_A - estimated TECs at centre of hyphotetical burst A<br> tecs_A - estimated TECs at centre of hyphotetical burst B<br> daz_mm_notide - u_az after correction of solid-earth tides<br> daz_mm_notide_noiono_grad - u_az after correction of solid-earth tides and ionospheric gradient propagation<br> is_outlier_* - flag of outlier datapoint, as identified through Huber loss function (related to velocity estimates in frame_values.csv)</p> <p>frame_values.csv<br> ================<br> Contains along-track velocity estimates and other relevant data in columns:<br> frame - ID of related frame<br> master - reference acquisition epoch<br> center_lon - longitude coordinate of the frame centre<br> center_lat - latitude coordinate of the frame centre<br> heading - satellite heading angle (from the geograpic north)<br> azimuth_resolution - extracted azimuth pixel spacing (in metres)<br> range_resolution - extracted range pixel spacing (in metres)<br> avg_incidence_angle - average incidence angle of the frame<br> centre_range_m - approximate slant distance between the satellite and centre of the frame<br> centre_time - acquisition time (UTC) of centre of the frame at the reference epoch (appliable to other epochs)<br> s1AorB - flag of S-1A or B of the reference epoch<br> slope_plates_vel_azi_itrf2014 - along-track velocity estimated from ITRF2014 plate motion model<br> slope_daz_mm_mmyear - estimated along-track velocity from the original u_az values (in mm/year)<br> slope_daz_mm_notide_mmyear - estimated along-track velocity from u_az values after correction on solid-earth tides<br> slope_daz_mm_notide_noiono_grad_mmyear - estimated along-track velocity from u_az values after correction on solid-earth tides and ionosphere<br> intercept_* - corresponding intercept (in mm)<br> *_RMSE_selection - RMSE of outlier-free u_az data samples<br> *_count_selection - count of outlier-free u_az data samples used to estimate corresponding velocity<br> *_RMSE_mmy_full - RMSE from all u_az data samples applying corresponding velocity and intercept (in mm/year)</p> <p><br> decomposed_grid.csv<br> ===================<br> Contains decomposed velocities (in 250x250 km spacing grid) and other relevant data in columns:<br> count - count of frames used for the decomposition<br> opass - orbital pass codes of the input frames (D..descending, A..ascending)<br> centroid_lon - longitude coordinate of the grid cell centre<br> centroid_lat - latitude coordinate of the grid cell centre<br> VEL_N_noTI - northward velocity component from data corrected for solid-earth tides and ionosphere<br> VEL_E_noTI - eastward velocity component from data corrected for solid-earth tides and ionosphere<br> VEL_N_noT - northward velocity component from data corrected for solid-earth tides<br> VEL_E_noT - eastward velocity component from data corrected for solid-earth tides<br> ITRF_N - northward velocity component from averaged ITRF2014 plate motion model<br> ITRF_E - eastward velocity component from averaged ITRF2014 plate motion model<br> *RMSE_* - RMSE of corresponding data</p>
FIGURES 66–71 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 66–71. Oricymba fanjingensis sp. nov., SEM internal view. 66, 67. Two complete valves. 68. Middle part from Fig. 66, note two slit-like openings of stigma (two arrows) and the central raphe endings invisible because obscured by flap over central nodule (wavy arrow). 69, 70. Apical details from Fig. 66, note the areola internal openings occluded by dentate projections and the marginal ridges (four arrows). 71. Detail from Fig. 70, note the internal apertures of each pervalvar row of foramina. Scale bars = 5 μm (Figs 66–67), 1 μm (Figs 68–71).
FIGURES 54–59 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 54–59. Oricymba fanjingensis sp. nov., SEM external view. 54. A complete valve, note two marginal ridges (four arrows) and two valve surface ridges (four wavy arrows). 55–57. Details from Fig. 54, note the marginal ridges (arrows), valve surface ridges (wavy arrows), and a groove between the marginal ridge and its adjacent surface ridge (double-headed arrows). 58, 59. Apical details from Fig. 54, note a notch on the dorsal side of distal raphe fissure (two arrows), the differentiated apical pore field clearly separated from the areolae. Scale bars = 5 μm (Figs 54, 56–57), 1 μm (Figs 55, 58–59).
FIGURES 40–53 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 40–53. Oricymba fanjingensis sp. nov., LM. 40–53. 14 valves showing a size diminution series, note the apiculate valve apices. Fig. 40. Illustration of holotype specimen. Scale bar = 10 μm (in Fig. 1).
FIGURES 28–33 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 28–33. Oricymba sinensis sp. nov., SEM external view. 28. A tilted frustule, note the marginal ridge on the ventral side of valve is inconspicuous (three black arrows). 29, 30, 32. Details from Fig. 28, note the marginal ridge on the ventral side of valve is very slightly raised (arrows). 31, 33. Apical details from Fig. 30 and Fig. 32 respectively, note the top foramina of apical pore field are elongate (arrows), which are different from the other rounded foramina. Scale bars = 5 μm (Fig. 28), 1 μm (Figs 29–33).
FIGURES 16–21 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 16–21. Oricymba sinensis sp. nov., SEM external view. 16. A tilted frustule, note a marginal ridge present on the dorsal side of valve (three black arrows). 17. Detail from Fig. 16, note the marginal ridge (two black arrows) and shallow depressions in the axial and central area (white arrows). 18, 20. Apical details from Fig. 16, note the marginal ridge (two black arrows), the valve face and the mantle almost met at a right angle, and the abvalvar part of mantle without ornaments (Fig. 20, double-headed arrow). 19, 21. Details from Fig. 18 and Fig. 19, respectively, note a notch on the dorsal side of distal raphe fissure (wavy arrows), the differentiated apical pore field clearly separated from the areolae (straight arrows), and the abvalvar part of mantle without ornaments (double-headed arrows). Scale bars = 5 μm (Fig. 16), 1 μm (Figs 17–21).
FIGURES 60–65 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 60–65. Oricymba fanjingensis sp. nov., SEM external view. 60–62. Three complete valves, note the marginal ridges and its adjacent surface ridges. 63–65. Details from Fig. 62, note a groove between two adjacent ridges (double-headed arrows). Scale bars = 5 μm (Figs 60–62), 1 μm (Figs 63–65).
FIGURES 1–15 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 1–15. Oricymba sinensis sp. nov., LM. Valves arranged in a size diminution series. Note the conspicuous dorsiventrality. Fig. 1 corresponds to the holotype specimen. Scale bar = 10 μm (in Fig. 1).
FIGURES 22–27 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 22–27. Oricymba sinensis sp. nov., SEM external view. 22. A slightly tilted frustule, note the lateral raphe. 23, 24, 26. Details from Fig. 22, note the areola openings curved or lunate adjacent to the axial area (arrows). 25, 27. Apical details from Fig. 24 and Fig. 26 respectively, note the top foramina of apical pore field are elongate (arrows), which are different from the other rounded foramina. Scale bars = 5 μm (Fig. 22), 1 μm (Figs 23–27).
FIGURES 34–39 in Two new species of Oricymba (Bacillariophyta) from China, described with reference to the structure of the apical pore field
FIGURES 34–39. Oricymba sinensis sp. nov., SEM internal view. 34. A complete valve, note the internal straight raphe fissure. 35. Middle part from Fig. 34, note two slit-like openings of stigma (two arrows) and the proximal raphe endings not visible as they are obscured by flap above central nodule (two wavy arrows). 36, 38. Apical details from Fig. 34, note the areola internal openings occluded by dentate projections. 37. Detail from Fig. 36, note the apical pore field clearly separated from the other parts of valve (two arrows). 39. Apical detail from another valve not included in this plate, note an undulate flap-like silica strip covering the internal apertures of each pervalvar row of foramina, not completely occluding internal apertures (two arrows). Scale bars = 5 μm (Fig. 34), 1 μm (Figs 35–39).
Reference data for Quartet DSeQC Report
<p>This Quartet quality control pipeline evaluate the performance of reads quality and variant calling quality. This pipeline accepts FASTQ format input files or VCF format input files. If the users input FASTQ files, this APP will output the results of pre-alignment quality control from FASTQ files, post-alignment quality control from BAM files and variant calling quality control from VCF files. <a href="https://gatk.broadinstitute.org/hc/en-us/articles/360035535932-Germline-short-variant-discovery-SNPs-Indels-">GATK best practice pipelines</a> (implemented by <a href="https://support.sentieon.com/manual/">SENTIEON software</a>) were used to map reads to the reference genome and call variants. If the users input VCF files, this APP will only output the results of variant calling quality control.</p> <p>More details on <a href="https://chinese-quartet.org">Quartet Data Portal</a> and <a href="https://docs.chinese-quartet.org/">QDP DocSite</a>.</p>
Data for: Higher abundance of adult pike in Baltic Sea coastal areas adjacent to restored wetlands compared to reference bays
<p><span>The abundance of pike, a keystone top-predator, has declined dramatically in the Baltic Sea since the 1990s likely owing to recruitment failure. It has been proposed that wetland restoration can aid the recovery of the pike stock by increasing the number of recruits produced by anadromous populations. Yet, no previous studies have addressed whether wetland restorations are associated with higher abundances of adult pike in the coastal habitat. To address this, we performed standardised rod-and-reel survey fishing in paired bays with and without wetlands across three coastal areas and three years. To estimate dispersal and the contribution of wetland pike to the coastal stock, we tagged captured pike with passive integrated responders (PIT) and employed PIT-reader stations in wetland inlets. The results showed that pike abundances were on average 90% higher in bays with an adjacent wetland although the effect varied among areas. Moreover, PIT-data uncovered that wetland pike constituted a high proportion of the pike found in adjacent coastal habitats and that some wetland fish dispersed up to 10 km. These results support that wetland restoration is a valuable tool to aid the coastal pike stock and ultimately restore the function and services of the coastal ecosystem.</span></p>
FIGURES 96–101 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 96–101. Surirella brebissonii var. kuetzingii, SEM, internal view. 96–98. Three complete valves. Note that the valve is composed of two portions: central and outside (labeled in Fig. 97). 99. Headpole from Fig. 96, note the continuous raphe at the apex (wavy arrow). 100. Footpole from Fig. 96, note the raphe interrupted at the apex (two arrows). 101. Detail of the valve margin from Fig. 96, note the slim and short fibulae and the occurrence of three portulae between two adjacent fibulae. Scale bars = 5 μm (Figs 96–98), 1 μm (Figs 99–101).
FIGURES 72–77 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 72–77. Surirella lacrimula, SEM, internal view. 72–74. Three complete valves, note the slim and short fibulae, some bifurcate (one arrow respectively), and the distinct central portion (indicated by a dotted line in Fig. 74). 75. Details on the middle section from Fig. 72. Note the presence of three portulae between two adjacent fibulae (three arrows) and multiseriate striae. 76. Headpole from Fig. 72, note the continuous raphe (wave arrow). 77. Footpole from Fig. 72, note the interrupted raphe endings (two arrows). Scale bars = 5 μm (Figs 72–74), 1 μm (Figs 75–77).
FIGURES 55–66 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 55–66. Surirella lacrimula, LM (1000×). 55–66. Twelve different valves showing the size diminution series. Note the ovate valve outline, the recognizable central and outside portions of the valve (labeled in Fig. 59), and the discernible costa-stria bundles (CBSs) within the outside portion. Scale bar = 10 μm (in Fig. 55).
FIGURES 49–54 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 49–54. Surirella minuta, SEM, internal view. 49, 50. Two complete valves, note the portulae are clearly visible. 51. Middle part of the valve, details from Fig. 49. Note that each fibula corresponds to a sinking in the mantle (three double-headed arrows). 52. Headpole from Fig. 49, note the continuing raphe (wavy arrow). 53. Footpole from Fig. 49, note the interrupted raphe endings (two arrows). 54. Middle part from Fig. 50, note only one portula between two adjacent fibulae (two arrows). Scale bars = 5 μm (Figs 49–50), 1 μm (Figs 51–54).
FIGURES 43–48 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 43–48. Surirella minuta, SEM, external view. 43, 44. Two valves showing the valve shape and the pattern of costa-stria bundles (CSB, labeled with white arrows in Fig. 43) alternated with over-fibula costae (OFC, labelled with black arrows in Fig. 43) from pole to pole. 45, 46. Details of the middle section of the valve (Fig. 45 from Fig. 43, Fig. 46 from Fig. 44), note the pattern of CSB alternated with OFC and multiseriate striae. 47, 48. Details of the apices from Fig. 43. Note the raphe endings interrupted at both the headpole (Fig. 47) and footpole (Fig. 48). Scale bars = 5 μm (Figs 43, 44), 1 μm (Figs 45–48).
FIGURES 21–26 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 21–26. Surirella liubingii sp. nov., SEM, internal view. 21–23. Three complete valves, note the robust fibulae and the internal wall of the raphe canal that distinctly grows into the cell cavity to the extent that the internal raphe canal wall develops to form a longitudinal siliceous plate (i.e., a "pseudoseptum") from the valve margin, indicated by two double-headed arrows in Fig. 21), which hides the portula structure. 24. Headpole from Fig. 21, note the continuous raphe. 25. Middle part, detail from Fig. 21, note the robust fibulae extending to the midline (two arrows) and multiseriate striae. 26. Footpole from Fig. 21, note interrupted raphe endings (two arrows) and striated raphe canal wall (two wavy arrows). Scale bars = 5 μm (Figs 21–23), 1 μm (Figs 24–26).
FIGURES 67–71 in Ultrastructure of four Surirella taxa (Bacillariophyceae) from Qinghai Province, northwest China, with reference to the characteristics of portulae
FIGURES 67–71. Surirella lacrimula, SEM, external view. 67.A complete valve showing the relatively flat valve surface and inconspicuous costa-stria bundles (CSBs). 68, 69. Details of the apices, from Fig. 67. 70, 71. Details of the middle section of the valve, from Fig. 67. Note that over-fibula costae (OFCs) are difficult to distinguish. Scale bars = 5 μm (Fig. 67), 1 μm (Figs 68–71).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.