Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
5,864
datasets available to search
ShareScore release 0.7.1
Dataset results
5,864 results for “species diversity”
Figure 11 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 11. Phylogenetic relationships of West Indian oryzomyines. Consensus cladogram of four most-parsimonious trees (tree length, L = 1245; consistency index, CI = 0.37; retention index, RI = 0.64) of combined molecular (Irbp) and morphological characters. Jackknife (> 50%) and Bremer (> 1) nodal support indices are shown above and below branches, respectively. Clades A, B, C, and D are the same as those recovered by Weksler (2006). Out-groups include Peromyscus maniculatus (Neotominae), Nyctomys sumichrasti (Tylomyinae), and Delomys sublineatus, Thomasomys baeops, and Wiedomys pyrrhorhinos (Sigmodontinae). Oryzomyine generic taxonomy follows that of Weksler et al. (2006).
Figure 8 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 8. Dorsal, lateral, and ventral views of Oligoryzomys victus skin (NHM 97.12.26.1). Scale bar: 2 cm.
Figure 5 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 5. Cranium and mandible of Megalomys. Left to right: Megalomys desmarestii (NHM 50.11.30.6) and Megalomys luciae (NHM 53.12.16.2). Scale bar: 1 cm.
Figure 7 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 7. Mandibular molars of West Indian rice rats. A, Megalomys desmarestii (NHM 55.12.24.201). B, Megalomys audreyae (NHM M7406a) (reversed for comparison). C, Oligoryzomys victus (NHM 97.12.26.1). Scale bars: 1 mm.
Figure 2 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 2. Martinique giant rice rat ('Le rat pilori, Mus pilorides'), possibly drawn from life, from Gervais (1854: 411).
Figure 6 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 6. Maxillary molars of West Indian rice rats. A, Megalomys desmarestii (NHM 55.12.24.201). B, Megalomys luciae (NHM 53.12.16.2). C, Oligoryzomys victus (NHM 97.12.26.1). Scale bar: 1 mm.
Figure 1 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 1. Map of the Windward and Leeward Islands of the Lesser Antilles, showing the distribution of extinct rice rats in Holocene archaeological sites (black stars) and Late Quaternary palaeontological sites (open circles), and islands from which rice rat species have been formally described. The modern-day sea level and 200 m isobath are both indicated, to show locations of shallow submarine banks that would have been exposed above water during Late Quaternary low sea-level stands, and which may have shared conspecific rice rat populations. Data from Pregill et al. (1994), Crock (2000), Newsom & Wing (2004), and LeFebvre (2007).
Figure 3 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species
Figure 3. Dorsal, lateral, and ventral views of Megalomys skins. Top, Megalomys desmarestii (NHM 55.12.24.201); bottom, Megalomys luciae (NHM 53.12.16.2). Scale bar: 5 cm.
Microbiome diversity and reproductive incompatibility induced by the prevalent endosymbiont Arsenophonus in two species of African cassava Bemisia tabaci whiteflies
<p>This dataset contains data from two-part experiments described in the paper: "El Hamss, H., Ghosh, S., M. N., M., Delatte, H., & Colvin, J. (2021). Microbiome diversity and reproductive incompatibility induced by the prevalent endosymbiont Arsenophonus in two species of African cassava Bemisia tabaci whiteflies. Ecology and Evolution, 00, 1–10. https://doi.org/10.1002/ece3.840".</p> <p>The experiment investigates the effects of <em>Arsenophonus</em> on whitefly reproduction and microbiome diversity.</p> <p>In the first experiment ("crossing experiment"), the effect of <em>Arsenophonus </em>is studied on number of eggs, nymphs, males, and females on different whitefly species at intraspecies level (SSA1-SG3A+ with SSA1-SG3A-) and at interspecies level (SSA2A+ with SSA1-SG3A- and SSA1-SG3A+). <em>Arsenophonus </em>infection A+ means the presence of <em>Arsenophonus </em>in related whitefly colony, A- means the absence of <em>Arsenophonus</em>.</p> <p>In the second experiment ("microbiome diversity"), whitefly colonies of crossed parents and generated progenies were sequenced to check <i>Arsenophonus</i> threshold (number of reads) and the presence of other bacteria in those crossed whiteflies.</p> <p>The main results of this work are:</p> <p>(i) Arsenophonus did not induce reproductive incompatibility within SSA1-SG3 but reduced the number of eggs, nymphs and female ratios,</p> <p>(ii) complete RI was observed between SSA1-SG3 and SSA2 indicating the lack of gene flow between the two whitefly species,</p> <p>(iii) many new 'other bacteria' in SSA <em>B. tabaci</em> have been identified, whose role remains to be investigated.</p>
Figure 4 in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 4. Percentage of pairwise comparisons within each class of genetic distances (p-distance) for Hermeuptychia sequences calculated between (black bars) and within (grey bars) species. Species delimitation was based on the recursive partitioning ABGD analysis.
Figure 3. A in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 3. A, relationships from our phylogenetic analyses based on Bayesian inference. Support values> 50 are indicated with posterior probability values indicated above the branch and bootstrap values indicated below the branch. Names and morphology group symbols are as presented in Seraphim et al. (2014), 'ns' indicates new sequences, and numbers in parentheses indicate the number of species within clades as indicated by the ABGD (recursive partitioning) approach. B, relationships among Hermeuptychia species redrawn from the phylogeny presented in Seraphim et al. (2014), for comparison.
Figure 2 in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 2. Bayesian inference (BEAST2) tree for Hermeuptychia COI barcode sequences with posterior probabilities (top)> 0.5 and bootstrap values (bottom)> 50 indicated. Sequences generated in this study have voucher numbers beginning 'LEP' or 'IN' and are highlighted in blue. Species boundaries as indicated by the three most plausible implementations of each approach, bPTP (ML) (black), ABGD (recursive partitioning) (green) and GMYC (multiple thresholds) (grey), are illustrated as coloured bars on the side. * indicates groups that were recovered as one putative species but appear separated owing to the underlying phylogeny. Red vertical bars denote putative species that do not include an previously published sequences. Horizontal coloured bars and symbols beside sample voucher names denote morphology groupings identified in Seraphim et al. (2014).
Figure 25 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 25. Geographic distribution of the Oedicerina species. A, world distribution of all known species. B, the CCZ with the sampling stations shown where O. henrici sp. nov. and O. teresae sp. nov. were collected. C, KKT area with the sampling stations shown where O. lesci sp. nov. and O. claudei sp. nov. were collected. Station codes as in Table 1.
Figure 24. A in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 24. A, neighbour-joining tree of the COI sequences of the four newly described species and O. ingolfi collected in the North Atlantic. Codes represent the Barcode Index Numbers (BINs) ascribed by the Barcode of Life Data System (BOLD). The distances were calculated using the P-distance method. Triangles indicate the relative number of individuals studied (height) and sequence divergence (width). The numbers in front of the nodes indicate bootstrap support (1000 replicates, only values higher than 50% are presented). Note that this tree does not represent a reconstruction of evolutionary history of the presented taxa. B, median joining network of the identified haplotypes. Each line represents a mutation between sequences. Colours denote sampling stations.
Figure 21 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 21. Oedicerina claudei sp. nov. Holotype juvenile (SMF-56781, 1-9S_Oedi_2015_1): Mxp, maxilliped; rG1, right gnathopod 1; rG2, right gnathopod 2. Scale bar = 0.1 mm, not all setae shown for clarity.
Figure 19 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 19. Oedicerina claudei sp. nov. Holotype juvenile (SMF-56781, 1-9S_Oedi_2015_1). A, habitus, arrow indicates close up of the rostrum. B, pleon and urosome. C, c1-4, right coxae 1–4. Scale bar A, B = 1 mm, C = 0.1 mm. The dashed line (long dashes) indicates the place where the appendage was damaged.
Figure 18 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 18. Oedicerina lesci sp. nov. Holotype female (SMF-56780, 10-7S_Oedi_2015_1): rpl2, right pleopod 2; lU1–U3, left uropod 1–3, respectively; T, telson. Scale bar = 0.1 mm, not all setae shown for clarity.
Figure 17 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 17. Oedicerina lesci sp. nov. Holotype female (SMF-56780, 10-7S_Oedi_2015_1): lP5–lP7, left pereopod 5–7, respectively. Scale bar = 0.1 mm, not all setae shown for clarity. The dashed line (long dashes) indicates place where the appendage was damaged.
Figure 16 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 16. Oedicerina lesci sp. nov. Holotype female (SMF-56780, 10-7S_Oedi_2015_1): lP3, left pereopod 3; lP4, left pereopod 4. Scale bar = 0.1 mm, not all setae shown for clarity. The dashed line (long dashes) indicates the place where the appendage was damaged.
Figure 23 in Exploring the diversity of the deep sea-four new species of the amphipod genus Oedicerina described using morphological and molecular methods
Figure 23. Oedicerina claudei sp. nov. Holotype juvenile (SMF-56781, 1-9S_Oedi_2015_1): rpl2, right pleopod 2; lU1, left uropod 1; rU2, right uropod 2; lU3, left uropod 3; T, telson. Scale bar = 0.1 mm. The dashed line (long dashes) indicates the place where the appendage was damaged.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.