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4,753 results for “SHAPE”

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dryad32/100

Data from: Drift, not selection, shapes toll-like receptor variation among oceanic island populations

Understanding the relative role of different evolutionary forces in shaping the level and distribution of functional genetic diversity among natural populations is a key issue in evolutionary and conservation biology. To do so accurately genetic data must be analyzed in conjunction with an unambiguous understanding of the historical processes that have acted upon the populations. Here we focused on diversity at toll-like receptor (TLR) loci, which play a key role in the vertebrate innate immune system and, therefore, are expected to be under pathogen-mediated selection. We assessed TLR variation within and among 13 island populations (grouped into three archipelagos) of Berthelot's pipit, Anthus berthelotii, for which detailed population history has previously been ascertained. We also compared the variation observed with that found in its widespread sister species, the tawny pipit, Anthus campestris. We found strong evidence for positive selection at specific codons in TLR1LA, TLR3 and TLR4. Despite this, we found that at the allele frequency level, demographic history has played the major role in shaping patterns of TLR variation in Berthelot's pipit. Levels of diversity and differentiation within and across archipelagos at all TLR loci corresponded very closely with neutral microsatellite variation, and with the severity of the bottlenecks that occurred during colonization. Our study shows that despite the importance of TLRs in combating pathogens, demography can be the main driver of immune gene variation within and across populations, resulting in patterns of functional variation that can persist over evolutionary timescales.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Shaping medicinal product information – a before and after study exploring physicians' perspectives on the summary of product characteristics

Objective: To establish, in the context of the revised European Pharmacovigilance Directive and based on physicians´ perspectives, how Summaries of Product Characteristics (SmPCs) could be more user-friendly and better support physicians´ interactions with patients, thereby improving patients'own understanding of their medicines. Design: Qualitative focus group discussions (step 1), development of an alternative SmPC (step 2) and an online quantitative survey (step 3) comparing the alternative SmPC to the currently approved version. Setting: Office-based physicians (n=218) from all federal states of Germany. Participants: 218 German physicians participated, with an equal representation of office-based general practitioners and specialists. For step 1 (n=18), physicians were recruited who frequently consulted SmPCs. Outcome measures: Physicians confirmed the importance of SmPCs as a comprehensive source of medicinal product information, but were moderately satisfied with the current SmPCs, utilised it infrequently and were more likely to engage additional sources of information. The alternative SmPC was consistently preferred. It differed in the way information for particular patient groups was presented, included additional sections (synopsis, checklist for patient information) and used a tabular format. Physicians indicated that SmPCs should be available with search and hyperlink functions, as well as be automatically updated and integrated in available practice software or similar solutions. Conclusions: This research contributes to the development of an official, reliable medicinal product information system meeting the needs of a modern information society while providing the reliability of an officially authorised source. In the context of health literacy, SmPCs should be established as the primary information source for health care professionals to ensure compliant and safe utilisation of medicinal products.

opencc-zeroAug 2013View details →
dryad32/100

Data from: Population genetic structure of the giant cactus Echinopsis terscheckii in northwestern Argentina is shaped by patterns of vegetation cover

Species inhabiting drylands commonly depend on the surrounding vegetation for recruitment under stress, while competition may affect populations in moister environments. Our objective was to analyze how different climates and vegetation affect the fine-scale spatial genetic structure (SGS) of the columnar cactus Echinopsis terscheckii. At four sites we estimated vegetation cover by digitized patches and the normalized difference vegetation index (NDVI). We mapped 30 individuals per population and collected tissue for isozyme electrophoresis using 15 putative loci. Spatial autocorrelation between all possible genotype pairs and the number of genetically homogeneous groups and families were calculated for each population. Greater cover (66%) and average NDVI values were detected in the most humid habitat that consisted of fewer, larger, and more dispersed vegetation patches. All populations were genetically diverse and showed significant SGS. Positive correlations were found between the distance at which maximum autocorrelation and kinship values were reached and vegetation area and patch size. Also higher NDVI values were associated with lower number of patches. Populations exposed to higher precipitation and vegetation cover consisted of sparse individuals that clustered at larger distances whereas vegetation patches in arid climates produced groups of closely related genotypes at small distances. These results support the stress-gradient genetic hypothesis. Under water stress, facilitation promotes establishment underneath patchy vegetation resulting in fine-scale family structure. In moister xerophilous forests competition for resources, i.e. light, results in sparse individuals and thus coarse-scale neighborhoods. This information can guide conservation and/or restoration efforts, such as the spatial scale to be considered in germplasm collection.

opencc-zeroDec 2016View details →
dryad32/100

Predator defense is shaped by risk, brood value and social group benefits in a cooperative breeder

<p><span>Predation is a major cause of mortality and nest failure in birds. Cooperative predator defense can enhance nest success and adult survival, but since it is inherently risky, dynamic risk assessment theory predicts that individuals modify defense behavior according to risk posed by the predator. Parental investment theory on the other hand predicts that reproductive payoffs (brood value) determine investment in nest defense. We propose that in cooperative breeders, fitness benefits deriving from survival of other group members may additionally influence defense behavior (social group benefits theory). We tested predictions of these theories in the cooperatively breeding purple-crowned fairy-wren, <i>Malurus coronatus</i>, where brood value is higher for breeders, but social group benefits more important for helpers. We recorded experimentally-induced individual defense behaviors in response to predator models presented near nests, representing differing levels of threat to nests and adults. As predicted, (i) individuals engaged in less risky defenses when encountering a more dangerous predator (dynamic risk assessment theory); (ii) individuals defended older broods more often, and breeders defended more than helpers (parental investment theory); and (iii) helpers were more likely to respond to a predator of adults (social group benefits theory). Our findings highlight that predator defense in cooperative breeders is complex, shaped by the combination of immediate risk and multiple benefits.</span></p>

opencc-zeroDec 2019View details →
dryad32/100

Data from: How predation shaped fish: the impact of fin spines on body form evolution across teleosts

It is well known that predators can induce morphological changes in some fish: individuals exposed to predation cues increase body depth and the length of spines. We hypothesize that these structures may evolve synergistically, as together, these traits will further enlarge the body dimensions of the fish that gape-limited predators must overcome. We therefore expect that the orientation of the spines will predict which body dimension increases in the presence of predators. Using phylogenetic comparative methods, we tested this prediction on the macroevolutionary scale across 347 teleost families, which display considerable variation in fin spines, body depth and width. Consistent with our predictions, we demonstrate that fin spines on the vertical plane (dorsal and anal fins) are associated with a deeper-bodied optimum. Lineages with spines on the horizontal plane (pectoral fins) are associated with a wider-bodied optimum. Optimal body dimensions across lineages without spines paralleling the body dimension match the allometric expectation. Additionally, lineages with longer spines have deeper and wider body dimensions. This evolutionary relationship between fin spines and body dimensions across teleosts reveals functional synergy between these two traits and a potential macroevolutionary signature of predation on the evolutionary dynamics of body shape.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Nest architecture shapes the collective behavior of harvester ants

Structures influence how individuals interact and, therefore, shape the collective behaviours that emerge from these interactions. Here I show that the structure of a nest influences the collective behaviour of harvester ant colonies. Using network analysis, I quantify nest architecture and find that as chamber connectivity and redundancy of connections among chambers increase, so does a colony's speed of recruitment to food. Interestingly, the volume of the chambers did not influence speed of recruitment, suggesting that the spatial organization of a nest has a greater impact on collective behaviour than the number of workers it can hold. Thus, by changing spatial constraints on social interactions organisms can modify their behaviour and impact their fitness.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Landscape genomics of Populus trichocarpa: the role of hybridization, limited gene flow and natural selection in shaping patterns of population structure

Populus trichocarpa is an ecologically important tree across western North America. We used a large population sample of 498 accessions over a wide geographical area genotyped with a 34K Populus SNP array to quantify geographical patterns of genetic variation in this species (landscape genomics). We present evidence that three processes contribute to the observed patterns: (1) introgression from the sister species P. balsamifera (2) isolation-by-distance and (3) natural selection. Introgression was detected only at the margins of the species' distribution. Isolation-by-distance was significant across the sampled area as a whole, but no evidence of restricted gene flow was detected in a core of drainages from southern British Columbia. We identified a large number of FST outliers. GO analyses revealed that FST outliers are overrepresented in genes involved in circadian rhythm and response to red/far-red light when the entire dataset is considered, while in southern British Columbia heat response genes are overrepresented. We also identified strong correlations between geoclimate variables and allele frequencies at FST outlier loci that provide clues regarding the selective pressures acting at these loci.

opencc-zeroDec 2013View details →
dryad32/100

From individuals to populations: How intraspecific competition shapes thermal reaction norms

1. Most ectotherms follow the temperature-size rule (TSR): in cold environments individuals grow slowly but reach a large asymptotic length. Intraspecific competition can induce plastic changes of growth rate and asymptotic length and competition may itself be modulated by temperature. 2. Our aim is to disentangle the joint effects of temperature and intraspecific competition on growth rate and asymptotic length. 3. We used two distinct clonal lineages of the Collembola Folsomia candida, to describe thermal reaction norms of growth rate, asymptotic length and reproduction over 6 temperatures between 6°C and 29°C. In parallel, we measured the long-term size-structure and dynamics of populations reared under the same temperatures to measure growth rates and asymptotic lengths in populations and to quantify the joint effects of competition and temperature on these traits. 4. We show that intraspecific competition modulates the temperature-size rule. In dense populations there is a direct negative effect of temperature on asymptotic length, but there is no temperature dependence of the growth rate, the dominant factor regulating growth being competition. The two lineages responded differently to the joint effects of temperature and competition on growth and asymptotic size and these genetic differences have marked effects on population structure along our temperature gradient. 5. Our results reinforce the idea that the TSR response of ectotherms can be modulated by biotic and abiotic stressors when studied in non-optimal laboratory experiments. Untangling complex interactions between environment and demography will help to understand how size will respond to environmental change and how climate change may influence population size structure.

opencc-zeroDec 2019View details →
dryad32/100

Data from: Interactions among herbivory, climate, topography, and plant age shape riparian willow dynamics in northern Yellowstone National Park, USA

Understanding how the environmental context modifies the strength of trophic interactions within food webs forms a central challenge in community ecology. Here, we demonstrate the necessity of considering the influence of climate, landscape heterogeneity and demographics for understanding trophic interactions in a well-studied food web in Yellowstone National Park, USA. We studied riparian willow (Salix spp.) establishment and stem growth reconstructed from tree rings on the northern range of Yellowstone over a 30-year period that included the reintroduction of a top-predator, the gray wolf (Canis lupus). We used climate variables (annual precipitation, stream flow, and growing season length), herbivore abundance, and landscape descriptors (elevation and topographic wetness index) to predict establishment and growth processes through time before and after the introduction of wolves. We fitted Bayesian hierarchical models to establishment data and time series of individual stem heights from 1980 to 2008. Explaining variability in establishment required models with stream flow, annual precipitation, and elk abundance. Climate, trophic, and landscape covariates interacted with stem age to determine stem height and growth rate through time. Growth rates of most stems ages (2+) declined after the reintroduction of wolves. However, stem growth rates naturally declined with age, and the decline we observed was coincident with faster growth rates for the youngest stems. Mean stem heights at age have remained relatively stable through time for most age classes. Estimated effects of landscape topography had approximately the same magnitude of effect on stem growth rate at age as elk abundance. Synthesis: We show that the effects of modification of a food web cannot be predicted by studying trophic dynamics in isolation. No single driver explained patterns of willow establishment and growth over the past three decades in Yellowstone. Instead, interactions among trophic forces, interannual climate variability and landscape topography together shaped how the ecosystem responded to perturbations. Top-down effects of ungulates on riparian woody vegetation must be considered in the context of plant age, and climate and landscape heterogeneity.

opencc-zeroDec 2013View details →
dryad32/100

Data from: The interplay of dispersal limitation, rivers, and historical events shapes the genetic structure of an Amazonian frog

Disentangling the impact of landscape features such as rivers and historical events on dispersal is a challenging but necessary task to gain a comprehensive picture of the evolution of diverse biota such as that found in Amazonia. Adenomera andreae, a small, territorial, terrestrial frog species of the Amazonian forest represents a good model for such studies. We combined Cytochrome b sequences with 12 microsatellites to investigate the genetic structure at two contrasted spatial scales in French Guiana: along a ~6 km transect to evaluate dispersal ability and between paired bank populations along a ~65 km stretch of the Approuague river to test the effect of rivers as barriers to dispersal. We observed significant spatial genetic structure between individuals at a remarkably small geographical scale and conclude that the species has a restricted dispersal ability likely tied to its life history traits. Mitochondrial and microsatellite data also indicate a high level of differentiation among populations on opposite banks of the river and, in some cases, among populations on the same riverbank. These results suggest that the observed population structure in A. andreae is due to restricted dispersal abilities combined with the action of rivers and Quaternary population isolation. Given that Amazonia hosts a great portion of anurans, as well as other small vertebrates, that display life history traits comparable to Adenomera andreae, we argue that our analyses provide new insights into the complex interactions among evolutionary processes shaping Amazonian biodiversity.

opencc-zeroDec 2011View details →
dryad32/100

Data from: Rodent-avoidance, topography and forest structure shape territory selection of a forest bird

Background - Understanding the factors underlying habitat selection is important in ecological and evolutionary contexts, and crucial for developing targeted conservation action in threatened species. However, the key factors associated to habitat selection often remain poorly known. We evaluated hypotheses related to abiotic and biotic factors thought to affect territory selection of the wood warbler Phylloscopus sibilatrix, a passerine living in an unpredictable environment owing to irregular rodent outbreaks and showing long-term declines particularly in Western Europe. Results - Comparing breeding territories to unoccupied areas located close-by revealed that territory occupancy in north-western Switzerland was positively related to slope steepness (topographic hypothesis supported) as well as to numbers of tussocks and trees, respectively, while it showed a unimodal relationship to cover of herb layer (forest structure hypothesis supported). Furthermore, a strong negative correlation between breeding territory occupancy and rodent numbers was found, suggesting that wood warblers avoid areas with high rodent densities (rodent-avoidance hypothesis supported). Comparing breeding territories to abandoned territories showed that breeding territories were located on steeper slopes (topography hypothesis supported), at larger distance from the forest edge (anthropogenic disturbance hypothesis supported) and harboured more trees (forest structure hypothesis supported) than abandoned territories. Conclusions - Aside from structural and topographic features of the habitat, wood warblers are affected by rodent numbers when settling, making habitat selection unpredictable from year to year. Forestry practices promoting relatively high tree densities, few bushes and an intermediate low-growing ground vegetation cover would enhance habitat quality for this declining passerine. In contrast, forestry practices aiming at increasing light in forests (selective thinning, group-felling) or keeping forest stands permanently covered with shrubs, bushes and trees of various sizes (continuous cover forestry) do not benefit the wood warbler.

opencc-zeroDec 2015View details →
dryad32/100

Data from: Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor

PREMISE OF THE STUDY: Hybridization between diploids and tetraploids can lead to new allopolyploid species, often via a triploid intermediate. Viable triploids are often produced asymmetrically, with greater success observed for "maternal-excess" crosses where the mother has a higher ploidy than the father. Here we investigated the evolutionary origins of Mimulus peregrinus, an allohexaploid recently derived from the triploid M. ×robertsii, to determine whether reproductive asymmetry has shaped the formation of this new species. METHODS: We used reciprocal crosses between the diploid (M. guttatus) and tetraploid (M. luteus) progenitors to determine the viability of triploid M. ×robertsii hybrids resulting from paternal- vs. maternal-excess crosses. To investigate whether experimental results predict patterns seen in the field, we performed parentage analyses comparing natural populations of M. peregrinus to its diploid, tetraploid, and triploid progenitors. Organellar sequences obtained from pre-existing genomic data, supplemented with additional genotyping was used to establish the maternal ancestry of multiple M. peregrinus and M. ×robertsii populations. KEY RESULTS: We found strong evidence for asymmetric origins of M. peregrinus, but opposite to the common pattern, with paternal-excess crosses significantly more successful than maternal-excess crosses. These results successfully predicted hybrid formation in nature: 111 of 114 M. ×robertsii individuals, and 27 of 27 M. peregrinus, had an M. guttatus maternal haplotype. CONCLUSION: This study, which includes the first Mimulus chloroplast genome assembly, demonstrates the utility of parentage analysis through genome skimming. We highlight the benefits of complementing genomic analyses with experimental approaches to understand asymmetry in allopolyploid speciation.

opencc-zeroJun 2016View details →
dryad32/100

Early social deprivation shapes neuronal programming of the social decision-making network in a cooperatively breeding fish

The early social environment an animal experiences may have pervasive effects on its behaviour. The Social Decision-Making network (SDMN), consisting of interconnected brain nuclei from the forebrain and midbrain, is involved in the regulation of behaviours during social interactions. In species with advanced sociality such as cooperative breeders, offspring are exposed to a large number and a great diversity of social interactions every day of their early life, which may have life-long consequences on the development of several neurophysiological systems within the SDMN, although these effects are largely unknown. We studied these life-long effects in a cooperatively breeding fish, Neolamprologus pulcher, focusing on the expression in the SDMN of genes involved in the monoaminergic and stress response systems. N. pulcher fry were raised until an age of two months either with their parents, subordinate helpers and same clutch siblings (+F), or with same clutch siblings only (-F). Analysis of the expression of glucocorticoid receptor (GR), mineralcorticoid receptors (MR), corticotropin releasing factor (CRF), dopamine receptors 1 and 2, serotonin transporter (SERT) and DNA methyltransferase I (DNMT1) genes showed that early social experiences altered the neurogenomic state of the preoptic area (POA) of the hypothalamus. The dopamine receptor 1 gene was up-regulated in the POA of -F fish, compared to +F fish. -F fish also showed up-regulation of GR1 expression in the dorsal medial telencephalon (homologous to the basolateral amygdala). Our results suggest that early social environment has life-long effects on the development of several neurophysiological systems within the SDMN. --

opencc-zeroJun 2021View details →
dryad32/100

Data from: Plant functional traits and environmental conditions shape community assembly and ecosystem functioning during restoration

Recovering biological diversity and ecosystem functioning are primary objectives of ecological restoration, yet these outcomes are often unpredictable. Assessments based on functional traits may help with interpreting variability in both community composition and ecosystem functioning because of their mechanistic and generalizable nature. This promise remains poorly realized, however, because tests linking environmental conditions, functional traits, and ecosystem functioning in restoration are rare. Here, we provide such a test through what is to our knowledge the first empirical application of the 'response–effect trait framework' to restoration. This framework provides a trait-based bridge between community assembly and ecosystem functioning by describing how species respond to environmental conditions based on traits and how the traits of species affect ecosystem functioning. Our study took place across 29 prairies restored from former agricultural fields in southwestern Michigan. We considered how environmental conditions affect ecosystem functioning through and independently of measured functional traits. To do so, we paired field-collected trait data with data on plant community composition and measures of ecosystem functioning and used structural equation modelling to determine relationships between environmental conditions, community-weighted means of functional traits and ecosystem functioning. Environmental conditions were predictive of trait composition. Sites restored directly from tillage (as opposed to those allowed to fallow) supported taller species with larger seeds and higher specific leaf area (SLA). Site age and fire frequency were both negatively related to SLA. We also found a positive relationship between soil moisture and SLA. Both trait composition and environmental conditions predicted ecosystem functioning, but these relationships varied among the measured functions. Pollination mode (animal pollination) increased and fire frequency decreased floral resource availability, seed mass had a negative effect on below-ground biomass production, and vegetative height increased decomposition rate. Soil moisture and fire frequency both increased while site age decreased above-ground biomass production, and site age and soil moisture both increased decomposition rate. Synthesis and applications. Our results suggest that both trait composition and environmental conditions play a role in shaping ecosystem function during restoration, and the importance of each is dependent on the function of interest. Because of this, environmental heterogeneity will be necessary to promote multiple ecosystem functions across restored landscapes. A trait-based approach to restoration can aid interpretation of variable outcomes through insights into community assembly and ecosystem functioning.

opencc-zeroDec 2016View details →
dryad32/100

Raw data: Local habitat factors and spatial connectivity jointly shape an urban insect community

<p class="MsoNoSpacing">As the world becomes more and more urbanized, it is increasingly important to understand the impacts of urban landscapes on biodiversity. Urbanization can change local habitat factors and decrease connectivity among local habitats, with major impacts on the structure of natural food webs. However, most studies have focused on single species, or compared rural to urban habitats, which do not inform us on how to design and manage cities to optimize biodiversity. To understand the local and spatial drivers of ecological communities within urban landscapes, we assessed the relative impact of local habitat factors (sunlight exposure and leaf litter) and spatial connectivity on an oak-associated herbivore community within an urban landscape. From the local habitat factors, leaf litter but not sunlight exposure was related to herbivore species richness, with leaf litter contributing to the maintenance of high species richness on isolated trees. Guilds and species differed strongly in their response to local habitat factors and connectivity, resulting in predictable variation in insect community composition among urban oaks. <span>Taken together, our study shows an interactive effect of local and spatial factors on species richness and species composition within an urban context, with guild- and species-specific life histories determining the response of insects to urban landscapes. </span>To maintain biodiversity in the urban landscape, preserving a dense network of local habitats is essential. Moreover, allowing leaf litter to accumulate can be a simple, cost-effective conservation management practice.</p>

opencc-zeroJul 2021View details →
dryad32/100

Data from: Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Boreal forests and arctic tundra cover 33% of global land area and store an estimated 50% of total soil carbon. Because wildfire is a key driver of terrestrial carbon cycling, increasing fire activity in these ecosystems would likely have global implications. To anticipate potential spatiotemporal variability in fire-regime shifts, we modeled the spatially explicit 30-yr probability of fire occurrence as a function of climate and landscape features (i.e. vegetation and topography) across Alaska. Boosted regression tree (BRT) models captured the spatial distribution of fire across boreal forest and tundra ecoregions (AUC from 0.63–0.78 and Pearson correlations between predicted and observed data from 0.54–0.71), highlighting summer temperature and annual moisture availability as the most influential controls of historical fire regimes. Modeled fire–climate relationships revealed distinct thresholds to fire occurrence, with a nonlinear increase in the probability of fire above an average July temperature of 13.4°C and below an annual moisture availability (i.e. P-PET) of approximately 150 mm. To anticipate potential fire-regime responses to 21st-century climate change, we informed our BRTs with Coupled Model Intercomparison Project Phase 5 climate projections under the RCP 6.0 scenario. Based on these projected climatic changes alone (i.e. not accounting for potential changes in vegetation), our results suggest an increasing probability of wildfire in Alaskan boreal forest and tundra ecosystems, but of varying magnitude across space and throughout the 21st century. Regions with historically low flammability, including tundra and the forest–tundra boundary, are particularly vulnerable to climatically induced changes in fire activity, with up to a fourfold increase in the 30-yr probability of fire occurrence by 2100. Our results underscore the climatic potential for novel fire regimes to develop in these ecosystems, relative to the past 6000–35 000 yr, and spatial variability in the vulnerability of wildfire regimes and associated ecological processes to 21st-century climate change.

opencc-zeroDec 2015View details →
zenodo32/100

Impacts of City Shape on Rainfall in Contrasting Environments

<p>WRF-LES simulation of rainfall over inland and costal environment. Results here are under the quasi-equilibrium state.</p>

opencc-by-4.0Jul 2021View details →
zenodo32/100

Data for: A test of Sensory Drive in plant-pollinator interactions: habitat heterogeneity shapes pollinator preference for a floral visual signal

<p>DATA:</p> <p>FinnKoski_PollData_Final:&nbsp;Pollinator visitation data to floral arrays analyzed</p> <p>Spectra used for vismodels.zip:&nbsp;reflectance spectra of flowers and floral backgrounds, irradiance spectra</p> <p>ColorContrastData: visual contrast data analyzed</p> <p>CODE:&nbsp;</p> <p>vismod_code.R : code used for visual system modeling and calculation of contrast</p> <p>SAS_modelcode.R: SAS code used to analyze pollinator visitation data and color contrast data</p>

opencc-by-4.0Jul 2021View details →
zenodo32/100

The joint role of coevolutionary selection and network structure in shaping trait matching in mutualisms

<p>Data used in the &quot;The joint role of coevolutionary selection and network structure in shaping trait matching in mutualisms&quot;</p>

opencc-by-4.0Jul 2021View details →
zenodo32/100

Bright correlated twin-beam generation and radiation shaping in high-gain parametric down-conversion with anisotropy

<p>Dataset of the publication &ldquo;Bright correlated twin-beam generation and radiation shaping in high-gain parametric down-conversion with anisotropy&ldquo;, M. Riabinin, P. R. Sharapova, and T. Meier, Optics Express 29, 21876 (2021) ( <a href="https://doi.org/10.1364/OE.424977">https://doi.org/10.1364/OE.424977</a> ). The zip file includes the data on which the plots shown in figures 2, 3, 4, 6, 7, and 8 are based.</p>

opencc-by-4.0Jul 2021View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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