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Figure 7 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 7 Osmia adunca, two exemplary raw images of the front-light stack, with the focal plane going through the proximal (A) and the distal part (B) of the sample, the EDOF image (C), and a detail of the latter (D) demonstrate the resolution. Scale bars: 1 mm.
Figure 2 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 2 Illumination by two hemispherical white-coated domes (A–C). The back-light-dome can be removed for specimen mounting (D, E). No direct light from the LED-stripes hits the specimens (C, E).
Figure 17 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 17 Relation of surface area and volume for all insect species presented here. While the dipteran, hymenopteran and lepidopteran species had their wings unfolded, all beetles had the wings folded underneath their elytra. Models are not to scale.
Figure 3 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 3 The camera is mounted on a macro-rail (A). The camera position and orientation can be fine-tuned in all directions (B–D). The camera lens is covered by a pinhole-cap (B).
Figure 10 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 10 Comparison of dense-cloud-based mesh generation and visual consistency meshing of Thricops sp. (A EDOF image). Thin and delicate structure like wings and setae are not well modelled from the dense cloud (B) but well preserved by visual consistency meshing (C).
Figure 11 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 11 Comparison of mesh quality and number of polygons, exemplified by a model of the shell of Discus rotundatus. The model with 1 million faces (A) has a file size (3D-PDF) of 35 MB and shows more detail, but the reduced model with 75.000 faces (B) still well resembles the structure with a file size (3D-PDF) of only 3 MB.
Figure 9 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 9 Workflow of model generation of Pogonocherus hispidus with PhotoScan Pro. In total, 398 EDOF-images are taken with DISC3D (one example is shown in A). Using the image data, masks and camera positions estimated with the calibration sphere (see Fig. 6), a sparse cloud with optimized camera positions is generated (B). Two options for model generation are available: direct mesh calculation based on a dense point cloud (C) or meshing with visual consistency (D). Resulting meshes can be textured (E, F). Scale bar: 1mm.
Figure 12 from: Ströbel B, Schmelzle S, Blüthgen N, Heethoff M (2018) An automated device for the digitization and 3D modelling of insects, combining extended-depth-of-field and all-side multi-view imaging. ZooKeys 759: 1-27. https://doi.org/10.3897/zookeys.759.24584
Figure 12 Overview and size comparison of the specimens used in this study. Coleoptera: a Prosopocoilus savagei b Anoplotrupes stercorosus, *: specimen was broken during comparative measurements c Stenocorus meridianus d Typhaeus typhoeus e Rutpela maculata f Valgus hemipterus g Cryptocephalus sericeus h Pogonocherus hispidus i Phyllobius pyri j Tytthaspis sedecimpunctata; Lepidoptera: k Zygaena filipendulae; Hymenoptera: l Paraponera clavata m Osmia adunca n Sphecodes ephippius; Diptera: o Thricops sp., p Culex pipiens q Oscinella frit; Gastropoda: r Helicodonta obvoluta s Aegopinella nitens t Discus rotundatus.; Scale bar: 1 cm (keep in mind that not all specimens are equidistant to the lens; i.e., at the same height of the needle).
Figure 18 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 18 Hase talpamorphicus gen. et sp. n. Holotype (female) (M85/3, 1164): A Mx2 enp B Mxp CP1 DP2.
Figure 15 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 15 Hase talpamorphicus gen. et sp. n. Confocal laser scanning images. Holotype (female) (M85/3, 1164): A A1, ventral B A1, dorsal C A2 D ventral cephalothorax showing A2 and mouthparts.
Figure 3 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 3 Hase lagomorphicus gen. et sp. n. Holotype (female) (M48/1, 330, DIVA-I): A urosome, ventral B urosome, dorsal C genital double somite, ventral.
Figure 6 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 6 Hase lagomorphicus gen. et sp. n. Holotype (female) (M48/1, 330, DIVA-I): A Md gnathobasis; a1- mandibular palp with basis, exp and enp; a2- exp; a3- enp B Mx2 syncoxa, allobasis, and first enp without claw; b1 enp1 with claw and accessory spines, and 2nd enp (fused) in lateral view; b2 enp-1 with claw, and enp-2 to enp-5; b3 upper view of enp-1 to enp-5; b4 upper view of enp-2; b5-b7 upper view of enp-3 to enp-5 C Mx1 with unarmed coxa, basis, enp and exp; c1 and c2- coxa; c3 basis with incorporated enp; c4- exopod D Mxp.
Figure 12 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 12 Hase talpamorphicus gen. et sp. n. Confocal laser scanning images. Holotype (female) (M85/3, 1164): A habitus, dorsal B habitus, lateral C habitus, ventral.
Figure 10 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 10 Hase lagomorphicus gen. et sp. n. Holotype (female) (M48/1, 330, DIVA-I): A P3 B P4; b1- P4 enp. Paratype (Copepodite V) (M48/1, 330, DIVA-I) : a1- P3 enp-3; b2- P4 exp-3; b3- P4 enp-3.
Figure 20 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 20 Hase talpamorphicus gen. et sp. n. Confocal laser scanning images. Holotype (female) (M85/3, 1164): A P1 B P2 C P3 D P4.
Figure 17 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 17 Hase talpamorphicus gen. et sp. n. Confocal laser scanning images. Holotype (female) (M85/3, 1164): A Md, anterior B Mx1 C Mx2 D Mxp.
Figure 14 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 14 Hase talpamorphicus gen. et sp. n. Holotype (female) (M85/3, 1164): A antennule B A2 C A2 coxa and allobasis D furca, dorsal E furca, ventral.
Figure 11 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 11 Hase lagomorphicus gen. et sp. n. Confocal laser scanning images. Holotype (female) (M48/1, 330, DIVA-I): A P1 C P3. Paratype (female) (M63/2, 105, Diva II) B P2.
Figure 2 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 2 Hase lagomorphicus gen. et sp. n. Confocal laser scanning images. Holotype (female) (M48/1, 330, DIVA-I): A habitus, dorsal B habitus, lateral C habitus, ventral.
Figure 16 from: Corgosinho PHC, Kihara TC, Schizas NV, Ostmann A, Arbizu PM, Ivanenko VN (2018) Traditional and confocal descriptions of a new genus and two new species of deep water Cerviniinae Sars, 1903 from the Southern Atlantic and the Norwegian Sea: with a discussion on the use of digital media in taxonomy (Copepoda, Harpacticoida, Aegisthidae). ZooKeys 766: 1-38. https://doi.org/10.3897/zookeys.766.23899
Figure 16 Hase talpamorphicus gen. et sp. n. Holotype (female) (M85/3, 1164): A mandible B Mx1 C Mx1 praecoxal arthrite D Mx2.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.