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8,537 results for “Openness”
FIGURE 4 in A new species of Ischnocnema (Anura: Eleutherodactylinae) from open areas of the Cerrado Biome in southeastern Brazil
FIGURE 4. Two closely related Ischnocnema species in life. Above Ischnocnema penaxavantinho sp. n. (topotype) (AAG-UFU 4124). Below Ischnocnema juipoca from Poços de Caldas, MG (AAG-UFU 4132).
FIGURE 1 in A new species of Ischnocnema (Anura: Eleutherodactylinae) from open areas of the Cerrado Biome in southeastern Brazil
FIGURE 1. Ischnocnema penaxavantinho sp. n.. Male AAG-UFU 4124, topotype. A—Dorsal and B—Lateral views of head. C—Palm of left hand and D—Plant of left foot.
FIGURE 3 in A new species of Ischnocnema (Anura: Eleutherodactylinae) from open areas of the Cerrado Biome in southeastern Brazil
FIGURE 3. Two closely related species of Ischnocnema. Above Ischnocnema juipoca (Atibaia, SP). A—Female (AAG- UFU 4203), B—Male (AAG-UFU 4202). Below Ischnocnema penaxavantinho sp. n. (paratopotypes). C—Female (ZUEC 13647), D—Male (AAG-UFU 4122). All specimens are adults. Note smaller size and the darker grey coloration of I. penaxavantinho sp. n..
FIGURE 44. Stenogephyra spp. distribution. Open circle, S in Revision of the genus Stenogephyra Lyneborg (Diptera: Therevidae: Phycinae)
FIGURE 44. Stenogephyra spp. distribution. Open circle, S. dianeae spec. nov.; open square, S. janiceae spec. nov.; closed triangle, S. parkeri spec. nov.; closed circle, S. schlingeri spec. nov. FIGURE 45. Stenogephyra spp. distribution. Closed triangle, S. minuta; closed circle, S. namibiensis spec. nov.; open circle, S. torrida.
FIGURE 9. Molgula herdmanina nom. nov. A, specimen opened along the endostyle B in Pedunculate Molgula species (Ascidiidae, Molgulidae) from the French Antarctic sector. Redescription and taxonomic revision
FIGURE 9. Molgula herdmanina nom. nov. A, specimen opened along the endostyle B, dissection with the branchial sac removed.
Data supporting Open Access Game
<p>This dataset provides the necessary files to reproduce the "Jeu de l'OA", a goose game designed to help showcasing open access and topics related to open science (data preservation and dissemination; copyright issues...) to Phd students and researchers.</p> <p>The game is composed of :</p> <ul> <li>a board in 3 parts (3 levels)</li> <li>2 kind of cards</li> <li>a spreadsheet allows to add/delete/change both questions and answers which will be printed on the cards</li> </ul> <p>Several ReadMe files come with the dataset to describe how to reproduce the cards and the board, and to explain the rules of the game.</p>
Open Source Beehives Project - Audio Database as of 2-21-17
<p>The folder structure contains data for different beehive states in the first level.</p> <p>In the second level, data is divided by location.</p> <p>-Bee species will be added in the future-</p>
Fig. 23. Metapleural gland opening, left lateral view. A. Aneuretus simoni. B. Myrmica americana. C in A phylogenetic analyis of ant morphology (Hymenoptera: Formicidae) with special reference to the poneromoprh subfamilies
Fig. 23. Metapleural gland opening, left lateral view. A. Aneuretus simoni. B. Myrmica americana. C. Prionopelta antillana. Abbreviations: a, ventral flap projection; Pl3, metapleuron; Pl3G, metapleural gland opening; IT, propodeum; IIT, tergum of petiole.
Philippines - Open, validated health, climate, environment and socioeconomic data
<p>The <strong>Project Climate Change, Health, and Artificial Intelligence (Project CCHAIN)</strong> dataset is a validated, open-sourced linked dataset containing 20 years (2003-2022) of climate, environmental, socioeconomic, and health dimensions at the barangay (village) level across twelve Philippine cities (Dagupan, Palayan, Navotas, Mandaluyong, Muntinlupa, Legazpi, Iloilo, Mandaue, Tacloban, Zamboanga, Cagayan de Oro, Davao).</p> <p>The full documentation can be accessed <a href="https://thinkingmachines.github.io/project-cchain">here</a>.</p> <p>The tables are designed in a way that users can <strong>choose variables that are most relevant</strong> to their focus city and use case, and <strong>link these variables</strong> to form a single dataset by merging using standard geography codes and calendar dates. This can be done using the provided <a href="https://drive.google.com/drive/folders/123MrMXSVT6149MvJ8hGoDgN1s-YlQoH_">linking notebook</a>, or offline using the user's own code.</p> <p>Here are some tips on how make most use of this dataset:</p> <ul> <li> <p><strong>Focus on one location.</strong> Starting with a detailed analysis of one location allows for a better understanding of the local dynamics, which may differ across locations.</p> </li> <li> <p><strong>Choose one health data source.</strong> Pick one of either a central or local data source. Using two different data health sources is not advised because it will lead to double/overcounting of disease cases.</p> </li> <li> <p><strong>Do not use all variables at once- do a literature review first to identify possible key variables</strong>. to identify possible key variables. More often than not, using all variables is not necessary and may even yield subpar results.</p> </li> <li> <p><strong>Check data availability</strong> on your focus location and make sure they fit the requirements of your study.</p> </li> </ul>
opXRD: Open Experimental Powder X-ray Diffraction Database
<p>In this publication, we provide a new open powder X-ray diffraction (opXRD) dataset that collects a broad range of patterns from experiments. Our opXRD dataset has been curated by collecting the accumulated powder data from multiple large research groups and institutions with high-throughput XRD facilities. It contains pXRD patterns from single and multiphase materials from a wide variety of materials classes. </p>
Spatiotemporal determinants of response to neoadjuvant radiotherapy and immunochemotherapy in locally advanced mismatch repair proficient rectal cancer (TRIUNITE-01): an open-label, single-arm, phase 2 trial
<p>This dataset contains the raw CyTOF images, gene expression RNAseq and clinic data associated with the paper "Spatiotemporal determinants of response to neoadjuvant radiotherapy and immunochemotherapy in locally advanced mismatch repair proficient rectal cancer (TRIUNITE-01): an open-label, single-arm, phase 2 trial" (SHEN et al. 2024). The MCD files output by CyTOF IMC were exported to one TIFF per channel per sample.</p>
Pore-Opening and Ion-Conduction Mechanism in Channelrhodopsins C1C2, ChR2, and iChloC by Computational Electrophysiology and Constant-pH Simulations
<p>The simulation run input files, comprising the starting configuration and all necessary parameters for performing the<br>MD simulations.</p>
An open-source nnU-net algorithm for automatic segmentation of MRI scans in the male pelvis for adaptive radiotherapy
<p>Data related to the article:</p> <p>Front. Oncol.</p> <p>Sec. Radiation Oncology</p> <p>Volume 13 - 2023 | doi: 10.3389/fonc.2023.1285725</p> <p> </p> <p>An open-source nnU-net algorithm for automatic segmentation of MRI scans in the male pelvis for adaptive radiotherapy</p> <p>Ebbe Laugaard Lorenzen 1,2*, Bahar Celik 1, Nis Sarup1, Lars Dysager3, Rasmus Lübeck Christiansen1, Anders Smedegaard Bertelsen1, Uffe Bernchou1,2, Søren Nielsen Agergaard1, Maximilian Lukas Konrad1, Carsten Brink1,2*, Faisal Mahmood1,2, Tine Schytte2,3, Christina Junker Nyborg3</p> <p>1 Laboratory of Radiation Physics, Department of Oncology, Odense University Hospital, J. B. Winsløws Vej 4, 5000 Odense C, Denmark </p> <p>2 Department of Clinical Research, University of Southern Denmark, J.B. Winsløws Vej 19 3., 5000 Odense C, Denmark</p> <p>3 Department of Oncology, Odense University Hospital, J. B. Winsløws Vej 4, 5000 Odense C, Denmark</p> <p>* Correspondence: </p> <p>Ebbe Laugaard Lorenzen</p> <p>ebbe.lorenzen@rsyd.dk</p> <p>Carsten Brink </p> <p>carsten.brink@rsyd.dk</p> <p> </p> <p>NOTE: Version 2 of this repository contains the nnU-Net v2 model, while version 1 contains the original, nnU-Net v1 model</p> <p> </p>
Data underlying "EVE is an open modular data analysis software for event-based localization microscopy"
<p>Data underlying the manuscript "EVE is an open modular data analysis software for event-based localization microscopy"</p> <p>Contains raw EBS-recorded SMLM (eveSMLM) data of DNA-PAINT nanoruler, E.coli cell, and aTubulin network in Cos-7 cells (3D and high density acquisitions).</p>
Refactoring Code Smells in Open Source Projects: A Hands-on Approach to Teaching Software Maintenance
<p>Code smells are suboptimal code structures that can undermine software quality and maintainability. On the one hand, software engineers commonly apply refactoring techniques to address these deficiencies and improve internal quality attributes. On the other hand, when performed manually and without discipline, refactoring can lead to code degradation. Despite its importance, refactoring and code smells are rarely explored in depth in undergraduate computing courses, which can be reflected in industry practices. To address this gap, this paper presents a hands-on approach to teaching code smell refactoring through contributions to Open Source Software (OSS) projects, an environment where developers with diverse skill levels collaborate, and maintaining code quality is particularly challenging. Code smells accumulate over time in such scenarios, hindering software evolution and collaboration. Our study in two undergraduate Software Quality and Software Maintenance courses expands on previous findings by incorporating an in-depth analysis of students’ learning experiences. The results indicate that: (i) students rec- ognized improvements in code quality after refactoring; (ii) they identified strong connections between refactoring, testing, and debugging; (iii) their confidence decreased when refactoring required changes across multiple files; (iv) code complexity posed a significant challenge to refactoring; (v) students’ choices of refactoring techniques were influenced by project structure and personal preferences, often combining multiple techniques to address a single smell; (vi) in some cases, refactoring introduced new code smells; (vii) the longest refactoring efforts were also the most likely to reintroduce code smells; (viii) contributing to OSS projects improved students’ programming skills and fostered a sense of professional growth; (ix) students faced challenges in understanding OSS contribution processes, particularly regarding issue resolution, adherence to contribution guidelines, and responding to maintainer feedback; (x) automated checks and review workflows varied across projects, affecting students’ ability to submit successful contributions; and (xi) despite these challenges, engagement with OSS enabled students to gain practical experience in collaborative software development. Our findings offer valuable insights for software engineering educators seeking to integrate refactoring practices into coursework while leveraging OSS contributions as an educational tool.</p>
Supplementary Material for The Impact of COVID-19 on Open Source Development Activities: A Multi-Method Study
<p><strong>Context:</strong> The social isolation measures resulting from the COVID-19 outbreak changed work practices in various sectors, especially with the shift to working from home. However, it is still unclear the implications of the pandemic on the maintenance and evolution of open-source software (OSS). Objective: In this study, we analyze the effects of COVID-19 on the development activity of OSS and how social isolation changed the productivity and emotional state of OSS contributors. <strong>Method:</strong><br>To investigate this issue, we have conducted a multi-method study. We first quantitatively investigated how the COVID-19 outbreak impacted the development activity of open-source projects by mining the development history of 155 open-source projects. We then qualitatively investigated the perceptions of open-source core developers about the impact of COVID-19 on their activities, using a survey as an instrument. <strong>Results:</strong> Our results indicate that the pandemic led to some effect on the development<br>activity of OSS repositories, especially in the early days of the outbreak. For instance although we observe an increase in the number of pull requests accepted, our results also indicate a sudden increase in the turnover rate of core developers. However, a few months after the declaration of the current pandemic, our results suggest stabilization in these metrics. Other effects were more far-reaching, such as a decrease in newcomers throughout the observed period after the pandemic was declared. Some findings are supported by the results of our qualitative study, whose results indicate that most of the respondents of our survey consider that COVID-19 did not change their productivity substantially. <strong>Conclusions:</strong> Our findings can help practitioners and researchers to better understand the effect of COVID-19 on the software engineering field.</p>
Data and codes for figures in "Open water in sea ice causes high bias in polar low-level clouds in GFDL CM4"
Open the record for dataset details and reuse information.
FIGURE 4. Discriminant function analysis depicting morphological differentiation within the C. vittatus-hansenae group. Close grey circle indicates C. vittatus Group II. Open circle denotes C. hansenae Group I. Closed black circle represents C. hansenae Group II in Re-evaluating the taxonomic status of Chiromantis in Thailand using multiple lines of evidence (Amphibia: Anura: Rhacophoridae)
FIGURE 4. Discriminant function analysis depicting morphological differentiation within the C. vittatus-hansenae group. Close grey circle indicates C. vittatus Group II. Open circle denotes C. hansenae Group I. Closed black circle represents C. hansenae Group II.
Fig. 3. A in New Open Aquarium System to Breed Larvae of Water Beetles (Coleoptera: Dytiscidae)
Fig. 3. A photograph of the breeding tank. ST, silicon tube for water supply. MP, mesh for partitioning. OT, outlet tube. Fresh tap water after de-chlorination is introduced as shown in Figure 2.
Open and Reproducible Dataset of Bibliometric Indicators of Russia
<p>Version 1. Data collected on 03-04 November 2023.</p><p><i>by Ivan Sterligov, HSE University, </i><a href="mailto:ivan.sterligov@gmail.com"><i>ivan.sterligov@gmail.com</i></a></p><p>See readme.md for details</p><p>The dataset comes with python code that lets anyone collect and update all the data automatically, provided they set up a free access to Scopus API and conform to the rules of API usage set by Elsevier.</p><p>The dataset is a part of a broader academic project aimed at tracking dramatic changes in Russian publication output after 2022 and generally focuses on the period starting at 2018. This is an academic non-commercial research project and includes no Scopus metadata "as is", and no matadata on any particular paper, author or journal, only publication counts obtained using proprietary queries and journal lists constructed by its author. No citation metrics are used or published.</p><p>Dataset will be hopefully updated and new versions posted at Zotero. You can cite specific version DOI to be sure that you reference particular values. Also, the dataset as a whole has a common DOI which resolves to the newest version.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.