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opennotspecifiedMay 2023View details →

FIGURES 19 & 20 in Towards resolving the problematic status of the digenean genus Astiotrema Looss 1900: Taxa excluded from Astiotrema (sensu stricto) with special reference to plagiorchioid genera closely related to the restricted concept of Astiotrema

FIGURES 19 & 20. Taxa recognized within Longigula Qiu, Zhang & Li, 1983. 19. Longigula auris Qiu, Zhang & Li, 1983, ventral view, redrawn from Qiu et al. (1983, fig. 1). 20. Longigula papillus Qiu, Zhang & Li, 1983, ventral view, redrawn from Qiu et al. (1983, fig. 4). Abbreviations: AT, anterior testis; Ce, cecum; CP, cirrus-pouch; Es, esophagus; GP, genital pore; Me, metraterm; OS, oral sucker; Ov, ovary; Ph, pharynx; PL, papillate lobes; PP, pars prostatica; PT, posterior testis; SR, seminal receptacle; SV, seminal vesicle; Ut, uterus; VF, vitelline follicle; VL, ventrolateral lappets; VS, ventral sucker. Scale bars: Fig. 19 = 1,000 µm; Fig. 20 = 1,000 µm.

opennotspecifiedJun 2023View details →

FIGURE 1. A in Pristurus guweirensis Haas, 1943 (Gekkota: Sphaerodactylidae): the most abundant and widely distributed species of Pristurus previously referred to as Pristurus sp. 1

FIGURE 1. A) Dorsal view, gular region and tail section of Pristurus rupestris, P. guweirensis stat. nov. and P. migiurtinicus (MSNM Re97) females, respectively. As can be seen from all the photographs deposited in MorphoBank (Supp. Table 1), the dorsal pattern in P. guweirensis stat. nov. and P. rupestris is quite variable. B) Distribution range of P. rupestris (blue), P. guweirensis stat. nov. (green), and P. migiurtinicus (red; known only from a single locality). Stars show the type locality for each species. The question mark shows the locality of an unconfirmed P. flavipunctatus species complex specimen (assigned to "P. rupestris" by Scortecci, 1935).

opencc-by-4.0Jun 2023View details →

High-resolution KIR allele annotations for HPRC 47 assemblies and other reference genomes using SKIRT

Leveraging the high-quality genome assemblies from the Human Pangenome Reference Consortium (HPRC), we present a novel bioinformatic tool, the Structural KIR annoTator (SKIRT), to annotate, identify, and discover hundreds of novel alleles, more than a dozen structural variations among KIR genes, and all haplotypes carrying novel alleles, confirming KIR genetic diversity. The use of HPRC data needs to comply with the rules announced by HPRC.

opencc-by-4.0Jun 2023View details →

Adjective+noun phrases that readers use in reviews to refer to the style of the text

Adjective+noun phrases that readers use in reviews to refer to the style of the text <table> <tbody> <tr> <td> </td> <td> Stijl </td> <td> Taal </td> <td> Toon </td> <td> Woord </td> <td> Zin </td> <td> Uitdrukking </td> </tr> <tr> <td> Reader's experience </td> <td> 29% </td> <td> 57% </td> <td> 77% </td> <td> 39% </td> <td> 28% </td> <td> 34% </td> </tr> <tr> <td> Qualitative evaluation </td> <td> 26% </td> <td> 4% </td> <td> 6% </td> <td> 10% </td> <td> 24% </td> <td> 7% </td> </tr> <tr> <td> Features of text </td> <td> 5% </td> <td> 7% </td> <td> 1% </td> <td> 16% </td> <td> 39% </td> <td> 4% </td> </tr> <tr> <td> Other references </td> <td> 10% </td> <td> 6% </td> <td> 12% </td> <td> 4% </td> <td> 4% </td> <td> 5% </td> </tr> <tr> <td> Author </td> <td> 19% </td> <td> 4% </td> <td> 3% </td> <td> 4% </td> <td> 1% </td> <td> 1% </td> </tr> <tr> <td> Region </td> <td> 1% </td> <td> 19% </td> <td> 1% </td> <td> 10% </td> <td> 2% </td> <td> 40% </td> </tr> <tr> <td> Time </td> <td> 2% </td> <td> 3% </td> <td> 1% </td> <td> 2% </td> <td> 0% </td> <td> 3% </td> </tr> <tr> <td> Quantitative evaluation </td> <td> 0% </td> <td> 1% </td> <td> 0% </td> <td> 12% </td> <td> 2% </td> <td> 5% </td> </tr> </tbody> </table>

opencc-by-4.0Jun 2023View details →

Experiments data for "Reference Architecture for serverless Machine Learning"

Data collected during experiments in my bachelor thesis.

opencc-by-nd-4.0Aug 2023View details →

Single-cell somatic copy number variants in brain using different amplification methods and reference genomes

Variable and constant sized bins for GRCh38 and T2T-Chm13 were generated using the buildGenome scripts provided with Ginkgo (<a href="https://github.com/robertaboukhalil/ginkgo/tree/master/genomes/scripts">https://github.com/robertaboukhalil/ginkgo/tree/master/genomes/scripts</a>).

thus and genetic % 1 than less indicates Green . ) kb 15 . ca ( Ixodes of ) individuals 40 ( species bold 34 in of are genomes study present mitochondrial the in entire sequenced the Species among. differences reference for genetic, species ) % ( same Pairwise the. 3 from FIGURE sequences in A new subgenus, Australixodes n. subgen. (Acari: Ixodidae), for the kiwi tick, Ixodes anatis Chilton, 1904, and validation of the subgenus Coxixodes Schulze, 1941 with a phylogeny of 16 of the 22 subgenera of Ixodes Latreille, 1795 from entire mitochondrial genome sequences

thus and genetic % 1 than less indicates Green . ) kb 15 . ca ( Ixodes of ) individuals 40 ( species bold 34 in of are genomes study present mitochondrial the in entire sequenced the Species among. differences reference for genetic, species ) % ( same Pairwise the. 3 from FIGURE sequences

Fig. 7 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 7. Levels of major glucosinolates in leaves of first year rosette plants of the Gtype (A) and P-type (B) of Barbarea vulgaris in plants subjected to various challenges or no challenge as control. The contrasting general profile of the types is evident from dominance of BAR in the G-type and EBAR in the P-type. Treatment codes are: Control, un-challenged plants harvested after 7 days; Pieris 3d and Pieris 7d, herbivory by Pieris brassicae larvae until harvest at either day 3 or day 7; Plutella, herbivory by Plutella xylostella for 4 days; CuCl2, spraying of leaves with 10 mM CuCl2 (aq.) followed by recovery for 4 days. Bars represent means, whiskers indicate standard deviation (N = 3 for each group).

Fig. 6 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 6. Lack of the aliphatic glucosinolate (GSL) Pren (107) in B. vulgaris and spiking of pure (intact) Pren for establishing the limit of detection. A. Total ion chromatogram for the three dominating peaks in G-type B. vulgaris (dGSL preparation). B. Extracted ion trace for desulfo Pren in the same extract as A, showing lack of detection. C, D, E. Results of serial spiking of the crude extract with serial 10-fold dilutions of Pren before the desulfation procedure, showing linearity also at low levels and ability to detect trace levels.

Fig. 9 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 9. Extracted ion HPLC-MS chromatograms of desulfoglucosinolates prepared from glucosinolates (GSLs) in seeds (A–F) or leaves (G) of Reseda luteola and seeds of Reseda odorata (H). The three major peaks (A, B, C) represent PE, IM and BAR, much like many Barbarea spp. Focus on minor peaks (D) allowed conclusive identification of EBAR, confirmed by tR and the characteristic MS2 spectrum. A range of putative derivatives were not detected (E, F), but an unidentified hydroxybutylGSL was present (G), as was a known glycoside in R. odorata.

Fig. 5 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 5. MS2 spectra of desulfated glucosinolates (GSLs) confirming the identity of two 2-3homoMet-derived GSLs in C. hirsuta. While the spectrum of desulfo Buen contains only the usual fragments for this type of dGSL (a, [anhydroGlc+Na]+; b, [thioGlc+Na]+), the spectrum of desulfo Peen contains an additional usual fragment (c, [M-anhydroGlc Na]+) and two unusual + fragment ions suggesting a structure-specific cyclization and exchange of O during fragmentation: 201, [gluconolactone Na]+ and 152, [C H NS Na]+. + 6 11 + The unusual fragments can be rationalized as fragment a plus O and fragment c minus O, respectively.

Fig. 3 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 3. HPLC-MS chromatograms of desulfoglucosinolates (dGSLs) prepared from glucosinolates (GSLs) in Planodes virginica (A) and Nasturtium officinale (B–C) seeds, showing qualitative similarities and quantitative contrasts. Major peaks (B) from N. officinale revealed many of the same GSLs as in A, but levels of EBAR (40R) were much lower while levels were much higher for the biosynthetic precursor PE (105). A focus on trace peaks from N. officinale (C) revealed sharp peaks representing a range of minor constituents. Due to the closely eluting peaks, the latter chromatograms (B–C) were made by combining extracted ion chromatograms corresponding to [M+Na]+ of the indicated dGSLs. In C, the m/z 366 signal of d105 was omitted to allow visualization of minor coeluting peaks. An asterisk after a peak number indicates tentative identification. HPLC-MS conditions as in Olsen et al. (2016). TIC, total ion chromatogram, EIC, extracted ion chromatogram.

Fig. 4 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 4. HPLC-MS chromatogram of desulfoglucosinolates (dGSLs) prepared from glucosinolates (GSLs) from leaves (A) and petioles (B) of horseradish (Armoracia rusticana), focusing on trace level GSLs. The chromatograms were made by combining extracted ion chromatograms corresponding to [M+Na]+ of the indicated dGSLs, from analyses that were much overloaded with respect to the dominating dGSL d107 from Pren. In panel A, an insert shows magnification of the chromatogram from 5.2 to 5.8 min. Neither suggested BAR nor EBAR were detectable. In panel B, only extracted ion chromatograms of m/z 382 (BAR/EBAR), 352 (BZ), 366 (PE), 380 (3PP), 394 (4PB), 408 (5PP at high tR and 6mSOh at 5.4 min), 422 (7mSOh) and 436 (8mSOo) are included. Unlabeled trace peaks did not exhibit a combination of tR and m/z suitable for any of the mentioned candidates. HPLC conditions as in Olsen et al. (2016). Panel A depicts analysis of the Copenhagen garden accession; panel B from the naturalized population at Lake Fures¨o. An asterisk after a peak number indicates tentative identification.

Fig. 2 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 2. Detection of thioglucose-acylated glucosinolates (GSLs) by HPLC-MS of desulfated derivatives prepared from the indicated species. (A–C) Analysis of seeds of Arabidopsis thaliana Col-0 used as reference material for characteristic GSLs. Shown are the total ion chromatogram (A) and extracted ion chromatograms for sodium adducts of desulfo 6′Bz 4BzOb (d125) (B) and desulfo 6′Bz 4mSb (d127) (C). (D–F) Analysis of seeds of Barbarea grayi for dominating GSLs. Shown are total ion chromatograms (D), and extracted ion chromatograms for sodium adducts of desulfo 6'iF BAR (d131S) (E) and desulfo 6'iF PE (d129) (F).

Fig. 1 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates

Fig. 1. MS2 spectra of pairs of desulfoglucosinolates with and without a side chain double bond. Four short chain desulfoglucosinolates were investigated, including Na+ adducts of all (A–D) and in addition H+ adducts of the methylthio substituted (E–F), as indicated in each spectrum. The desulfo derivative of the putative 9mSn ([89]), poorly characterized in the literature, was also investigated (G).

FIGURE 10 in Taxonomy and nomenclature of Kalanchoe beharensis (Crassulaceae subfam. Kalanchooideae), a variable, arborescent species from Madagascar, with reference to its horticultural derivatives

FIGURE 10. Material included in Kalanchoe beharensis Hairy Group (continued). A. Kalanchoe beharensis 'Napoleon's Hat'. B. Kalanchoe beharensis 'Oakleaf. C. Kalanchoe beharensis 'Pixel'. All photographs: Gideon F. Smith.

FIGURE 9 in Taxonomy and nomenclature of Kalanchoe beharensis (Crassulaceae subfam. Kalanchooideae), a variable, arborescent species from Madagascar, with reference to its horticultural derivatives

FIGURE 9. Material included in Kalanchoe beharensis Hairy Group. A–C. Large growing plants with leaves variously covered in a golden-bronze tomentum are marketed and sold under a range of monikers, some of which are likely trade designations only. The plants illustrated in A to C are generally available under K. beharensis 'Aureo-aeneus', although this is not an established cultivar name. The variant illustrated in B has entire leaf margins. The plant of K. beharensis illustrated in C is cultivated in the Shoenberg Temperate House in the Missouri Botanical Garden, St Louis, U.S.A. D–F. Cultivar names, or at least monikers presented as cultivar names, such as K. beharensis 'Brown Dwarf', K. beharensis 'Monstrose', K. beharensis 'Nana', and K. beharensis 'Curly', are generally applied to a range of small-growing, hairy variants of K. beharensis, some of which are illustrated here. All photographs: Gideon F. Smith.

FIGURE 2 in Taxonomy and nomenclature of Kalanchoe beharensis (Crassulaceae subfam. Kalanchooideae), a variable, arborescent species from Madagascar, with reference to its horticultural derivatives

FIGURE 2. Plants of Kalanchoe blossfeldiana in the horticultural trade sometimes referred to as "var. feuerblüte Hort.", have brilliant red flowers borne on firm, erect peduncles. Jacobsen (1954: 819, 1986: 609) speculates that it might be a hybrid between K. blossfeldiana and K. glaucescens (Britten 1871: 393). One of the earliest-documented, artificially produced hybrids between representatives of K. subg. Kalanchoe and K. subg. Bryophyllum, i.e., across subgenus boundaries, were recorded by Resende (1956: 241–242) when he produced hybrids between K. blossfeldiana "var. feuerblüte Hort." [included in K. subg. Kalanchoe] and K. daigremontiana Raymond-Hamet & Perrier de la Bâthie (1914: 128) [included in K. subg. Bryophyllum]. Photograph: Gideon F. Smith.

FIGURE 8 in Taxonomy and nomenclature of Kalanchoe beharensis (Crassulaceae subfam. Kalanchooideae), a variable, arborescent species from Madagascar, with reference to its horticultural derivatives

FIGURE 8. Material included in Kalanchoe beharensis Glabrous Group. A. Kalanchoe beharensis 'Baby's Bottom'. Note that developing leaves are often hairy (top of the photograph), but the tomentum is soon lost to yield glabrous leaves (centre of photograph). B. Completely glabrous, medium-sized to large variants of K. beharensis are known under various cultivar names, trade designations, or even common names such as "Slick", "Blue Slick", "Furless", "nuda Hort.", and "var. glabra [Hort.]". C. A glabrous variant of K. beharensis, horticulturally known as K. beharensis 'Subnuda', growing in an azure blue pot in the Jardin Majorelle in Marrakech, Morocco. Photograph credits: Gideon F. Smith (A and B) and Estrela Figueiredo (C, photograph taken on 12 April 2017).

FIGURE 7. From 1935 until 1978 in Taxonomy and nomenclature of Kalanchoe beharensis (Crassulaceae subfam. Kalanchooideae), a variable, arborescent species from Madagascar, with reference to its horticultural derivatives

FIGURE 7. From 1935 until 1978, Edward Charles Hummel (1903–1979), with his wife, Minnie Belle Hummel née Byrne (1904–1993), operated Hummel's Exotic Gardens. This photograph of the Hummels, with their children, Edward Myron and Marquetta Belle also present, was taken around 1935 in the family's cactus and succulent garden in Inglewood, California, U.S.A. Note the two different leaf forms of Kalanchoe beharensis in the centre on the right of the photograph. See the caption to Figure 2 in Mitich (1993: 91) for more information. Photographer unknown. Photograph © of the CSSA and reproduced with their permission (see the 'Acknowledgements').