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6,383 results for “isolates”
FIGURE 3 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 3. Liolaemus crandalli, holotype adult male in dorsal and ventral view (MLP.S 2631), from Auca Mahuida volcano type locality, Pehuenches Department, Neuquén, Argentina.
FIGURE 5 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 5. Map of northern Neuquén and southern Mendoza region showing the complex landscape of northwestern Patagonia. Arrow marks Liolaemus crandalli type locality. Small red circles mark L. crandalli collection/observed localities. Orange dotted line marks distributional limits of species related to the Liolaemus elongatus clade; question mark in Chachahuen Mountains are populations of uncertain phylogenetic placement. Yellow dotted line marks Auca Mahuida Volcanic Field boundaries. Main mountains ranges, cities, and roads are marked. Colorado River drainage is marked in blue. Inset: Region in South America.
FIGURE 1 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 1. Bayesian concatenated gene tree showing the topological position of Liolaemus crandalli with other members of the L. elongatus clade, and species of the L. petrophilus and L. kriegi clades. Numbers above nodes are posterior probability values, blue thick lines represent posterior probability values> 0.95.
FIGURE 2 in Molecular phylogenetic relationships of the lizard clade Liolaemus elongatus (Iguania: Liolaemini) with the description of a new species from an isolated volcanic peak in northern Patagonia
FIGURE 2. Liolaemus crandalli (MLP.S 2631) adult male in dorsal and ventral view, from Auca Mahuida volcano type locality, Pehuenches Department, Neuquén province, Argentina.
FIGURE 1 in Leptobacillium cavernicola, a newly discovered fungal species isolated from several Paleolithic-decorated caves in France
FIGURE 1. Phylogenetic studies of Leptobacillium cavernicola strains through maximum likelihood and Bayesian inference in relation to Leptobacillium spp. strains for which at least two different DNA loci were available in the NCBI GenBank database. The trees were obtained from a dataset including 32 taxa leading to a concatenated alignment of 4311 bp from six nuclear regions (ITS, LSU, SSU, RPB1, RPB2 and TEF1-α). The trees were rooted with Gamszarea wallacei CBS 101237 as an outgroup. Bootstrap values greater than or equal to 70 % and Bayesian posterior probabilities greater than or equal to 0.70 are located close to the corresponding node. The specific strains studied are printed in bold. The two strains that are not included in a gray area are those for which the identification is uncertain according to the phylogenetic studies.
FIGURE 3 in Leptobacillium cavernicola, a newly discovered fungal species isolated from several Paleolithic-decorated caves in France
FIGURE 3. Leptobacillium cavernicola (Photographer: J. LEPLAT) a–b. Upper and reverse views of the culture on MEA (14 d at 25 °C). c–d. Upper and reverse views of the culture on PDA (14 d at 25 °C). e. Long chains of cylindrical to fusiform microconidia. The arrow indicates the typical first-formed conidium, which is shorter, obovoid to pyriform with a rounded distal end. f. Phialides, indicated by arrows. Scale bars: e–f = 10 µm.
On the predictability of phenotypic divergence in geographic isolation
<p><span>Do related populations that are separated by barriers predictably evolve differences from one another over time, or is such divergence idiosyncratic and unpredictable? We test these </span><span>alternatives by investigating patterns of trait evolution for 54 sister pairs of Andean forest birds that live in similar environments on either side of the arid Marañón Gap, a strong dispersal barrier for humid montane species. We measured divergence in both sexual (song and plumage) and ecological (beak size and beak shape) traits. Sexual traits evolve in a clock-like fashion, with trait divergence positively correlated with genetic distance (r = 0.6 to 0.7). In contrast, divergence in ecological traits is uncorrelated or only loosely correlated with genetic distance (r = 0.0 to 0.3). Thus, for geographically isolated Andean montane forest birds that live in similar environments, divergence is predictable in sexual traits, but not for ecological traits. This means that sexual trait divergence occurs independently of adaptive ecological divergence within the mega-diverse tropical Andean avifauna. Last, we show that variation in genetic divergence across a biogeographic barrier is associated</span><span> with traits that are proxies for species' opportunities for dispersal (low elevation limit and elevational niche breadth), but not with traits that are proxies for species' dispersal abilities (hand-wing index and foraging strata).</span></p>
Sulfitobacter_geojensis_isolate_huxleyi1516
<p>Genome assembly of the bacterial strain Sulfitobacter geojensis which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink. </p>
Phaeobacter_inhibens_isolate_huxleyi1516
<p>Genome assembly of the bacterial strain Phaeobacter inhibens which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink. </p>
Sulfitobacter_pontiacus_isolate_huxleyi1516
<p>Genome assembly of the bacterial strain Sulfitobacter pontiacus which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.</p>
Marinobacter_sp_isolate_huxleyi1516
<p>Genome assembly of the bacterial strain Marinobacter sp which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink. </p>
Alteromonas_macleodii_isolate_huxleyi1516
<p>Genome assembly of the bacterial strain Alteromonas macleodii which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink. </p>
Dataset: Complete Genome Sequences of Sathuperi and Shamonda viruses isolated in Japan
<p>This file contains supplementary information corresponding to the manuscript: "Complete Genome Sequences of</p> <p>Sathuperi and Shamonda viruses isolated in Japan".</p>
FIGURE 3 in Akanthomyces zaquensis (Cordycipitaceae, Hypocreales), a new species isolated from both the stroma and the sclerotium of Ophiocordyceps sinensis in Qinghai, China
FIGURE 3. Akanthomyces zaquensis (CGMCC 19934) on PDA, similar to those on MEA and PCA. a–d. Phialides and conidia; e–f. conidia. Scale bars: a–f = 10 μm.
FIGURE 2 in Akanthomyces zaquensis (Cordycipitaceae, Hypocreales), a new species isolated from both the stroma and the sclerotium of Ophiocordyceps sinensis in Qinghai, China
FIGURE 2. Akanthomyces zaquensis (CGMCC 19934). a–b. Strains grown on different media after 10 days at 20 °C; c–d. Strains grown on different media after 10 days at 25 °C. Scale bars: a–d = 2 cm.
FIGURE 1 in Akanthomyces zaquensis (Cordycipitaceae, Hypocreales), a new species isolated from both the stroma and the sclerotium of Ophiocordyceps sinensis in Qinghai, China
FIGURE 1. Phylogenetic tree from ML and BI analyses of six-gene (ITS, SSU, LSU, tef1, rpb1 and rpb2) dataset showing the relationships of Akanthomyces and Lecanicillium species. Values above branches before and after backslash represent ML bootstrap proportions greater than 70% and posterior probabilities (PP) greater than 95%.
Data from: Evidence of low within-pair genetic relatedness in a relict population of Thorn-tailed Rayadito despite long-term isolation
<p>Investigating whether mating patterns are biased in relation to kinship in isolated populations can provide a better understanding of the occurrence of inbreeding avoidance mechanisms in wild populations. Here we report on the genetic relatedness (<em>r</em>) among breeding pairs in a relict population of Thorn-tailed Rayadito (<em>Aphrastura spinicauda</em>) in north-central Chile that has experienced a long-term history of isolation. We used simulations based on eight years of data to assess whether mating is random with respect to relatedness. We found that mean and median population values of pair relatedness tended to be lower than randomly generated values, suggesting that mating is not random with respect to kinship. We hypothesize that female-biased dispersal is the main mechanism reducing the likelihood of mating among kin, and that the proportion of related pairs (i.e., <em>r </em>> 0.125) in the study population (25%) would presumably be higher in the absence of sex-biased dispersal. The occurrence of other mechanisms such as extra-pair copulations, delayed breeding and active inbreeding avoidance through kin discrimination cannot be dismissed and require further study.</p>
SSR results of 13 markers of 609 Pyricularia oryzae isolates in Vietnam
<p>Dataset represents values of SSR markers, in column, of 609 <em>Pyricularia</em> <em>oryzae</em> isolates, in row. "NA" means the data was missed. Those isolates that are name coded in VNN were collected from North Vietnam; the other, coded VNC, was collected in Central Vietnam. </p>
Supplementary Information for "Evolution upon leather manufacturing: comparison of the two Halobacterium salinarum strains isolated in the early 20-th century with the twin laboratory strains NRC-1 and R1"
<p>This set of files contains Supplementary Data associated with the emerging manuscript "Evolution upon leather manufacturing: comparison of the two <em>Halobacterium salinarum</em> strains isolated in the early 20-th century with the twin laboratory strains NRC-1 and R1." by Friedhelm Pfeiffer and Mike Dyall-Smith.</p> <p>The manuscript provides a detailed comparison of the complete genome sequences from four strains of <em>Halobacterium salinarum</em>:<br> 91-R6 (NRC 34002, the type strain of <em>Halobacterium salinarum</em>);<br> 63-R2 (NRC 34001, a strain originally reported as 'cutirubra');<br> NRC-1 and R1 (two laboratory strains).</p> <p>“Supplementary Methods” extends the Methods section of the manuscript, providing additional detail.</p> <p>“Supplementary Text S1” provides additional detail for the comparison of the chromosome from strain 63-R2 to those from strains NRC-1 and R1.</p> <p>“Supplementary Text S2” provides additional details for the comparison of the chromosomes from strains 63-R2 and 91-R6.</p> <p>“Supplementary Text S3” provides additional detail for the comparison of the plasmids from strain 63-R2 to those from strains NRC-1 and R1.</p> <p> </p> <p>“Supplementary Table S4” correlates positions from “core” sequences (devoid of strain-specific mobile genetic elements) to the original genome sequences.</p>
A Three-step Process to Isolate Large Quantities of Bioactive Sesquiterpene Lactones from Cichorium intybus L. Roots and Semi-synthesis of Chicory STLs Standards
<p>Supplementary Information:</p> <p>NMR spectra of DHLc, Lc, DHLc-Me-oxalate, Lc-Me-oxalate, DHLc-oxalate, Lc-oxalate, DHLc-glycoside; Figure S1: HPLC profiles (254 and 320 nm) of a water/methanol 50/50 and pure water extracts and different content in 3-CQA; Figure S2: Base peak chromatogram (BPC, All − MS) of a water chicory extract obtained in the positive mode; diagnostic fragment ions in the positive mode for DHLc-gly, DHLc-ox, DHLc, Lc-ox, Lc.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.