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Supplementary material 5 from: Ushio M, Murakami H, Masuda R, Sado T, Miya M, Sakurai S, Yamanaka H, Minamoto T, Kondoh M (2018) Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding and Metagenomics 2: e23297. https://doi.org/10.3897/mbmg.2.23297
The relationship between regression residuals and copy numbers of standard DNAs for 52 samples. Dashed line indicates zero residuals.
Supplementary material 1 from: Li J, Lin R-R, Zhang Y-Y, Hu K-J, Zhao Y-Q, Li Y, Huang Z-R, Zhang X, Geng X-X, Ding J-H (2018) Characterization of the complete mitochondrial DNA of Theretra japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae). ZooKeys 754: 127-139. https://doi.org/10.3897/zookeys.754.23404
Phylogenetic analysis : Explanation note: ML tree constructed based on the cox1 barcodes of genus Theretra using B. mori as outgroups. The asterisk represents the species researched presently.
Supplementary material 1 from: Galasso G, Domina G, Adorni M, Ardenghi NMG, Bonari G, Buono S, Cancellieri L, Chianese G, Ferretti G, Fiaschi T, Forte L, Guarino R, Labadessa R, Lastrucci L, Lazzaro L, Magrini S, Minuto L, Mossini S, Olivieri N, Scoppola A, Stinca A, Turcato C, Nepi C (2018) Notulae to the Italian alien vascular flora: 5. Italian Botanist 5: 45-56. https://doi.org/10.3897/italianbotanist.5.25910
Supplementary data : Explanation note: 1. Nomenclature updates; 2. Status/Note updates; 3 Distribution updates; 4. Synonyms, misapplied or included names.
FIGURE 3 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 3. Male genitalia of Yphthimoides patricia (A–D) and Yphthimoides manasses (E–H). Y. patricia: A—Lateral view; B—Dorsal view; C—Ventral view (Detail of valvae apex and uncus); D—Aedeagus (lateral view). Y. manasses: E—Lateral view; F—Dorsal view; G—Dorsal view (Detail of valvae apex and uncus); H—Aedeagus (lateral view). Abbreviations: ae, aedeagus; gn, gnathos; sa, saccus; te, tegumen; va, valva; un, uncus.
FIGURE 10 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 10. Habitat and live adults of Yphthimoides patricia. A—General view of the habitat in Brasília, Distrito Federal; B—Close view of the cerrado in Itirapina, São Paulo; C–D—Male and female, respectively, from Brasília, Distrito Federal.
FIGURE 2. Yphthimoides manasses. A in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 2. Yphthimoides manasses. A—Male (dorsal, ventral), Ibateguara, Alagoas (ZUEC-LEP 10476); B—Female (dorsal, ventral), Ibateguara, Alagoas (ZUEC-LEP 10475); C—Male (dorsal, ventral), Camaragibe, Pernambuco (DZUP); D—Female (dorsal, ventral), São José de Mipibu, Rio Grande do Norte (DZUP). Scale bar = 1 cm.
FIGURE 6 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 6. Details of the male genitalia of Yphthimoides patricia in scanning electron microscopy. A—ventral-anterior view of uncus apex; B—detail of valva tip in ventral view showing the distinctive 'teeth'.
FIGURE 5. Yphthimoides patricia. A in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 5. Yphthimoides patricia. A—Male wing venation; B—Female wing venation; C—Male foreleg; D—Male palpus; E—Female foreleg.
FIGURE 9 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 9. Map showing localities (solid circles) for Yphthimoides patricia in Brazil and Bolivia. The gray shaded area corresponds to the limits of the cerrado vegetation.
FIGURE 4 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 4. Yphthimoides patricia: A—Eye and palpus details; B—detail of antennal shaft; C—Antennal club; D –Midleg. All from a male specimen.
FIGURE 11 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 11. Frequency distribution of pairwise individual genetic distances within (grey) and between (black) fourteen species of Yphthimoides.
FIGURE 7 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 7. Males (A–F) and females (G–L) of Yphthimoides patricia showing variation in ventral wing pattern. A—Brasília, Distrito Federal, 18.XII.2010; B—Brasília, DF, 18.XII.2010; C—Itirapina, SP; II.1999; D–F—Itirapina, São Paulo, 19.VII.2002; G—Itirapina, São Paulo, II.1999; H—Brasília, Distrito Federal, 18.XII.2010; I—Santa Rita do Passa Quatro, São Paulo, 13.III.2003; J—Belo Horizonte, Minas Gerais, 26.II.2007; K—Itirapina, São Paulo, IX. 1990; L—Brasília, Distrito Federal, IX.2005; A, B, C, G, H—wet season forms; D, E, F, K, L = dry season forms, I, J = intermediate forms. Scale bar = 1 cm.
FIGURE 8. Yphthimoides patricia. A in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 8. Yphthimoides patricia. A—Second instar, dorsal; B—Third instar, dorsal; C—Fourth (paler) and Fifth (darker) instars, dorsal; D—Two fifth (last) instar larvae, dorsal; E–F—Pupae (two different individuals), lateral; G—Pupa, ventral.
FIGURE 1. Yphthimoides patricia. A–B in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 1. Yphthimoides patricia. A–B—Male (dorsal, ventral), Brasília, Distrito Federal, 20.VI.1972 (DZ 28.804); C–D— Female (dorsal, ventral), Nova Xavantina, Mato Grosso, 17–19.VIII.1997 (DZ 28.805). E—Male holotype of Euptychia saltuensis (dorsal left, ventral right); no locality data (IML). F– Male Neotype (here designated) of Y. patricia from Chairo, La Paz, Bolivia, 11.VIII.1985 - BMNH(E) 1204805 (NHMUK) (dorsal left, ventral right). Scale bar = 1 cm. E. Photo by L. A. Kaminski.
FIGURE 12 in Redescription of Yphthimoides patricia (Hayward, 1957), with taxonomic notes on the names Euptychia saltuensis Hayward, 1962 and Yphthimoides manasses (C. Felder & R. Felder, 1867) (Nymphalidae: Satyrinae)
FIGURE 12. Limits among fourteen species of Yphthimoides based on DNA barcode sequences (ca. 658bp of cox1) obtained by a Neighbor-Joining analysis. Numbers above branches are bootstrap values. Low support values were not showed.
Supplementary material 1 from: Hody JW, Kays R (2018) Mapping the expansion of coyotes (Canis latrans) across North and Central America. ZooKeys 759: 81-97. https://doi.org/10.3897/zookeys.759.15149
Detailed list of references and data sources : Explanation note: List of references used to determine historical extent and regional first-occurrences of coyotes (Canis latrans) in North and Central America.
FIGURE 2. Raphidopus indicus Henderson, 1893 in A new species of the genus Raphidopus Stimpson, 1858 (Crustacea: Decapoda: Anomura: Porcellanidae) from Peninsular Malaysia, with additional records of R. johnsoni Ng & Nakasone, 1994 from Southeast Asia, and a key to species in the genus
FIGURE 2. Raphidopus indicus Henderson, 1893, holotype, male (cl 6.5 mm), NHM 1892.7.15.246, Madras. A, larger cheliped, dorsal vieW; B, larger cheliped, merUs and carpUs, ventral vieW; C, larger cheliped, carpUs, dorsal perpendicUlar vieW (sUrface strUctUre not draWn); D, larger cheliped, chela, dorsal perpendicUlar vieW (sUrface strUctUre not draWn); E, smaller cheliped, merUs, ventral vieW (sUrface strUctUre not draWn); F, smaller cheliped, carpUs, dorsal perpendicUlar vieW (sUrface strUctUre not draWn); G, smaller cheliped, chela, dorsal perpendicUlar vieW (sUrface strUctUre not draWn). Setae are not draWn on all figUres. Scale bars = 1.0 mm.
FIGURE 1. Raphidopus indicus Henderson, 1893 in A new species of the genus Raphidopus Stimpson, 1858 (Crustacea: Decapoda: Anomura: Porcellanidae) from Peninsular Malaysia, with additional records of R. johnsoni Ng & Nakasone, 1994 from Southeast Asia, and a key to species in the genus
FIGURE 1. Raphidopus indicus Henderson, 1893, holotype, male (cl 6.5 mm), NHM 1892.7.15.246, Madras. A, carapace and ocUlar and antennal pedUncles, dorsal vieW (transverse striae and ridges on right side not draWn); B, rostrUm, dorso-anterior vieW; C, third and foUrth thoracic sternites, ventral vieW; D, telson, external vieW; E, basal article of left antennUlar pedUncle, ventral vieW; F, left ocUlar and antennal pedUncles, dorsolateral vieW; G, left third maxilliped, lateral vieW; H–J, right second to foUrth pereopods, lateral vieW. Setae are not draWn on all figUres. Scale bars = 1.0 mm.
FIGURE 9 in A new species of the genus Raphidopus Stimpson, 1858 (Crustacea: Decapoda: Anomura: Porcellanidae) from Peninsular Malaysia, with additional records of R. johnsoni Ng & Nakasone, 1994 from Southeast Asia, and a key to species in the genus
FIGURE 9. Preserved specimens of three Raphidopus species. Entire animal, dorsal vieW (A–D); carapace, dorsal vieW (E); larger and smaller chelipeds, dorsal vieW (F). A, Raphidopus indicus Henderson, 1893, holotype, male (cl 6.5 mm), NHM 1892.7.15.246; B, Raphidopus Johnsoni Ng & Nakasone, 1994, holotype, male (cl 3.8 mm), ZRC 1992.10669; C, Raphidopus Johnsoni Ng & Nakasone, 1994, female (cl 5.9 mm), CBM-ZC 12485; D, Raphidopus brevipes n. sp., female (cl 5.1 mm), ZRC 2016.528; E, Raphidopus brevipes n. sp., male, holotype, male (cl 5.8 mm), ZRC 1992.10521; F, Raphidopus brevipes n. sp., paratypes, ZRC 1992.10522–10526.
FIGURE 8. Raphidopus brevipes, n in A new species of the genus Raphidopus Stimpson, 1858 (Crustacea: Decapoda: Anomura: Porcellanidae) from Peninsular Malaysia, with additional records of R. johnsoni Ng & Nakasone, 1994 from Southeast Asia, and a key to species in the genus
FIGURE 8. Raphidopus brevipes, n. sp. Paratypes, ambUlatory legs detached from bodies, ZRC 1992.10522–10526, Penang (A–G); male (cl 4.1 mm), ZRC 2016.528, Selangor (H–K). A, left sUpposed second pereopod, lateral vieW; B, left sUpposed second pereopod, merUs, mesial vieW (setae not draWn); C, left sUpposed second pereopod, dactylUs, lateral vieW (setae not draWn); D, left sUpposed third pereopod, lateral vieW (setae not draWn); E, left sUpposed third pereopod, merUs, lateral perpendicUlar vieW; F, left sUpposed foUrth pereopod, lateral vieW (setae not draWn); G, left sUpposed foUrth pereopod, merUs, lateral perpendicUlar vieW; H–J, meri of left second to foUrth pereopods, lateral perpendicUlar vieW (setae not draWn); K, dactylUs of left foUrth pereopod, lateral vieW (setae not draWn). Scale bars = 1.0 mm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.