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4,144 results for “ITS barcode”
FIGURE 5 in A systematic study on Endotribelos Grodhaus (Diptera: Chironomidae) from Brazil including DNA barcoding to link males and females
FIGURE 5. Endotribelos fulvidus sp. n. Male. a. Thorax, dorsal view. b. Thorax, lateral view. c. Abdmen dorsal view. d. Hypopygium, left dorsal view, right dorsal view, tergite IX removed and with detail of left superior volsella. e. Superior volsella. f. Fore tibial spine.
FIGURE 13 in A systematic study on Endotribelos Grodhaus (Diptera: Chironomidae) from Brazil including DNA barcoding to link males and females
FIGURE 13. Endotribelos jiboia sp. n. Larva. a. Antenna. b. Dorsal sclerites of head c. Pecten epipharyngis. d. mandible. e. Mentum and ventromental plate.
FIGURE. DnaSP DNA polymorphism analysis - Nucleotide variability (Pi) comparison between Strobilanthes lupulina and S. glandulata. The window length and step size were set to 600bp and 200bp respectively. The most varying regions and the commonly used barcoding regions are listed against the base-pair differences found. in Strobilanthes glandulata (Acanthaceae), a new species from Sri Lanka based on the morphological and molecular evidences
FIGURE. DnaSP DNA polymorphism analysis - Nucleotide variability (Pi) comparison between Strobilanthes lupulina and S. glandulata. The window length and step size were set to 600bp and 200bp respectively. The most varying regions and the commonly used barcoding regions are listed against the base-pair differences found.
Figure 1 in A new taxonomist-curated reference library of DNA barcodes for Neotropical electric fish (Teleostei: Gymnotiformes)
Figure 1. Percentages of 934 BOLD systems CO1 sequences (A) and 1015 GenBank CO1 sequences (B) categorized with respect to comparisons with reference library sequences. Minimum interspecific pairwise genetic divergence thresholds of 1.0% and 2.0% distinguish conspecifics (≤1.0/2.0%) and heterospecifics (>1.0/2.0%).
Combinatorial Barcode Scripts for the manuscript 'Scalable Combinatorial Synthesis of Synthetic DNA Barcode Sequences'
<p>Raw data and custom Python code for the manuscript 'Scalable Combinatorial Synthesis of Synthetic DNA Barcode Sequences'.</p>
FIGURE 1. Specimen barcoded E01137465 in Taxonomic notes on Xiphion collinum (Iridaceae)
FIGURE 1. Specimen barcoded E01137465 at E (by permission of the Curator of the Royal Botanic Garden Edinburgh).
Supplementary material 1 from: Zeng X-S, Sun C-H, Huang X-Y, Lao Y-L, Huang J-L, Li S, Zhang Q (2022) DNA barcoding of Scomberomorus (Scombridae, Actinopterygii) reveals cryptic diversity and misidentifications. ZooKeys 1135: 157-170. https://doi.org/10.3897/zookeys.1135.93631
DNA barcoding of Scomberomorus (Scombridae, Actinopterygii) reveals cryptic diversity and misidentifications
FIGURE 9 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 9. Maximum-likelihood tree (using GTR + I model, bootstrap=1000) of Mesogastrura species based on COI gene. Node values represent likelihood bootstrap value.
FIGURE 8 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 8. Mesogastrura seotalensis sp. nov.; a. Front leg of new species; b–f: Front leg, Middle leg, Hind leg, Ventral tube and Furca of M. ojcoviensis (Stach, 1919), respectively. Scale bar: 0.0025 mm. Arrows mark tenent hairs.
FIGURE 5 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 5. Mesogastrura seotalensis sp. nov.; a. Eyes of new species; b. Eyes of M. ojcoviensis (after Stach, 1919); c. Eyes of M. boneti (after Tarsia in Curia, 1941); d. Labral chaetotaxy (The arrow indicate apical chaetae); e. Maxillary outer lobe. Scale bar: 0.0025 mm.
FIGURE 2 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 2. Three caves entrance and guano sampling point inside of each caves: a. Entrance of Jangamgul cave; b. Guano sampling point of Jangamgul cave; c. 3rd entrance of Manjanggul cave; d. Guano sampling point of Manjanggul cave; e. Entrance of Seotaloreumjinjidonggul cave; f. Guano sampling point of Seotaloreumjinjidonggul cave.
FIGURE 4 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 4. Mesogastrura seotalensis sp. nov.; a. Antennal segment I to IV; b. Apical part of Ant. IV, ventral side and c. dorsal side. Scale bar: 0.05 mm.
FIGURE 3 in One new species and one new record for the genus Mesogastrura (Collembola, Hypogastruridae) from Korean caves, with DNA barcodes
FIGURE 3. Mesogastrura seotalensis sp. nov.; a. Chaetotaxy of head to Abd.V, dorsal view; b. Habitus of new species and c. M. ojcoviensis (Stach, 1919) in ethanol. Scale bar: 0.2 mm.
Supplementary material 1 from: Zhao Y, Wang H, Huang H, Zhou Z (2022) A DNA barcode library for katydids, cave crickets, and leaf-rolling crickets (Tettigoniidae, Rhaphidophoridae and Gryllacrididae) from Zhejiang Province, China. ZooKeys 1123: 147-171. https://doi.org/10.3897/zookeys.1123.86704
List of species of the family Tettigoniidae, Rhaphidophoridae, and Gryllacrididae in Zhejiang Province, China
Urbanus and Cosgrove et al Nature Communications (2023) - Fastq files for In Situ Barcoding experiments
<p>fastq files relating to in situ barcoding experiments. If you have any questions about these datasets please contact Leila Perie (leila.perie@curie.fr)</p>
Figure 3 in DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea: Palaemonidae)
Figure 3. (a) Log egg number vs log carapace length (CL) in Paratypton siebenrocki; (b) box plot showing the egg volume of early and late stage embryos.
Figure 1 in DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea: Palaemonidae)
Figure 1. Ex situ images of Paratypton siebenrocki (RMNH.Crus.D.54440): (A) ovigerous female and (B) male. Dwelling morphology of P. siebenrocki. (C) Dwelling in Acropora arabensis from Farasan Islands (Red Sea) with ventilation pores, host of the specimens shown in a and b; and (D) Acropora cf. verweyi fragment in REEFolution nursery in Kenya, arrow indicates dwelling. Photos (a, b) by Arthur Anker, (c) by Jessica Bouwmeester, (d) by Susanne Bähr.
Figure 2 in DNA barcoding, dwelling morphology, and fecundity of the gall-forming shrimp Paratypton siebenrocki Balss, 1914 (Caridea: Palaemonidae)
Figure 2. Phylogeny reconstruction based on 16S and COI mtDNA. Paratypton siebenrocki (in bold) does not show a clear clustering with Anapontonia or Metapontonia in this reduced dataset from Horká et al. (2016). Topology is based on Maximum Likelihood (ML) analyses, support values are ML (UFBoot) on the left and Bayesian Inference (BI) on the right. Only values ≥ 90 are shown; – represents a value below this threshold.
FIGURE 5 in First record of Archanara neurica (Hübner, 1808) from the Iberian Peninsula (Lepidoptera: Noctuidae) according to DNA barcoding and internal male genitalia
FIGURE 5. Neighbour-Joining tree (K2P; constructed with MEGA6; COI 5'> 600 bp) including 142 sequences of selected Archanara, Lenisa and Globia rooted with Denticucullus pygmina and Coenobia rufa as outgroups. The depth of each branch shows divergence between lineages. Bootstrap values> 50% are provided at major nodes. The scale bar represents 0.01 genetic difference.
FIGURE 3 in First record of Archanara neurica (Hübner, 1808) from the Iberian Peninsula (Lepidoptera: Noctuidae) according to DNA barcoding and internal male genitalia
FIGURE 3. Male and female genital structures of Archanara neurica. A. Aedeagus with everted vesica of one of the specimens of Archanara neurica collected in the saltmarshes of Adventus near Trebujena, Cádiz, Spain; B. Male genitalia of a specimen of Archanara neurica collected in Denmark (MF4954) as published in Noctuidae Europaeae, vol. 8 (thanks to L. and G. Ronkay and to Marianne Fibiger); C. Female genitalia of a specimen of Archanara neurica collected in Denmark (MF5007) as published in Noctuidae Europaeae, vol. 8 (thanks to L. and G. Ronkay and to Marianne Fibiger).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.