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3,878 results for “Molecular Data”
FIGURES 127–130 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 127–130. Neoperla africana, female genital situs with focus on spermathecal stalk (SSt; not to scale) in top row, and an egg from the same specimen in the bottom row. 127, D. R.Congo, Odzala Nat. Park (NEOP104); 128, D. R. Congo, Odzala Nat. Park, Mbdanza (NEOP105); 129, D.R.Congo, Kalengo stream (NEOP101); 130, D. R. Congo, Kivu area, Blambwe. All eggs to similar scales, the scales are 100µm long.
FIGURES 169–176 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 169–176. ♂♂ in the Neoperla pilulifera-complex. N. pilulifera n. sp.: 169, 170, abdominal tip, dorsal and lateral, semi-diagrammatic, tergites and hemitergite 10 labelled; 171, contracted, 172, everted penis; 173, distal half of penis tube and base of endophallus (holotype ♂): all from Bayanga. N. crustata n. sp.: 174, 175, ♂ from Mali, Niger at Bamako; by transparency of the slide mount the basal end of the distodorsal spine group seems to overlap with the far distally displaced basolateral spine group (encircled); 176, holotype from Guinea (NEOP073). 174 and 178 to the same, other figures not to scale. bbs, bare basal stretch; bl, basolateral, dd, distodorsal, dl, distolateral spines.
FIGURES 83–90 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 83–90. Neoperla didita (Enderlein) and N. juxtadidita n. sp.: N. didita: 83, spermathecal stalk of the female from Mamfe; 84, fragment of an egg from the lectotype; 85, egg of the specimen from Mamfe; 86, anchor pole of same, optical section and surface view combined (diagrammatic, from a photograph). N. juxtadidita: 87, genital situs of holotype female from Belinga; 88, spinules from inside the spermathecal stalk; 89, egg; 90, anchor pole with anchor. Scales are 100µm, 84, 85 to the same, others not to scale. a, anchor; c, collar; r, ridges on egg; sa, spermatheca; SSt, spermathecal stalk; V, vagina.
FIGURES 59–62. Neoperla pallidogigas n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 59–62. Neoperla pallidogigas n. sp., female holotype: 59, genital situs, diagrammatic; 60, egg; 61, detail of striae, the white arrow points at a micropyle, the black arrow indicates the faint longitudinal line on the costa; 62, detached operculum. Scales are 100µm. sa, spermatheca; SSt, spermathecal stalk; tc, transverse cells between operculum and striae; V, vagina.
FIGURES 143–149 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 143–149. Neoperla camerunensis (Enderlein), penes and everted endophalli: 143, from Makak, endophallus not completely everted (USNM_086); 144, 145, holotype of the synonymous N. haugi from Lambaréné, before and after artificial eversion of endophallus; 146, penis tip with protruding base of endophallus, specimen from Ghana, Ankasa Reserve (NEOP125). 147, Congo, Boma (Z19.035); 148, Ivory Coast, Cavally R.; 149, Ethiopia, Cojeb R. (NEOP123). Figs. 146–147 to the same scale, the others to a scale similar to Fig. 143. so, soft ventrobasal region of penis tube.
FIGURES 11–15 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 11–15. Males in the N. lujana-complex. N. costata n. sp.: 11, male tergites 7–10, dorsal view; 12, artificially everted penis. N. lujana Navás, artificially everted penes: 13, from Cameroon, Etambo R.; 14, from Bayanga (CAR). 15, N. serrula paratype from Ghana (NEOP009).
FIGURES 1–5 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 1–5. Neoperla transvaalensis (Enderlein) (1–3) and N. laticollis Klapálek (4, 5): 1, male tergites 7–10, dorsal and lateral views; 2, penis, dorsoventral; 3, artificially everted penis, the retractor apodemes (sclerotised knob) are on the dorsal side; 4, male tergites 7–10; 5, artificially everted penis. The scales are 100µm, other figures not to scale. bs, bare strip; ce, cercus; gp, gonopore; vlb, ventrolateral spine bands.
FIGURES 161–168. Neoperla amoena n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 161–168. Neoperla amoena n. sp.. ♂ holotype: 161–163, habitus and abdominal tip (not to scale; NEOP070); 164–166, penis, only 164 to scale; ♀ paratype from Bamako: 167, 168, genital situs and egg. Scales are 100µm. bbs, bare basal stretch; tf, transverse folds; sa, spermatheca; SSt, spermathecal stalk; V, vagina.
FIGURES 76–82. Neoperla duodeviginti n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 76–82. Neoperla duodeviginti n. sp.: 76–78, ♂ abdominal tip and contracted penis, specimen from Bui Camp, Ghana (not to scale, tergites and HT10 labeled; modified from Zwick, 1973b); 79, penis with everted endophallus, specimen from Ghana, river Mensu; 80, endophallus of holotype (NEOP048) from Cameroon; 81, 82, genital situs and egg, ♀ from Belefuanai. Scales are 100µm unless differently indicated. a, anchor; c, collar: od, oviduct; sa, spermatheca; SSt, spermathecal stalk; V, vagina.
FIGURES 135–142. Neoperla panafricana n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 135–142. Neoperla panafricana n. sp., male abdominal tip and penis with everted endophallus: 135–137, holotype from Mkozi R. NEOP158; 138, Guinea (no details); 139, Namibia, Kunene R.; 140, R. S. Afr., Legalameetse, NEOP154; 141, Ivory Coast, Férédougouba; 142, Senegal, Touba, NEOP131. The scale is 200µm, all penes to similar scales.
FIGURES 217–221. Neoperla sassandrae n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 217–221. Neoperla sassandrae n. sp., female genital situs and eggs. For better visibility of patterns on S8 the vagina was flipped back, or a safranin stain was applied. Scales are 200µm, 217–219 same scale, 221 not to scale. A, anchor; c, collar; lscl, lateral vaginal sclerite; sa, spermatheca; SSt, spermathecal stalk; su, sulcus.
FIGURES 154–160. Neoperla plicata n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 154–160. Neoperla plicata n. sp. and N. pirus n. sp.. N. plicata: 154, female from Makokou, genital situs, genitalia flipped back from S8 which is shown upside down; 155, egg of same; 156, diagrammatic section through anchor pole of same; 156 egg of ♀ from Odzala N. P.. N. pirus: 158, genital situs and egg of ♀ holotype, plus semitransparent detail of a second egg (NEOP064). Scales are 100µm. a, anchor; c, collar; cf, concertinated transverse folds; ls, lateral sclerite; sa, spermatheca; SSt, spermathecal stalk; V, vagina.
FIGURES 201–204. Neoperla brachyphallus n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 201–204. Neoperla brachyphallus n. sp., ♂ holotype: 201, 202, terminal tergites in dorsal and lateral views, semidiagrammatic, tergites and hemitergite 10 are labelled; 203, penis with everted endophallus; 204, distal part of endophallus, enlarged. Only 203 to scale.
FIGURE 222. Neoperla benti n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURE 222. Neoperla benti n. sp., holotype (NEOP159), genital situs and the only egg, not to scale od, oviduct; SSt, spermathecal stalk; V, vagina.
FIGURES 63–68. Neoperla angolana n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 63–68. Neoperla angolana n. sp.: 63, abdominal tip of ♂ paratype, dorsal, tergites numbered, not to scale; 64, partly everted penis; 65, endophallus of same. 66, genital situs of ♀ holotype, with enlarged detail, diagrammatic; 67, egg; 68, detail of chorion structure. Scales as indicated. ce, cercus; co, common oviduct; E, epiproct; sa, spermatheca; SSt, spermathecal stalk; V, vagina.
FIGURES 102–107. Neoperla erinaceus n in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 102–107. Neoperla erinaceus n. sp., ♂ holotype: 102, 103, tergites 7–10, not to scale; 104, penis with everted endophallus, a white arrow indicates the location of the detail in Fig. 105; 106, 107, endophalli of the paratypes. Scale lines are 100µm, penes to same scale. cb, convergent bands of teeth; dat, dorso-apical teeth; ep, epiproct; is, isolated sclerite. Lines connect corresponding areas on the endophalli.
FIGURES 209–212 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 209–212. Neoperla burgeoni Navás, everted penes: 209, ♂ from Ghana, modified from Zwick (1973), endophallus fully everted; 210, ♂ from Guinea, Simbareya, endophallus incompletely everted; 211, ♂ from Cameroon, Garua, the slender penis (base not shown, light safranin stain) with long, bare distal part of endophallus. FIGURE 212. Neoperla beta n. sp., holotype ♂ (Senegal, Gambia r. at Samédouta), everted penis (NEOP200). Figures 209–212 to similar scales.
FIGURES 213–214 in Revision of the African Neoperla Needham, 1905 (Plecoptera: Perlidae: Perlinae) based on morphological and molecular data
FIGURES 213–214. Neoperla burgeoni Navás: 213, ♀ genital situs, Central African Republic (NEOP213), the inset is the holotype of N. bredoana (stained with Safranin); 214, egg, Ghana 81, Banda-Nkwanta, 18–20.9.1965, lighttrap on savanna (Endr̂dy-Younga: 250). FIGURES 215–216. Neoperla beta n. sp. (Guinea, r. Milo at Kankan, slide Z16.26), female genital situs and egg. In Figs 213 and 215, the vagina was flipped back for better visibilty of S8. Situs and eggs to the same scales, respectively.
Supplementary Data for: "Molecular basis for bacterial N-glycosylation by a soluble HMW1C-like N-glycosyltransferase"
<p>This data set contains files related to the article "<strong>Molecular basis for bacterial <em>N</em>-glycosylation by a soluble HMW1C-like <em>N</em>-glycosyltransferase</strong>" by Beatriz Piniello, Javier Macías-León, Shun Miyazaki, Ana García-García, Ismael Compañón, Mattia Ghirardello, Víctor Taleb, Billy Veloz, Francisco Corzana, Atsushi Miyagawa, Carme Rovira and Ramón Hurtado-Guerrero.</p> <p>Description of the files:</p> <p><strong>Simulation data:</strong></p> <p>- <strong>classical_md_simulations.zip: </strong>includes the inputs and initial and final structures of the classical MD simulation of AaNGT in complex with UDP-Glc and peptide, for both Asn3 in amide and imidic acid form.</p> <p>- <strong>qmmm_simulations.zip</strong>: includes the inputs for equilibration and metadynamics, and the initial structure extracted from the classical MD. Other relevant structures included in the directories of the pertinent figures (see below). Also includes plots of the CVs for each of the metadynamics.</p> <p><strong>Data related to the figures in the manuscript (data from the plots is in the Source Data file included with the manuscript):</strong></p> <p><strong>- Figure_4.zip: </strong>PDB file of the structure shown.</p> <p>- <strong>Figure_5.zip</strong>: PDB files of the structures shown (MC, TS and P, (already uploaded in v1) and FES file.</p> <p>- <strong>Figure_S6.zip: </strong>PDB files of the structures shown (MC, TS and P).</p> <p>- <strong>Figure_S7.zip: </strong>PDB files of the structures shown (MC, TS and P) for both simulations, and their respective FES files.</p> <p>- <strong>Figure_S9.zip</strong>: PDB file of the structure shown (computational only). It is the same as the structure shown in <strong>Figure 8</strong>.</p> <p>- <strong>Figure_S11.zip</strong>: PDB file of the structure shown.</p> <p>- <strong>Table_S3.zip: </strong>Excel file with the data to obtain the table. TS is given as a single structure in the table and thus not included in the file.</p> <p> </p> <p>More data can be made available upon reasonable request.</p>
FIGURE 9 in Clarification of the diagnosis of the genus Loxosoma s.l. (Entoprocta; Loxosomatidae) based on morphological and molecular data
FIGURE 9. RaxML maximum likelihood phylogeny based on 28S rRNA partial gene sequences. Bootstrap support indicated above branches, values below 95% were removed. Rectangles highlight subgenera. Asterisks indicate the position of Loxosoma aripes n. comb..
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