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zenodo36/100

Stellar chromospheric activity spectral database of solar-type stars based on the LAMOST Low-Resolution Spectroscopic Survey(disused)

<p>A stellar chromospheric activity spectral database of solar-type stars is constructed based on the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) Low-Resolution Spectroscopic Survey (LRS). The database contains 1,330,654 high-quality LRS spectra of solar-type stars with <em>T</em><sub>eff</sub> ranging from 4800 K to 6800 K. We measure the mean fluxes at line cores of the Ca II H&amp;K lines using a 1 &Aring; rectangular bandpass as well as a 1.09 &Aring; full width at half maximum (FWHM) triangular bandpass, and the mean fluxes of two 20 &Aring; pseudo-continuum bands on the two sides of the lines. Three chromospheric activity indexes, <em>S</em><sub>rec</sub> using the rectangular bandpass, and <em>S</em><sub>tri</sub> and <em>S</em><sub>MWL</sub> using the triangular bandpass, are evaluated based on the measured fluxes. The uncertainties of all the obtained parameters are estimated. We also produce spectrum diagrams of Ca II H&amp;K lines for all the spectra in the database. This database with more than one million high-quality LAMOST LRS spectra and basal chromospheric activity parameters can be further used for investigating activity characteristics of solar-type stars and solar-stellar connection.</p> <p>&nbsp;</p> <p>The entity of the database is composed of (1) a catalog of spectral sample and activity parameters, and (2) a library of spectrum diagrams.</p> <p>(1) Catalog of Spectral Sample and Activity Parameters<br> CaIIHK_Sindex_LAMOST_DR7_LRS.csv</p> <p>(2) Library of Spectrum Diagrams<br> spectrum_diagrams_000-049.zip&nbsp; (46 subfolders)<br> spectrum_diagrams_050-099.zip&nbsp; (40 subfolders)<br> spectrum_diagrams_100-149.zip&nbsp; (47 subfolders)<br> spectrum_diagrams_150-199.zip&nbsp; (49 subfolders)<br> spectrum_diagrams_200-249.zip&nbsp; (47 subfolders)<br> spectrum_diagrams_250-299.zip&nbsp; (45 subfolders)<br> spectrum_diagrams_300-349.zip&nbsp; (41 subfolders)<br> spectrum_diagrams_350-399.zip&nbsp; (39 subfolders)<br> spectrum_diagrams_400-449.zip&nbsp; (45 subfolders)<br> spectrum_diagrams_450-499.zip&nbsp; (35 subfolders)<br> spectrum_diagrams_500-549.zip&nbsp; (27 subfolders)<br> spectrum_diagrams_550-599.zip&nbsp; (38 subfolders)<br> spectrum_diagrams_600-649.zip&nbsp; (32 subfolders)<br> spectrum_diagrams_650-699.zip&nbsp; (26 subfolders)<br> spectrum_diagrams_700-749.zip&nbsp; (28 subfolders)</p> <p>&nbsp;</p>

opencc-by-4.0May 2022View details →
zenodo36/100

Stellar chromospheric activity spectral database of solar-type stars based on the LAMOST Low-Resolution Spectroscopic Survey (disused)

<p>A stellar chromospheric activity spectral database of solar-type stars is constructed based on the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) Low-Resolution Spectroscopic Survey (LRS). The database contains 1,330,654 high-quality LRS spectra of solar-type stars with&nbsp;effective temperature ranging from 4800 K to 6800 K. We measure the mean fluxes at line cores of the Ca II H&amp;K lines using a 1 &Aring; rectangular bandpass as well as a 1.09 &Aring; full width at half maximum (FWHM) triangular bandpass, and the mean fluxes of two 20 &Aring; pseudo-continuum bands on the two sides of the lines. Three chromospheric activity indexes,&nbsp;<em>S</em><sub>rec</sub> based on the 1 &Aring; rectangular bandpass, and&nbsp;<em>S</em><sub>tri</sub>&nbsp;and&nbsp;<em>S</em><sub>MWL</sub> based on the 1.09 &Aring; FWHM triangular bandpass, are evaluated from the measured fluxes. The uncertainties of all the obtained parameters are estimated. We also produce spectrum diagrams of Ca II H&amp;K lines for all the spectra in the database. This database with more than one million high-quality LAMOST LRS spectra and basal chromospheric activity parameters can be further used for investigating activity characteristics of solar-type stars and solar-stellar connection.</p> <p>&nbsp;</p> <p>The entity of the database is composed of (1) a catalog of spectral sample and activity parameters, and (2) a library of spectrum diagrams.</p> <p>(1) Catalog of Spectral Sample and Activity Parameters<br> CaIIHK_Sindex_LAMOST_DR7_LRS.csv</p> <p>(2) Library of Spectrum Diagrams<br> spectrum_diagrams_000-049.zip&nbsp; (46 subfolders)<br> spectrum_diagrams_050-099.zip&nbsp; (40 subfolders)<br> spectrum_diagrams_100-149.zip&nbsp; (47 subfolders)<br> spectrum_diagrams_150-199.zip&nbsp; (49 subfolders)<br> spectrum_diagrams_200-249.zip&nbsp; (47 subfolders)<br> spectrum_diagrams_250-299.zip&nbsp; (45 subfolders)<br> spectrum_diagrams_300-349.zip&nbsp; (41 subfolders)<br> spectrum_diagrams_350-399.zip&nbsp; (39 subfolders)<br> spectrum_diagrams_400-449.zip&nbsp; (45 subfolders)<br> spectrum_diagrams_450-499.zip&nbsp; (35 subfolders)<br> spectrum_diagrams_500-549.zip&nbsp; (27 subfolders)<br> spectrum_diagrams_550-599.zip&nbsp; (38 subfolders)<br> spectrum_diagrams_600-649.zip&nbsp; (32 subfolders)<br> spectrum_diagrams_650-699.zip&nbsp; (26 subfolders)<br> spectrum_diagrams_700-749.zip&nbsp; (28 subfolders)</p>

opencc-by-4.0May 2022View details →
zenodo36/100

Stellar chromospheric activity spectral database of solar-type stars based on the LAMOST Low-Resolution Spectroscopic Survey(disused)

<p>A stellar chromospheric activity spectral database of solar-type stars is constructed based on the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) Low-Resolution Spectroscopic Survey (LRS). The database contains 1,330,654 high-quality LRS spectra of solar-type stars with&nbsp;effective temperature ranging from 4800 K to 6800 K. We measure the mean fluxes at line cores of the Ca II H&amp;K lines using a 1 &Aring; rectangular bandpass as well as a 1.09 &Aring; full width at half maximum (FWHM) triangular bandpass, and the mean fluxes of two 20 &Aring; pseudo-continuum bands on the two sides of the lines. Three chromospheric activity indexes,&nbsp;<em>S</em><sub>rec</sub> based on the 1 &Aring; rectangular bandpass, and&nbsp;<em>S</em><sub>tri</sub>&nbsp;and&nbsp;<em>S</em><sub>MWL</sub> based on the 1.09 &Aring; FWHM triangular bandpass, are evaluated from the measured fluxes. The uncertainties of all the obtained parameters are estimated. We also produce spectrum diagrams of Ca II H&amp;K lines for all the spectra in the database. This database with more than one million high-quality LAMOST LRS spectra and basal chromospheric activity parameters can be further used for investigating activity characteristics of solar-type stars and solar-stellar connection.</p> <p>&nbsp;</p> <p>The entity of the database is composed of (1) a catalog of spectral sample and activity parameters, and (2) a library of spectrum diagrams.</p> <p>(1) Catalog of Spectral Sample and Activity Parameters<br> CaIIHK_Sindex_LAMOST_DR7_LRS.csv</p> <p>(2) Library of Spectrum Diagrams<br> spectrum_diagrams_000-049.zip&nbsp; (46 subfolders)<br> spectrum_diagrams_050-099.zip&nbsp; (40 subfolders)<br> spectrum_diagrams_100-149.zip&nbsp; (47 subfolders)<br> spectrum_diagrams_150-199.zip&nbsp; (49 subfolders)<br> spectrum_diagrams_200-249.zip&nbsp; (47 subfolders)<br> spectrum_diagrams_250-299.zip&nbsp; (45 subfolders)<br> spectrum_diagrams_300-349.zip&nbsp; (41 subfolders)<br> spectrum_diagrams_350-399.zip&nbsp; (39 subfolders)<br> spectrum_diagrams_400-449.zip&nbsp; (45 subfolders)<br> spectrum_diagrams_450-499.zip&nbsp; (35 subfolders)<br> spectrum_diagrams_500-549.zip&nbsp; (27 subfolders)<br> spectrum_diagrams_550-599.zip&nbsp; (38 subfolders)<br> spectrum_diagrams_600-649.zip&nbsp; (32 subfolders)<br> spectrum_diagrams_650-699.zip&nbsp; (26 subfolders)<br> spectrum_diagrams_700-749.zip&nbsp; (28 subfolders)</p>

opencc-by-4.0May 2022View details →
zenodo36/100

Data for 'Y2Ti2O5S2 – a promising n-type oxysulphide for thermoelectric applications'

<p>The optimised Y2Ti2O5S2 structures used in the calculations, the AMSET inputs and outputs, including both n- and p-type transport data, and lattice thermal conductivity data.</p>

opencc-by-4.0May 2022View details →
zenodo36/100

The formation of the stripped envelope type IIb Supernova progenitors: Rotation, Metallicity and Overshooting

<p>The&nbsp;&nbsp;inlist files&nbsp; for the paper &quot;The formation of the stripped envelope type IIb Supernova progenitors: Rotation, Metallicity and Overshooting&quot;; All models are calculated with the MESA(r10398) code&nbsp; .</p>

opencc-by-4.0May 2022View details →
zenodo36/100

Type IIP Supernova Progenitors. III. Blue to Red Supergiant Ratio in Low-metallicity Models with Convective Overshoot (Dataset)

<p>MESA input and output files associated with the published journal article Wagle et al. (2020; doi:10.3847/1538-4357/ab8bd5). We used MESA version r-10398 and MESA SDK version 20180822 to run these models.</p> <p>The &quot;MESA_inputs.tar.gz&quot; file contains work directories for initial mass of 13 solar mass and several overshoot parameter (f) values as listed in Table 2 of the published article. The models can be run directly from each working directory (&quot;f_*&quot;) by making (./mk) and then running MESA (./rn), after instantiating MESA SDK. The run-script (&quot;rn&quot;) is modified to start a MESA run from the pre-main-sequence (preMS) stage through core-collapse (CC) stage, if the LOGS and photos directories are absent. Otherwise, it restarts MESA from the latest &quot;photo&quot; binary file saved in the photos directory (that is, it assumes that the previous run was interrupted and restarts the run. So, to start a fresh run delete the &quot;LOGS&quot; and &quot;photos&quot; directories.) Each working directory has &quot;run_star_extras.f&quot; file which is modified to save the compactness parameters, mu_4, M_4 as extra history columns, as well as, to implement additional temporal resolution constraints as explained in section 2.2 of the article. Any other combination of mass and f-value from Table 2 of the article can be run by changing initial_mass in &quot;inlist_control&quot; file, and overshoot values in &quot;inlist_f*&quot; file.</p> <p>Each &quot;*M_z0.006_f_*.tar.xz&quot; file has a &quot;LOGS&quot; directory that contains corresponding &quot;history.data&quot;, &quot;profile.data&quot; at core-collapse (CC) stage and saved model (&quot;*.mod&quot;) at CC stage for each mass and f-value combination from Table 2 of the paper. (Note: Please copy the tar.xz files for each mass in a separate folder before decompressing them, in order to avoid overwriting the folders with the same f-values.) The LOGS directory also contains a folder &quot;png_plots&quot; that has saved &quot;.png&quot; files generated by &quot;inlist_pgstar&quot;. These files can be used to generate stellar evolution movies using the &quot;images_to_movie.sh&quot; script available in the MESA SDK.</p> <p>&nbsp;</p>

opencc-by-4.0May 2020View details →
dryad36/100

Ecological data on evergreen forest types of central plains Cambodia

<p>Four different lowland evergreen forest types, each with a unique species composition and ecological characteristics is described from the central plains, Cambodia. Through six botanical expeditions, we collected data on the forest types using 50x10 = 500 sqm strip sample plots (n=119); i) riverine forest dominated by Dipterocarpus costatus (Dipterocarpaceae): ii) tall dipterocarp forest dominated by Anisoptera costata (Dipterocarpaceae); iii) swamp forest dominated by Macaranga triloba (Euphorbiaceae); and iv) "Sralao" forest with a monodominance of Lagerstroemia cochinchinensis (Lythraceae). This dataset includes i) a matrix showing the occurrence of different species within the 119 sample plots, ii) a summary of forest structure and diversity index values for the 119 individual sample plots, iii) a summary for individual species within forest types of mean, standard error and coefficient of variation of the mean for diameter, density, basal area and frequency, as well as relative density, dominance and frequency and importance value index (IVI), iv) a summary of forest structure variables for diameter classes and forest types. The dataset was analyzed and used to characterize and compare the four evergreen forest types in the publication: Theilade et al. 2022. Evergreen forest types of the central plains in Cambodia: floristic composition and ecological characteristics; published in Nordic Journal of Botany. <a href="https://doi.org/10.1111/njb.03494" rel="noopener">https://doi.org/10.1111/njb.03494</a></p>

opencc-zeroJun 2022View details →
dryad36/100

A gene variation at the ZPR1 locus (rs964184) interacts with the type of diet to modulate postprandial triglycerides in patients with coronary artery disease: From the Cordioprev Study

<p>Background and Aims: rs964184 variant in the ZPR1 gene has been associated with blood lipids levels both in fasting and postprandial state and with the risk of myocardial<br>infarction in high-risk cardiovascular patients. However, whether this association is modulated by diet has not been studied.</p> <p>Objective: To investigate whether the type of diet (low-fat or Mediterranean diets) interacts with genetic variability at this loci to modulate fasting and postprandial lipids in<br>coronary patients.</p> <p>Materials and Methods: The genotype of the rs964184 polymorphism was determined in the Cordioprev Study population (NCT00924937). Fasting and Postprandial triglycerides were assessed before and after 3 years of dietary intervention with either a Mediterranean or a low-fat diet. Postprandial lipid assessment was done by a 4-h oral fat tolerance test (OFTT). Differences in triglycerides levels were identified using repeated-measures ANCOVA.</p> <p>Results: From 523 patients (85% males, mean age 59 years) that completed the OFTT at baseline and after 3 years of intervention and had complete genotype information, 125<br>of them were carriers of the risk allele G. At the start of the study, these patients showed a higher fasting and postprandial triglycerides (TG) plasma levels. After 3 years of dietary<br>intervention, G-carriers following a Mediterranean Diet maintained higher fasting and postprandial triglycerides, while those on the low-fat diet reduced their postprandial<br>triglycerides to similar values to the population without the G-allele.</p> <p>Conclusion: After 3 years of dietary intervention, the altered postprandial triglyceride response induced by genetic variability in the rs964184 polymorphism of the ZPR1 gene<br>can be modulated by a low-fat diet, better than by a Mediterranean diet, in patients with coronary artery disease.</p>

opencc-zeroJun 2022View details →
zenodo36/100

Modeling Crash Severity and Collision Types Using Machine Learning

<p>Traffic safety analysis is the fundamental step for reducing economic, social, and environmental cost incurred due to traffic accidents. The essence of traffic safety is understanding the factors affecting crash occurrence, injury severity and collision type and their underlying relationships and predict-prevent future crash instances. Crash injury severity studies in past have utilized numerous statistical, econometric and Machine Learning (ML) and Artificial Intelligence (AI) tools to extract the underlying relationship between the crash causal factors and the consequent severity or collision type. The study aims to explore the Multi-Label Classification (MLC) tool from the domain of Artificial Intelligence (AI) for classification problems in the setting of traffic safety. MLC finds its application primarily in protein function, semantic scene, and music categorization problems. In the real world, multiple heterogenous subjective factors decide the extent of damage/severity of a particular crash instance. Theoretically, the traffic collision type and crash severity type can be correlated, and thus, it is intuitive to model them simultaneously. The ability of MLC to categorize an entity under analysis to more than one labels, correlated or uncorrelated, provides the approach an edge over the single-class (binary) or multi-class classification approach. The MLC based classification model was calibrated and tested using the historical crash data extracted for the state of Texas. The selection of study area was based on a link-level unsupervised principal component analysis-based clustering approach. Similar clustering approach was also tested at the county-level to understand the spatial behavior and thus transferability of the MLC approach to other key cities in the state. The performance of the proposed approach was tested, compared, and quantified with the conventional binary/multi-class classification tools used in the traffic safety domain. Inferences from the preliminary numerical analysis indicates that the proposed multi-label classification approach has promising performance compared to the traditional classification approaches, specifically found in traffic safety literatures.</p>

opencc-by-4.0Dec 2021View details →
dryad36/100

Data from: Grassland type and seasonal effects have a bigger influence on plant functional and taxonomical diversity than prairie dog disturbances in semi-arid grasslands

<p>Prairie dogs (Cynomys sp.) are considered keystone species and ecosystem engineers for their grazing and burrowing activities (summarized here as disturbances). As climate changes and its variability increases, the mechanisms underlying organisms' interactions with their habitat will likely shift. Understanding the mediating role of prairie dog disturbance on vegetation structure, and its interaction with environmental conditions through time, will increase knowledge on the risks and vulnerability of grasslands. Here, we compared how plant taxonomical diversity, functional diversity metrics and community-weighted trait means (CWM) respond to prairie dog C. mexicanus disturbance across grassland types and seasons (dry and wet) in a priority conservation semiarid grassland of Northeast Mexico. Our findings suggest that functional metrics and CWM analyses responded to interactions between prairie dog disturbance, grassland type and season, whilst species diversity and cover measures were less sensitive to the role of prairie dog disturbance. We found weak evidence that prairie dog disturbance has a negative effect on vegetation structure, except for minimal effects on C4 and graminoid cover, but which depended mainly on season. Grassland type and season explained most of the effects on plant functional and taxonomic diversity as well as CWM traits. Furthermore, we found that leaf area as well as forb and annual cover increased during the wet season, independent of prairie dog disturbance. Our results provide evidence that grassland type and season have a stronger effect than prairie dog disturbance on the vegetation of this short-grass, water restricted grassland ecosystem. We argue that focusing solely on disturbance and grazing effects is misleading, and attention is needed on the relationships between vegetation and environmental conditions which will be critical to understand semi-arid grassland dynamics under future climate change conditions in the region. </p>

opencc-zeroJun 2022View details →
zenodo36/100

Data supporting On the step type of continuous propagating positive leader in laboratory-scale long spark discharges

<p>The data supports the manuscript entitled &quot;On the step type of continuous propagating positive leader in laboratory-scale long spark discharges&quot;. The *.txt&nbsp;file contains the applied voltage waveform and discharge current waveform. The*.doc file contains the&nbsp; data for Figure 5. The *.rar file contains the high-speed video frames, and can be decompressed and opened. The data can be used freely for scientific purposes with appropriate citation.</p>

opencc-by-4.0Jun 2022View details →
dryad36/100

Data from: A genome-wide functional genomics approach uncovers genetic determinants of immune phenotypes in type 1 diabetes

<p><strong>Background: </strong>The large inter-individual variability in immune-cell cell composition and function determines immune responses in general and susceptibility to immune-mediated diseases in particular. While much has been learned about the genetic variants relevant for type 1 diabetes (T1D), the pathophysiological mechanisms through which these variations exert their effects remain unknown.</p> <p><strong>Methods:</strong> Blood samples were collected from 243 patients with T1D of Dutch descent. We applied genetic association analysis on &gt; 200 immune cell traits and &gt;100 cytokine production profiles in response to stimuli measured to identify genetic determinants of immune function, and compared the results obtained in T1D to healthy controls.</p> <p><strong>Results:</strong> Genetic variants that determine susceptibility to T1D significantly affect T cell composition. Specifically, the CCR5+ regulatory T cells associate with T1D through the CCR region, suggesting a shared genetic regulation. Genome-wide quantitative trait loci (QTL) mapping analysis of immune traits revealed 15 genetic loci that influence immune responses in T1D, including 12 that have never been reported in healthy population studies, implying a disease-specific genetic regulation.</p> <p><strong>Conclusion:</strong> This study provides new insights into the genetic factors that affect immunological responses in T1D.</p>

opencc-zeroDec 2021View details →
zenodo36/100

Bacterial-Type Long-Chain Polyphosphates Bind Human Proteins in the Phosphatidylinositol Signaling Pathway

<p>This dataset consists of 2 tabs.<br> Tab 1: Processed full data<br> This contains the full array data (all proteins), with brightest signals sorted to the top. The data was filtered according to the criteria laid out in the report (see column headers, cells formatted in red if criteria not met).<br> The right side of the table displays the raw data of the duplicate spots on the sample array (incubated with polyP-bio + Strept-532) and the control array (incubated with Strept-532 only).&nbsp; &quot;</p> <p>Tab 2: Histone Controls<br> This contains the individual fluorescence values for the histone control spots (which are repeated in duplicate on each of the 48 subarrays, i.e. 96 values total), as well as their averages, side by side for sample and control array.</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2022View details →
zenodo36/100

Dataset for: Conformational and Thermodynamic Differences Underlying Wild-type and Mutant YEATS Domain Specificity for Epigenetic Marks

<p>The set of molecular dynamics trajectories generated and analyzed in the paper &quot;Conformational and Thermodynamic Differences Underlying Wild-type and Mutant YEATS Domain Specificity for Epigenetic Marks.&quot; &nbsp;<strong>Citations should refer directly to the manuscript.&nbsp;</strong>&nbsp;The preprint version is available at:&nbsp;https://doi.org/10.1101/2022.07.14.500085</p> <p>The uploaded zip file &quot;trajectory_data.zip&quot; contains trajectories for the (1) apo&nbsp;(2) h3k27ac and (3) h3k9ac systems. &nbsp;In each directory is a subdirectory corresponding to the wild-type, deletion, and insertion mutations. &nbsp;In each of those subdirectories are 10 XTC files, which correspond to the trajectories for the 10 different simulations performed for each system, along with an AMBER-formated PRMTOP file. Solvent molecules were removed from each file, and trajectories were strided such that there is one frame per 500 ps.&nbsp;</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

Difference between finger prints of type 2 diabetics and healthy individuals

<p>This dataset provides the fingerprint patterns of type 2 diabetic and non-diabetic patients. Careful inclusion and exclusion criteria were used to select participants so that their fingerprints could be compared for research purposes.</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

A computational study of the structure and function of human Zrt and Irt-like proteins metal transporters: An elevator-type transport mechanism predicted by AlphaFold2

<p>Data produced and analyzed in the manuscript &quot;A computational study of the structure and function of human Zrt and Irt-like proteins metal transporters: An elevator-type transport mechanism predicted by AlphaFold2&quot; by Pasquadibisceglie et al.</p> <p><br> If you include these data in your manuscript, please cite: Pasquadibisceglie A, Leccese A and Polticelli F (2022) A computational study of the structure and function of human Zrt and Irt-like proteins metal transporters: An elevator-type transport mechanism predicted by AlphaFold2. <em>Front. Chem.</em> 10:1004815. doi: 10.3389/fchem.2022.1004815</p>

opencc-by-4.0Jul 2022View details →
dryad36/100

Different types of semi-natural habitat are required to sustain diverse wild bee communities across agricultural landscapes

<p><span>1. Semi-natural habitats provide important resources for wild bees in agricultural landscapes. Landscapes under management are dynamic and floral resources fluctuate in space and time. Thus, promoting different semi-natural habitat types within landscapes could be key to support diverse bee meta-communities throughout the season.</span></p> <p><span>2. Here, we integrate analyses of </span><span>a</span><span>-diversity (species richness) and </span><span>b</span><span>-diversity and species-habitat networks to examine the relative contribution of all major semi-natural habitats to wild bee meta-communities in agricultural landscapes. We sampled extensively and conventionally managed meadows, flower strips, hedgerows and forest edges in spring, early and late summer in 25 landscapes in Switzerland. </span></p> <p><span>3. Habitat types varied in their importance for wild bees throughout the season: While extensively managed meadows supported more rare species, habitat specialists and bee species overall than the other habitat types, flower strips were most important later in the season. Each of the five investigated habitat types harboured relatively unique sets of species with different habitats generally acting as distinct modules in the overall bee-habitat network. </span></p> <p><span>4. Not only flower richness in a habitat per se, but also flower-habitat network properties (habitat strength and functional complementarity) were good predictors of wild bee richness. In addition to local floral richness, landscape composition and configuration interactively influenced </span><span>b</span><span>-diversity patterns across habitats.</span></p> <p><span>5. Synthesis and applications</span><span>. Our study highlights the value of pollinator-habitat network analysis to inform pollinator conservation management at the landscape scale, especially when combined with information on floral resources and flower-habitat networks. Maintaining different types of semi-natural habitats offers diverse and complementary resources throughout the season, which are crucial to sustain diverse wild bee meta-communities in agricultural landscapes. Particularly meadow extensification schemes can play a key role in safeguarding rare and specialist species in these landscapes. While locally a high flower richness promoted bee abundance and richness in general, our results indicate that increasing connectivity between habitat patches in landscapes dominated by arable crops appears to improve species exchange between local bee communities of different habitats, thereby possibly increasing their resilience to disturbances.</span></p>

opencc-zeroJul 2022View details →
zenodo36/100

Data collected by citizen scientists reveal the role of climate and phylogeny on the frequency of shelter types used by frogs across the Americas

<p><strong>Supplementary Material </strong>&nbsp;of the manuscript on frog shelters across americas. Raw data and figures.</p> <p><strong>Table S1.</strong> The number of all anuran observations per species per country in the iNaturalist dataset on July 1, 2021.</p> <p><strong>Table S2.</strong> Distribution of shelter types among frog species retrieved from the iNaturalist platform across the Americas. Species with shelter first time reports are marked with *, shelter types are: AH = Holes in an artificial material; AS = Artificial surface; HG = Hole in the ground; HR = Among rocks; VBa = Hollow in bamboo; VBr = Bromelias or bromelia-like plants; VL = Live vegetation; VT = Tree trunk; VD = Leaf litter; WA = Water</p> <p><strong>Table S3.</strong> Anuran shelter sites around the world based on our literature review. *indicates the reference is secondary literature</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

Rotational electron diffraction patterns of TIA-1 prion-like domain, wild type

<p>Rotational electron diffraction patterns of TIA-1 prion-like domain, wild type. Collected with a JEOL CRYO ARM 300 electron microscope operated at an accelerating voltage of 300kV on a DirectElectron DE64 detector at RIKEN, SPring-8 Center. The PDB ID associated with this data is 7VI5.</p>

opencc-by-4.0Aug 2022View details →
zenodo36/100

The effects of Covid-19 lockdown on health, lifestyle, and wellbeing of children with Type 1 diabetes and their parents in Kuwait

<p>This is a full data set to accompany our study, presently in submission.</p> <p>Abstract</p> <p><strong><em>Objective.</em></strong> The restrictions brought about by Covid-19 pandemic have substantially affected people&rsquo;s health and rapidly changed their daily routines. This is a prospective study that investigated the impact of the pandemic on primary school children with Type 1 diabetes and their parents during the first lockdown in Kuwait.</p> <p><strong><em>Methods.</em></strong> A questionnaire battery related to mental health, well-being, and lifestyle was administered at baseline in Summer 2019 (face-to-face, at a diabetes outpatient clinic) and at follow-up during lockdown in Summer 2020 (via telephone, in adherence with Covid-19 restrictions). Data were collected for 70 dyads with children aged 9-12 years.</p> <p><strong><em>Results.</em></strong> Significant differences were found in most scores for both children and parents. Their mental health worsened to a higher level of depression, anxiety, stress, and a poor level of wellbeing. The average scores on the follow-up tests fell within a clinical range on these measures. Significant differences in their lifestyle, compared to before the lockdown, included decreased levels of physical activity and lower healthy core nutritional intake.</p> <p><strong><em>Conclusions.</em></strong> Our findings indicate that the Covid-19 lockdown has had a significant psychological and possibly physiological impact on children with Type 1 diabetes and their parents. We conclude that there is a need for mental health support services focusing on these groups. Although full lockdown restrictions will have stopped in the past year, post-pandemic stressors may be expected to continue to adversely affect this cohort.&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Aug 2022View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.