Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
250
datasets available to search
ShareScore release 0.9.0
Dataset results
250 results for “3D analysis”
Systematic analysis of circadian gene expression mediated by epigenetic modification and 3D genome organization in Rice [ChIP-Seq]
GEO Series GSE213226. Oryza sativa Indica Group. 37 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of 3D Chromatin Structure in Chondrocytes Identifies Putative OA Risk Genes
GEO Series GSE200345. Homo sapiens. 8 samples. Type: Other.
Integrative 3D Genomics with Multi-Omics Analysis and Functional Validation of Genetic Regulatory Mechanisms of Abdominal Fat Deposition in Chickens (Hi-C).
GEO Series GSE260559. Gallus. 6 samples. Type: Other.
Obtention of viable cell suspensions from breast cancer tumor biopsies for 3D chromatin conformation and single cell transcriptome analysis [Hi-C]
GEO Series GSE264646. Homo sapiens. 1 samples. Type: Other.
Genome-wide analysis of gene regulatory networks in chickens reveals dynamic temporal changes in retinal signaling cascade underlying compensation to lens-imposed optical defocus [3d]
GEO Series GSE203585. Gallus gallus. 14 samples. Type: Expression profiling by high throughput sequencing.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissue [mouse_brain_bulk_HiCAR]
GEO Series GSE267118. Mus musculus. 9 samples. Type: Other.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [mouse_brain_scHiCAR_2]
GEO Series GSE267126. Mus musculus. 80 samples. Type: Expression profiling by high throughput sequencing; Other.
Polymer-mediated oligo delivery enables construction of spatially encoded 3D cultures for analysis by single-cell RNA sequencing
GEO Series GSE245416. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Analysis of 3D human airway epithelial cultures by single-cell RNA-seq
GEO Series GSE166601. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [cellline_scHiCAR]
GEO Series GSE267117. Homo sapiens; Mus musculus. 34 samples. Type: Other.
Transcriptome Analysis with Human Vascular smooth muscle cells under 2D and 3D cell culture conditions
GEO Series GSE192986. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Analysis transcriptome differences of 3D-cultured HUVECs upon overexpressing KANK4 or Vector.
GEO Series GSE182578. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [mouse_brain_scHiCAR_1]
GEO Series GSE305439. Mus musculus. 4 samples. Type: Other.
Single-Cell RNA Sequencing Analysis of Kidney Organoids derived in 2D or 3D from SCTi004-A hiPSC line using the STEMdiff™ Kidney Organoid Kit
GEO Series GSE312980. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Whole transcriptome analysis reveals ELK3 as a key driver of metastasis through regulation of 3D migration and stemness in triple-negative breast cancer cells
GEO Series GSE302063. Homo sapiens. 8 samples. Type: Expression profiling by array.
RNA-seq analysis of 2D- and 3D-cultured pancreatic cancer cells
GEO Series GSE198192. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of the transcriptomes of RAW264.7 cell in 3D and 2D culture
GEO Series GSE186841. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
High-resolution Comparative Analysis Reveals a Primitive 3D Genome in Embryonic Stem Cells
GEO Series GSE85977. Homo sapiens. 4 samples. Type: Other; Third-party reanalysis.
scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [mouse_skeletal_muscle_scHiCAR]
GEO Series GSE304674. Mus musculus. 50 samples. Type: Other.
Temporal transcriptomic analysis of human pancreatic exocrine cells in 3D suspension culture
GEO Series GSE154635. Homo sapiens. 13 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.