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Figure 12 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 12. SEM micrographs of jaws in Coryphella gracilis and Coryphella amabilis (former Microchlamylla). A, Coryphella gracilis, right jaw plate, ZMMU WS14915. B, Coryphella gracilis, details of denticulation on masticatory process, ZMMU WS14915. C, Coryphella amabilis, ZMMU WS14960, left jaw plate. D, Coryphella amabilis, ZMMU WS14960, details of denticulation on masticatory process. E, Coryphella amabilis, ZMMU WS14966, right jaw plate. F, Coryphella amabilis, ZMMU WS14966, details of denticulation on masticatory process. Scale bars: A, C, E = 100 µm, B, F = 30 µm, D = 10 µm.

Figure 13 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 13. Living specimens of the species Coryphella nobilis (former Borealea nobilis). A, voucher not specified, 38 mm in length alive. B, ZMMU WS14443, 26 mm in length preserved. C, juvenile, WS14379, 9 mm in length preserved. D, juvenile, ZMMU WS14934, 13 mm in length alive. E, subadult, ZMMU WS14935, 19 mm in length alive. F, MIMB40022, 19 mm in length preserved. Photo credits: A, C, Sergey Gorin; B, Tatiana Antokhina; D, E, Irina Ekimova; F, Anastassya Mayorova.

Figure 10 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 10. Living specimens of Coryphella amabilis (former Microchlamylla amabilis). A, ZMMU WS14990, c. 18 mm in length. B, ZMMU WS14960, c. 15 mm in length. C, ZMMU WS14961, c. 14 mm in length. D, ZMMU WS14957, c. 16 mm in length. E, ZMMU WS14997, c. 7 mm in length. F, ZMMU WS14993, c. 10 mm in length. G, subadult specimen, Sea of Japan, voucher was not specified. H, ZMMU WS14996, c. 15 mm in length. I, juvenile specimen, Sea of Japan, voucher was not specified. Photo credits: A–F, H, Tatiana Antokhina; G, I, Anton Chichvarkhin.

Figure 1 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 1. Phylogenetic hypotheses of Flabellinoidea s.l. based on the concatenated dataset. A, Maximum likelihood, numbers above branches indicate bootstrap values (> 60). B, Bayesian inference, numbers above branches indicate posterior probabilities (> 0.9). Species-level clades and outgroups are collapsed.

Figure 7 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 7. SEM micrographs of jaws in Coryphella verrucosa. A, left jaw plate, ZMMU WS14923, Haplogroup A. B, details of denticulation on masticatory process, ZMMU WS14923, Haplogroup A. C, right jaw plate, ZMMU WS14439, Haplogroup C. D, details of denticulation on masticatory process, ZMMU WS14439, Haplogroup C. E, details of denticulation on masticatory process, ZMMU WS14382, Haplogroup A. F, details of denticulation on masticatory process, ZMMU WS14440, Haplogroup B. Scale bars: A, C = 300 µm, B, D = 30 µm, E = 100 µm, F = 10 µm.

Figure 4 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 4. Living specimens of Coryphella verrucosa, Haplogroup A. A, 'verrucosa' morphotype, ZMBN126020, c. 25 mm in length. B, 'verrucosa' morphotype, ZMBN125092, c. 35 mm in length. C, 'verrucosa' morphotype, ZMMU WS14928, 18 mm in length preserved. D, 'intermediate' morphotype, ZMMU WS14927, 21 mm in length preserved. E, 'rufibranchialis' morphotype, ZMMU WS14912, 14 mm in length preserved. F, 'rufibranchialis' morphotype, ZMBN125543, c. 25 mm in length. G, 'rufibranchialis' morphotype, ZMMU WS14397, 15 mm in length preserved. H, 'rufibranchialis' morphotype, ZMBN127572, c. 25 mm in length. I, juvenile, ZMBN125893, c. 6 mm in length. J, Coryphella verrucosa in natural environment, 'verrucosa' morphotype, ZMBN125618. K, Coryphella verrucosa in natural environment, 'intermediate' morphotype, ZMBN127490. Photo credits: A, Viktor V. Grøtan; B, F, H, I, K, Anders Schouw; C, D, E, G, Tatiana Antokhina; J, Nils Aukan.

Figure 9 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 9. Living specimens of Coryphella gracilis (former Microchlamylla gracilis). A, ZMBN127842, no measurements taken. B, ZMBN125110, c. 15 mm in length. C, ZMBN125576, c. 8 mm in length. D, ZMMU WS14914, 14 mm in length preserved. E, voucher not specified, 11 mm in length. F, ZMMU WS14930, 9 mm in length. G, juvenile, ZMMU WS14929, 4 mm in length preserved. Photo credits: A, C, Heine Jensen; B, Anders Schouw; D, Tatiana Antokhina; E–G, Irina Ekimova.

Figure 2 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 2. Part of the maximum likelihood-based phylogenetic tree of Flabellinoidea s.l., showing relationships within the family Coryphellidae. Each branch is coloured according to the primary species hypothesis sensu Korshunova et al. (2017a) and provided on the left. Revised identifications representing the result of the present study are provided on the right. Numbers above branches indicate the bootstrap values (for BS> 60). Blocks on the right indicate species delimitation results: coloured blocks refer to groups matching the initial species hypothesis, grey blocks indicate results when the initial species hypothesis is not supported by a delimitation method. Abbreviations: JC, Jukes–Cantor model; K80, Kimura 2-parameter model; SD, Simple distances.

Figure 3 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 3. COI haplotype networks of trans-Arctic species within the family Coryphellidae produced with TCS method in PopART. A, Coryphella verrucosa. Red stars indicate haplotypes comprising the type specimens of Coryphella pseudoverrucosa. Blue stars indicate haplotypes comprising 'verrucosa' form of Coryphella verrucosa. The rest of the haplotypes are represented only by specimens of the 'rufibranchialis' morphotype. B, Coryphella amabilis and Coryphella gracilis (former genus Microchlamylla). C, Coryphella nobilis and Coryphella sanamyanae (former genus Borealea). Colours of circles refer to the geographic origin of each haplotype. The relative size of circles is proportional to the number of sequences of that same haplotype. Coloured background indicates the initial species hypothesis. H.A, H.B and H.C. refer to Haplogroup A, Haplogroup B and Haplogroup C, respectively.

Figure 8 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 8. Reproductive system of target species. A, Coryphella verrucosa, ZMMU WS14479, Haplogroup A. B, Coryphella verrucosa, ZMMU WS14398, Haplogroup C. C, Borealea nobilis, ZMMU WS14443. D, Coryphella sanamyanae, ZMMU WS14416. E, Coryphella gracilis, ZMMU WS14914. F, Coryphella gracilis, ZMMU WS14418. Abbreviations: amp, ampulla; fgm, female gland mass; dsr, distal receptaculum seminis; psr, proximal receptaculum seminis (= 'bursa copulatrix'); ps, penial sheath; pvd, prostatic vas deferens. Scale bars: A–D = 1 mm; E, F = 500 µm.

Figure 5 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 5. Living specimens of Coryphella verrucosa, Haplogroups B and C (former Coryphella pseudoverrucosa). A, ZMMU WS14972, Haplogroup B, 27 mm in length. B, ZMMU WS14967, Haplogroup B, 25 mm in length. C, ZMMU WS14951, Haplogroup B, 22 mm in length. D, ZMMU WS14968, Haplogroup B, 17 mm length. E, ZMMU WS14970, Haplogroup B, 17 mm in length. F, ZMMU WS14971, Haplogroup B, 12 mm in length. G, MIMB40024, Haplogroup B, 10 mm in length. H, MIMB40025, Haplogroup C, 21 mm in length preserved. I, Coryphella verrucosa in natural environment, ZMMU WS14421 and ZMMU WS14422, Haplogroup C. J, Coryphella verrucosa in natural environment, ZMMU WS14439 and ZMMU WS14440, Haplogroups C and B, respectively. Photo credits: A–F, Tatiana Antokhina; G, H, Anastassya Mayorova; I, J, Anton Chichvarkhin.

Figure 6 in High-level taxonomic splitting in allopatric taxa causes confusion downstream: a revision of the nudibranch family Сoryphellidae

Figure 6. SEM micrographs of middle radular portion in Coryphella verrucosa. A, ZMMU WS14451, Haplogroup A. B, ZMMU WS14484, Haplogroup A. C, ZMMU WS14504, Haplogroup A. D, ZMMU WS14404, Haplogroup B. E, ZMMU WS14413, Haplogroup B. F, ZMMU WS14402, Haplogroup B. G,ZMMU WS14421, Haplogroup C. H, ZMMU WS14439, Haplogroup C. Scale bars: A, B = 30 µm, C, D, F–H = 10 µm, E = 20 µm.

opencc-by-4.0Sep 2022View details →

Atoms of Confusion Dataset in Java Programs

<p>Double-checked gold standard dataset of Atoms of Confusion in Java. Data extracted from the main source code package of four open-source projects, excluding the test files. This dataset also includes a sample created from two other open-source projects. </p> <table> <thead> <tr> <th scope="col">Project</th> <th scope="col">Version</th> <th scope="col">Repository</th> </tr> </thead> <tbody> <tr> <td>FastUtil</td> <td>8.5.6</td> <td>https://github.com/vigna/fastutil </td> </tr> <tr> <td>Moshi</td> <td>1.12.0</td> <td>https://github.com/square/moshi</td> </tr> <tr> <td>Jimfs</td> <td>1.2</td> <td>https://github.com/google/jimfs</td> </tr> <tr> <td>uCrop</td> <td>2.2.7</td> <td>https://github.com/Yalantis/uCrop</td> </tr> </tbody> </table> <p> </p> <p>The sample was created by extracting Java files from the following projects:</p> <table> <thead> <tr> <th scope="col">Project</th> <th scope="col">Version</th> <th scope="col">Repository</th> </tr> </thead> <tbody> <tr> <td>Guava</td> <td>31.0.1</td> <td>https://github.com/google/guava</td> </tr> <tr> <td>Redisson</td> <td>3.6.16</td> <td>https://github.com/redisson/redisson</td> </tr> </tbody> </table> <p> </p>

opencc-by-4.0Sep 2022View details →

Results of a Study on the Prevalence of Atoms of Confusion in Java Programs

<p>CSV reports and XLSX files of study on the prevalence of Atoms of Confusion in Java programs, generated from the BOHR tool (<a href="https://github.com/wendellmfm/bohr">https://github.com/wendellmfm/bohr</a>). </p>

FIGURE 6 in Taxonomic revision of the Tetraneura akinire species group (Insecta, Aphididae, Eriosomatinae), with description of a new species and a correction of a nomenclatural confusion

FIGURE 6. Emigrant adults: T. ovaliformis sp. nov. (A), T. akinire (B), T. sorini (C). Antennae: T. ovaliformis sp. nov. (D), T. akinire (E), T. sorini (F). Apex of antennae: T. ovaliformis sp. nov. (G), T. akinire (H), T. sorini (I). Ultimate rostral segments: T. ovaliformis sp. nov. (J), T. akinire (K), T. sorini (L). Hind tarsus: T. ovaliformis sp. nov. (M), T. akinire (N), T. sorini (O). Genital plates: T. ovaliformis sp. nov. (P), T. akinire (Q), T. sorini (R).

FIGURE 5 in Taxonomic revision of the Tetraneura akinire species group (Insecta, Aphididae, Eriosomatinae), with description of a new species and a correction of a nomenclatural confusion

FIGURE 5. First instar nymphs produced by emigrants: T. ovaliformis sp. nov. (A), T. akinire (B), T. sorini (C). Hind tibiae and tarsi: T. ovaliformis sp. nov. (D), T. akinire (E), T. sorini (F). Setae on hind tarsi and tibiae: T. ovaliformis sp. nov. (G), T. akinire (H), hairless type T. akinire (I), T. sorini (J). Abdominal wax gland plates: T. ovaliformis sp. nov. (K), T. akinire (L), T. sorini (M).

FIGURE 2 in Taxonomic revision of the Tetraneura akinire species group (Insecta, Aphididae, Eriosomatinae), with description of a new species and a correction of a nomenclatural confusion

FIGURE 2. The length of the hind femorotrochanter in the Tetraneura akinire species group. The mean and SD are indicated. T. ovaliformis sp. nov. (1 and 2), unidentified Korean species (3), T. akinire sensu novo (4-14), and T. sorini (15-20). In the horizontal axis; J, Japan; K, South Korea; F, France; S, Spain; I, Italy; and U, USA.

FIGURE 4 in Taxonomic revision of the Tetraneura akinire species group (Insecta, Aphididae, Eriosomatinae), with description of a new species and a correction of a nomenclatural confusion

FIGURE 4. Fundatrix first instar nymphs: T. ovaliformis sp. nov. (A), T. akinire (B), T. sorini (C). Antennae: T. ovaliformis sp. nov. (D), T. akinire (E), T. sorini (F).

FIGURE 1 in Taxonomic revision of the Tetraneura akinire species group (Insecta, Aphididae, Eriosomatinae), with description of a new species and a correction of a nomenclatural confusion

FIGURE 1. Galls induced by aphids of the Tetraneura akinire species group. T. ovaliformis sp. nov. (greenish globular gall; A, B, and C), unidentified Korean species (greenish globular gall; D and E), T. akinire sensu novo (spindle-shaped galls; F, G, H, and I), and T. sorini (reddish small globular gall; J, K, and L). collection data: A, 10.VI.2015, Sapporo, Japan, Ulmus davidiana; B, 11.VI.2015, Sapporo, Japan, U. davidiana; C, 18.VI.2011, Sapporo, Japan, U. davidiana; D and E, 26.V.2012, Jeongseon, Gangwon-do, South Korea, U. davidiana; F, 28.IV.2012, Kashiwa, Japan, U. parvifolia; G and H, 10.VI.2015, Sapporo, Japan, U. davidiana; I and J, 30.V.2015, Iwamizawa, Japan, U. davidiana; K, 31.V.2020, Iwamizawa, Japan, U. davidiana; L, 7.VI.2020, Iwamizawa, Japan, U. davidiana.

FIGURE 8 in Taxonomic revision of the Tetraneura akinire species group (Insecta, Aphididae, Eriosomatinae), with description of a new species and a correction of a nomenclatural confusion

FIGURE 8. Sexupara adults: Ultimate rostral segments: T. ovaliformis sp. nov. (A), T. akinire (B), T. sorini (C). Hind tarsus: T. ovaliformis sp. nov. (D), T. akinire (E), T. sorini (F). Wax gland plates around the cornicles: T. ovaliformis sp. nov. (G), T. akinire (H), T. sorini (I). Wax gland plates on abdomen: T. ovaliformis sp. nov. (J), T. akinire (K), T. sorini (L). Cornicles: T. ovaliformis sp. nov. (M), T. akinire (N), T. sorini (O). Genital plates: T. ovaliformis sp. nov. (P), T. akinire (Q), T. sorini (R).