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FIGURE 8 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 8 | Mantel test of correlation between genetic (y-axis) and geographic distances (x-axis) among sampled locations. The black line represents the central tendency among the dots in the scatterplot.

FIGURE 7 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 7 | STRUCTURE-like plot illustrating cluster membership for all admixed individuals having <0.5 probability of membership to any group. Sampled locations include La Paz (LAP), Colima (COL), Oaxaca (OAX), Chiriquí (CHI), and Port of Panama (PP).

FIGURE 2 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 2 | Genetic diversity in Lutjanus guttatus from five sampled locations. Numbers of alleles (NA), effective alleles (NEA), and private alleles (NPA) and observed (HO) and unbiased expected heterozygosities (uHE).

FIGURE 1 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 1 | Sampling sites for adult Lutjanus guttatus along the Tropical Eastern Pacific. La Paz (PAZ), Colima (COL), and Oaxaca (OAX) are in Mexican waters and Chiriquí (CHI) and Panama Port (PAN) are in Panama.

FIGURE 5 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 5 | Discriminant Analysis of Principal Components (DAPC) of Lutjanus guttatus from five sampled sites based on 12 microsatellite loci, 80 PCs, and four DA eigenvalues. Sampled locations include La Paz (LAP), Colima (COL), Oaxaca (OAX), Chiriquí (CHI), and Port of Panamá (PP).

FIGURE 4 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 4 | UPGMA dendrogram of Lutjanus guttatus from five sampled locations along the Pacific coast of Mexico (La Paz, Colima, Oaxaca) and Panama (Chiriquí, Port of Panama) based on Nei's genetic distance (1972). Numbers on the nodes indicate the percent of times the illustrated topology was found with 10,000 bootstrap replicates.

FIGURE 6 in Genetic connectivity in the spotted rose snapper Lutjanus guttatus (Lutjaniformes: Lutjanidae) between Mexico and Panama throughout the Tropical Eastern Pacific

FIGURE 6 | STRUCTURE-like plot with estimated cluster memberships for all individuals derived from the DAPC. Sampled locations include La Paz (LAP), Colima (COL), Oaxaca (OAX), Chiriquí (CHI), and Port of Panama (PP).

Sample data connected to Barth et al "SMC motor proteins extrude DNA asymmetrically and can switch directions"

Sample data connected to Barth et al "SMC motor proteins extrude DNA asymmetrically and can switch directions"

Resources for "BMF CP 87: Coastal activities enabling close connections with nature, nature connectedness, and health outcomes"

The current study is conducted to examine the following research questions: <ul> <li>How is the relationship between general coastal activities enabling close connections and mental health in the previous year conditional on the nature connectedness?</li> <li>How is the relationship between general coastal activities enabling close connections and perceived general health in the previous year conditional on the nature connectedness?</li> </ul>

Resources for "BMF CP 86: The associations between coastal activities enabling close connections to nature and health outcomes"

The current study is conducted to examine the following research questions: <ul> <li>How are coastal activities enabling close connections to nature associated with the mental health condition of the visitors in the previous year?</li> <li>How are coastal activities that have close connections to nature associated with the perceived general health condition of the visitors in the previous year?</li> </ul>

Resources for "BMF CP 90: The duration of daily and stay visits as moderators between coastal environment enjoyment and connection and health outcomes"

The current study is conducted to examine the following research questions: <ul> <li>Is the relationship between the enjoyment of and connection to the coastal environment and the visitors’ mental health and perceived general health conditional on the duration of daily visits to the coast in the previous year?</li> <li>Is the relationship between the enjoyment of and connection to the coastal environment and the visitors’ mental health and perceived general health conditional on the duration of stay visits to the coast in the previous year?</li> </ul>

Resources for "BMF CP 89: The relationships between coastal environment enjoyment and connection and health outcomes"

The current study is conducted to examine the following research questions: <ul> <li>How are the enjoyment of and connection to the coastal environment associated with the perceived health outcomes during the previous year’s coastal visits?</li> <li>How are the perceived health outcomes during the previous year’s coastal visits associated with visitors’ mental health and perceived general health?</li> <li>Do the perceived health outcomes during the previous year’s coastal visits mediate the relationships between the enjoyment of and connection to the coastal environment and the visitors’ mental health and perceived general health?</li> </ul>

opencc-by-4.0Oct 2024View details →

The dataset of article "Early Detection of Cognitive Impairment in End-Stage Renal Disease Patients Undergoing Hemodialysis: Insights from Resting-State Functional Connectivity Analysis"

This is a file as dataset of the article "Early Detection of Cognitive Impairment in End-Stage Renal Disease Patients Undergoing Hemodialysis: Insights from Resting-State Functional Connectivity Analysis". It includes fMRI brain imaging data of subjects included in the case group (ESRD group) and healthy control group (HC group).

opencc-by-4.0Aug 2022View details →

SPARC Connectivity Knowledge base of the Autonomic Nervous System

The SPARC Knowledge base of the Autonomic Nervous System (SCKAN) is an integrated graph database composed of three parts: the SPARC dataset metadata graph, ApiNATOMY and NPO models of connectivity, and the larger ontology used  by SPARC which is a combination of the NIF-Ontology and community ontologies. The fastest way to get querying is to follow the instructions in the <a href="https://github.com/SciCrunch/sparc-curation/blob/master/docs/sckan/README.org#getting-started">SCKAN readme file</a>. For background information please see <a href="https://scicrunch.org/sawg/about/SCKAN">https://scicrunch.org/sawg/about/SCKAN</a> and <a href="https://sparc.science/resources/6eg3VpJbwQR4B84CjrvmyD">the SPARC portal resource page about SCKAN.</a> This release contains the raw and compiled data for SCKAN. The release-*.zip contains raw data inputs along with the Blazegraph journal file, the sparc-sckan-graph-*.zip contains the SciGraph database, and sckan-data-*.tar.gz is a Docker image that contains the Blazegraph journal file and the SciGraph database along with the configuration files for running each of the servers. The image is intended  to be used as a data volume with another Docker container that runs the SciGraph and Blazegraph server software. The Docker image containing this data is available live and is likely easier to use than the archived image included in this release. See the <a href="https://github.com/SciCrunch/sparc-curation/blob/master/docs/sckan/README.org#getting-started">SCKAN readme file</a> for the most up-to-date instructions. We would like to thank the members of the SAWG (SPARC Anatomy Working Group, RRID:SCR_018709) for their work on the various connectivity models included in this release. This work was funded by the NIH Common Fund under 3OT2OD030541-01S1.

Fig. 13 in Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution

Fig. 13. Map showing potential Akchagylian transgression mechanisms and possible connection points with brief outline of the requirements for each and the observed phenomena each would be able to explain. The main mechanisms discussed are climate driven base level rise and connection with an adjacent basin. Three potential adjacent water bodies are considered as the source of incoming water (Arctic Ocean, Indian Ocean and the Black Sea). For each of the three two potential gateways are suggested.

Fig. 10 in Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution

Fig. 10. Left: Correlation of late Pliocene - Pleistocene continental stages and reference faunas of the Pontocaspian domain with standard chronostratigraphy and mammal-based biochronological units. Right: Map of mammal reference localities. MN 16: Early Villafranchian/Early Villanyian 1) Diliska (N41.43, E43.46), 2) Kushkuna 1 (N41.28, E45.45), 3) Veselovka (N45.13, E36.92). MN 17: Middle Villafranchian/ Late Villanyian 4) Sablya (N44.53, E43.23¬), 5) Kryzhanovka 1,2 (N46.56, E30.8), 6) Kotsakhuri (N41.35, E46.23), 7) Kryzhanovka 3 (N46.56, E30.8). MN 17-MQ1: Late Villafranchian/Late Villanyian-Early Biharian 8) Muhkai 2 (N42.25, E47.36), 9) Psekups (N44.73, E39.23), 10) Dmanisi (N41.33, E44.34), 11) Tsalka (N41.6, E44.09). Late Villafranchian – Early Galerian / Early Biharian 12) Duzdag 1 (N40.68, E46.89), 13) Tizdar (N45.36, E37.1), 14) Nesmeyanovka (N47.29, E41.5), 15) Sarkel (N47.7, E42.2), 16) Iskra (N45.35, E36.83), 17) Akhalkalaki (N41.4, E43.48). Galerian / Late Biharian 18) Margaritovo 2 (N46.94, E38.87), 19) Haykadzor (N40.54, E43.65). Aurelian / Toringian 20) Chernyi Yar (N48.01, E46.11).

Fig. 14 in Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution

Fig. 14. The successive mollusc faunas in the Pontocaspian region provide clear insights into basin connection and isolation. Age and MIS zonation from Cohen et al. (2013). H = Holocene; LP = Late Pleistocene. Regional phases: CN = Chernomorian; Ne = Neoeuxinian; Ka = Karangatian; Uz = Uzunlarian; Ch= Chaudian; Gu = Gurian; Ku = Kujalnikian; NC = Novocaspian; Kv = Khvalynian; Hi = Hircanian; u-Kz = upper or late Khazarian; l-Kz = lower or early Khazarian; Ba = Bakunian; Ap = Apsheronian; Ak = Akshagylian. Representative bivalve species: (1) Flexopecten glaber; (2) Didacna pseudocrassa; (3) Didacnocatilus guriensis; (4) Submonodacna pleistopleura; (5) Avicardium rariiferum; (6) Avimactra subcaspia; (7) Apsheronia raricostata s.l.; (8) Apsheronia propinqua s.l.; (9) Didacna subpyramidata (1) from Büyükmeriç et al., 2016; (2) from Nevesskaya, 2007; (5-8) from Kolesnikov, 1940.

Fig. 8 in Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution

Fig. 8. Quaternary time scales for the Pontocaspian domain. GPTS with Systems and Stages is after Hilgen et al. (2012), oxygen isotope curve with numbered Marine Isotope Stages (MIS) is after Lisiecki and Raymo (2005). On the right side are the time scales for the Caspian Basin and the Black Sea Basin.

Fig. 7 in Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution

Fig. 7. Paleogeographic maps for the late Pleistocene Pontocaspian region. Arrows indicate the water flow direction in the gateway regions. All maps are based on Yanina (2014).

Fig. 6 in Quaternary time scales for the Pontocaspian domain: Interbasinal connectivity and faunal evolution

Fig. 6. Schematic reconstruction of the Black Sea and Caspian Sea water-level curves in comparison to global oxygen isotopes records of Lisiecki and Raymo (2005) during the Pleistocene to Holocene. Associated interbasinal water exchanges marked by arrows pointing to the right for Mediterranean waters flooding into the Black Sea, arrows pointing to the left for Caspian Sea waters flooding into the Black Sea and double arrows for bidirectional water exchange between Black Sea and Caspian Sea. N.B. Two options exist in literature regarding the position of the Singilian: *Svitoch (2013b and references therein) and **Zastrozhnov et al. (2018 and references therein).