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4,144 results for “ITS barcode”
Figure 2 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 2 Results of ASAP analysis for COI sequences. (A) Distribution of pairwise differences, (B) Ranked pairwise differences.
Figure 1 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 1 Neighbour-Joining tree of the genusTeutonia, obtained from 17 nucleotide COI sequences.and the results of species delimitation analyses. Values near branches show bootstrap support (BS). The results of species delimitation by ASAP procedure are indicated by vertical bars. Country codes (alpha-2 code): DE – Germany, FR – France, MN – Montenegro, NO – Norway, TR – Turkey.
Figure 3 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 3 Teutonia corsicanasp. nov. (A-B, D-G – holotype ♀, Ruisseau de Tuara, France; C – ♀ [CCDB 38559 D12], preserved specimen, Riviere La Solenzara, France): A – coxal and genital field; B, C – genital field; D – palp, medial view (P-1 lacking); E – palp, lateral view; F – I-L-5 and -6; G – IV-L-5 and -6. Scale bars = 100 μm.
Figure 5 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 5 Teutonia cometes(Koch, 1837), ♀, Danilovgrad, spring under the bridge over the Zeta river, Montenegro: A – genital field; B – palp, medial view. Scale bar = 100 μm.
Figure 1 in Hydrodroma angelieri (Acari, Hydrachnidia: Hydrodromidae) a new water mite species from Corsica based on morphological and DNA barcode evidence
Figure 1 Hydrodroma angelieri sp. nov., holotype ♀, Tributary of Ruisseau de Canne, France: A – integument papillae; B – coxal field; C – genital field; D – palp, lateral view; E – palp, medial view; F – gnathosoma; G – chelicera. Scale bars = 100 μm.
Figure 1 in First DNA-barcode for the genus Aegyptobia (Trombidiformes: Tenuipalpidae) and molecular barcodes of spider mites (Trombidiformes: Tetranychidae) from Iran
Figure 1. Neighbor-Joining tree of the COI sequences using Tamura-Nei model. Scale bar represents number of nucleotide substitutions per site. Bootstrap was 1000 replicates. Numbers on nodes represent bootstrap values.
Figure 3 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 3. Mounted specimens illustrating the species of Microgastrinae recovered in this study. A, Cotesia glabrata Telenga ex Carcharodus alceae, Italy. Adult plus cocoons. Gregarious parasitoid; brood sizes vary considerably, host usually well grown or prepupal when killed. The other Cotesia species (near glabrata) look similar and behave in the same way. B, Dolichogenidea sp. near sicaria Marshall, ex Carcharodus alceae, Spain. Adult plus cocoon. Solitary parasitoid, killing the host while still quite young. C, Microgaster australis Thomson, ex Muschampia stauderi, Greece. Adult plus cocoon. Solitary parasitoid, usually killing the host as a prepupa. D, Microgaster nobilis Reinhard, ex Carcharodus alceae, Spain. Adult plus cocoon. Solitary parasitoid, usually killing the host as a prepupa. All specimens are in the collection of the National Museums of Scotland.
Figure 4 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 4. Interaction matrices showing the recorded interactions of Hesperiidae and their hostplants (A), Hesperiidae and their parasitoids (B) and parasitoids and hostplants of Hesperiidae (C). White squares indicate recorded interactions between the taxa in the corresponding row and column, while blue squares indicate lack of interaction.
Figure 2 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 2. Circular cladogram showing ecological interactions among European and North African Hesperiidae, their hostplants, and their microgastrine parasitoids, recovered through DNA barcoding for Hesperiidae and/or parasitoids. Hesperiid, parasitoid and plant cladograms are coloured in orange, blue and green, respectively. Lines representing interactions with parasitoids are coloured in blue, while lines involving hostplant interactions are coloured in green.
Figure 1 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 1. Representation of the study system. Hesperiid larvae feeding on their hostplants can be attacked by a number of parasitoids, which can in turn be attacked by various hyperparasitoids. A, Spialia rosae on its hostplant Rosa sicula. B, third instar larva of Sp. rosae on a silk shelter. C, Microgaster australis parasitizing an L3 Sp. rosae larva. D, Gelis sp. parasitizing M. australis on its cocoon after emerging from the Sp. rosae larva. Drawings by Martí Franch.
Barcoding of episodic memories in the hippocampus of a food-caching bird
<p>The hippocampus is critical for episodic memory. Although hippocampal activity represents place and other behaviorally relevant variables, it is unclear how it encodes numerous memories of specific events in life. To study episodic coding, we leveraged the specialized behavior of chickadees – food-caching birds that form memories at well-defined moments in time whenever they cache food for subsequent retrieval. Our recordings during caching revealed very sparse, transient barcode-like patterns of firing across hippocampal neurons. Each "barcode" uniquely represented a caching event and transiently reactivated during the retrieval of that specific cache. Barcodes co-occurred with the conventional activity of place cells, but were uncorrelated even for nearby cache locations that had similar place codes. We propose that animals recall episodic memories by reactivating hippocampal barcodes. Similarly to computer hash codes, these patterns assign unique identifiers to different events and could be a mechanism for rapid formation and storage of many non-interfering memories.</p>
Naturalis barcode-constrained-phylogeny: pipeline output files used in internship graduate paper
<p>Data used for thesis written by Naomi van Es, bioinformatics student at University of Applied Sciences Leiden. Pipeline was contributed to during internship at Naturalis Biodiversity Centre, supervised by Dr Rutger A. Vos. Include all content of '/data' directory after running the pipeline barcode-constrained-phylogeny, branch <a href="https://github.com/naturalis/barcode-constrained-phylogeny/tree/researchpaper_version">researchpaper_version</a>. Configuration file was set to only use data from taxonomic order Primates and DNA marker COI-5P. Output files include custom database, alignments, constraint trees and subtrees of BOLD barcode data. Example taxonomic family in thesis results is<em> Lemuridae. </em></p>
FIGURE 2 in Mislabeling, illegal capture, and commercialization of Atlantic goliath grouper (Epinephelus itajara) on the Brazilian coast using DNA barcoding
FIGURE 2 | Phylogram based on cytochrome oxidase I (COI) gene amplification using the Neighbor-Joining method. The evolutionary distances were computed using the Kimura 2-parameter model with 10,000 repetitions for samples collected in the northern (Pará State: Bragança Fish Market n = 16 and Curuçá n = 2) and southern (São Paulo: Cananéia Fish Market n = 1; Paraná: Paranaguá Fish Market n = 1 and Curitiba Fish Market n = 4) Brazilian coasts. Bootstrap values are shown next to the branches. The sequences with the accession numbers were downloaded from GenBank.
FIGURE 1 in Mislabeling, illegal capture, and commercialization of Atlantic goliath grouper (Epinephelus itajara) on the Brazilian coast using DNA barcoding
FIGURE 1 | Distribution of sampling sites in the northern (Pará State: Bragança n = 20 and Curuçá n = 2) and southern (São Paulo: Cananéia n = 1; Paraná: Paranaguá n = 1 and Curitiba n = 4) Brazilian coasts.
Figure 6 in A new mite species Fagacarus absalom sp. n. (Astigmata: Acaridae) from the Eastern Palearctic, with 18 rRNA molecular barcodes
Figure 6 Fagacarus absalom sp. n., female (A), male (B) and heteromorphic deutonymph (C–E), DIC photomicrographs: A, B – gnathosoma (arrows point to the filter apparatus); C – dorsal view; D – ventral view; E – dorsal setaed1 ande1.
Figure 5 in A new mite species Fagacarus absalom sp. n. (Astigmata: Acaridae) from the Eastern Palearctic, with 18 rRNA molecular barcodes
Figure 5 Fagacarus absalom sp. n., heteromorphic deutonymph: A – leg I, dorsal view; B – tarsus I, ventral view; C – leg II, dorsal view; D – tarsus II, ventral view; E – leg III, ventral view; F – leg IV, ventral view; G – anal disk.
Figure 3 in A new mite species Fagacarus absalom sp. n. (Astigmata: Acaridae) from the Eastern Palearctic, with 18 rRNA molecular barcodes
Figure 3 Fagacarus absalom sp. n., female (B, C) and male (A, D, E): A – chelicera; B – gnathosoma, ventral view; C – spermatheca; D – genital capsule.
Figure 2 in A new mite species Fagacarus absalom sp. n. (Astigmata: Acaridae) from the Eastern Palearctic, with 18 rRNA molecular barcodes
Figure 2 Fagacarus absalom sp. n., female (A–H) and male (I, J): A–D – legs I–IV, posterior (I, II) and anterior (III, IV) views; E–H – tarsus I–IV, anterior (I, II) and posteror (III, IV) views; I – leg IV, anterior view; J – tarsus IV, posterior view.
Figure 1 in A new mite species Fagacarus absalom sp. n. (Astigmata: Acaridae) from the Eastern Palearctic, with 18 rRNA molecular barcodes
Figure 1 Fagacarus absalom sp. n., female (A, B) and male (C, D): A, C – ventral view; B, D – dorsal view.
Figure 3 in Checklist of Water mites in Mexico. Historical background and DNA barcoding perspectives
Figure 3 Neighbor joining tree based on all worldwideNeumaniaCOI sequences. The name is followed by the barcode index number (BIN). * Without data collection.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.