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233
datasets available to search
ShareScore release 0.9.0
Dataset results
233 results for “Long-reads”
Long-read RNA Sequencing of Human Meningiomas
GEO Series GSE300855. Homo sapiens. 84 samples. Type: Expression profiling by high throughput sequencing.
Long-read nascent RNA sequencing from S. pombe
GEO Series GSE104679. Schizosaccharomyces pombe. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Comparative multi-omic analyses of Trichinella Pseudospiralis based on a new genome assembly by long-read sequencing
GEO Series GSE113105. Trichinella pseudospiralis. 6 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Benchmarking long-read RNA-sequencing technologies with LongBench: a cross-platform reference dataset profiling cancer cell lines with bulk and single-cell approaches
GEO Series GSE303762. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic plasticity is a driver of heritable pollution tolerance in Atlantic killifish [ONT Long-read sequencing; DNA]
GEO Series GSE313974. Fundulus heteroclitus. 4 samples. Type: Other.
Targeted Long-Read Sequencing of the Ewing Sarcoma 6p25.1 Susceptibility Locus
Ewing Sarcoma (EwS) is rare but the second most common cancer in children, adolescents and young adults. Recent studies suggest germline variation in or around GGAA microsatellites may interact with fusion oncoprotein binding causing changes in binding affinity and potentially impacting enhancer activity on nearby target genes. This study aims to better understand germline variation around EwS susceptibility regions by performing long-range haplotype sequencing of these regions using PacBio sequencing. Our analysis focused on characterizing variation in GGAA microsatellite length as well as germline variants in or around the microsatellite and their association with EwS risk.
Reference Long-Read Transcriptomes of Human Peripheral Blood Lymphocytes (PacBio Iso-Seq, Matched to Illumina RNA-Seq Data)
GEO Series GSE202327. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
LINE-1 transposable elements regulate the exit of human pluripotency and early brain development [long-read RNA and DNA sequencing]
GEO Series GSE283599. Homo sapiens. 4 samples. Type: Other.
Pacbio long read Iso-sequencing is performed to acquire a high-precision transcription landscape after STAMBPL1 knockingdown in Huh7 cells（Long-read）
GEO Series GSE276508. Homo sapiens. 4 samples. Type: Other.
On- and off-target effects of paired CRISPR-Cas nickase in primary human cells - long-read
GEO Series GSE241779. Homo sapiens. 6 samples. Type: Other.
Methylation pseudotime analysis for label-free profiling of the temporal chromatin landscape with long-read and single-molecule resolution [ATAC-seq]
GEO Series GSE290974. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Long-read sequencing for molecular diagnostics in constitutional disorders
<p>These are the alignment files (.bam) for specific gene regions (TRIOBP for Patient 1 and STRC for Patient 2) from PacBio long-read sequencing. These patients were referred to genetic testing for hearing loss and received an inconclusive result from the standard of care testing. Long-read sequencing was performed to infer phase without parental samples and resolve the diagnostic dilemma. This is part of the publication submitted to Human Mutation (Conlin LK et al., Long-read sequencing for molecular diagnostics in constitutional genetic disorders, Human Mutation, Submitted).</p>
Long-reads Next Generation Sequencing for the analysis of mitochondrial DNA
<p>Long-reads Next Generation Sequencing for the analysis of mitochondrial DNA</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.