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Supplementary material 4 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Observed and expected heterozygosity:
Supplementary material 3 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Pearson's Chi-squared test for Hardy-Weinberg equilibrium:
Supplementary material 2 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Genotype accumulation curve:
Supplementary material 1 from: Virgilio M, Delatte H, Nzogela YB, Simiand C, Quilici S, De Meyer M, Mwatawala M (2015) Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 525-538. https://doi.org/10.3897/zookeys.540.9618
Map of sampling locations:
Fig. 3 in Area freedom in Mexico from Mediterranean fruit fly (Diptera: Tephritidae): a review of over 30 years of a successful containment program using an integrated area-wide SIT approach
Fig. 3. Location and distance of the leading edge of the Mediterranean fruit fly infestation for the 3 infestation fronts: North Transversal Strip - Marques de Comillas (NTS), Northwest-Comalapa (NW) and Southwest-Soconusco (SW)) in relation to the limits of the pest free areas (PFA) in Chiapas, Mexico for the years 2004-2013. The contour lines of are equidistant 20 km apart and are used as a reference of the distance between the leading edge of the infestation and the limits of the PFA.
Fig. 1 in Area freedom in Mexico from Mediterranean fruit fly (Diptera: Tephritidae): a review of over 30 years of a successful containment program using an integrated area-wide SIT approach
Fig. 1. Schematic representation of the Pest Free Area (PFAs) in Mexico and in the Containment Barrier in Guatemala, with its 3 working areas: the Eradication or Low Pest Prevalence Area (LPA) (2a), the Suppression Area (2b) and the Monitoring Area (2c). The Mediterranean fruit fly pressure is from the east and the south toward the west and the north, with the leading edge of the pest population infestation located at some point within the suppression area along the 3 main infestation fronts as described in the text. The case is shown where the border between Mexico and Guatemala is the limit of the PFA; however, in years of high pest pressure the barrier was partially moved into the PFAs of Chiapas and Tabasco, while in favorable years the PFA in Guatemala grew an annual average of 20-30 km with the containment barrier being moved away from the Mexico-Guatemala border.
Data for SPONGE-FEP SITS
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A sit-and-wait predator, but not an active-pursuit predator, alters pollinator-mediated selection on floral traits
<p>Indirect species interactions are ubiquitous in nature, often outnumbering direct species interactions. Yet despite evidence that indirect interactions have strong ecological effects, relatively little is known about whether they can shape adaptive evolution by altering the strength and/or direction of natural selection. We tested whether indirect interactions affect the strength and direction of pollinator-mediated selection on floral traits of the bumble-bee pollinated wildflower Lobelia siphilitica. We estimated the indirect effects of two pollinator predators with contrasting hunting modes: dragonflies (Aeshnidae and Corduliidae) and ambush bugs (Phymata americana, Reduviidae). Because dragonflies are active pursuit predators, we hypothesized that they would strengthen pollinator-mediated selection by weakening plant-pollinator interactions (i.e. a density-mediated indirect effect). In contrast, because ambush bugs are sit-and-wait predators, we hypothesized that they would weaken or reverse the direction of pollinator-mediated selection by altering pollinator foraging behavior (i.e. a trait-mediated indirect effect). Specifically, if ambush bugs hunt from plants with traits that attract pollinators (i.e. prey), then pollinators will spend less time visiting those plants, weakening or reversing the direction of selection on attractive floral traits. We did not find evidence that high dragonfly abundance strengthened selection on floral traits via a density-mediated indirect effect: neither pollen limitation (a proxy for the strength of plant-pollinator interactions) nor directional selection on floral traits of L. siphilitica differed significantly between high- and low-dragonfly abundance treatments. In contrast, we did find evidence that ambush bug presence affected selection on floral traits via a trait-mediated indirect effect: ambush bugs hunted from L. siphilitica plants with larger daily floral displays, reversing the direction of pollinator-mediated selection on daily display size. These results suggest that indirect species interactions have the potential to shape adaptive evolution by altering natural selection.</p>
Figure 3 from: Sutton BD, Steck GJ, Norrbom AL, Rodriguez EJ, Srivastava P, Alvarado NN, Colque F, Landa EY, Sánchez JJL, Quisberth E, Peñaranda EA, Clavijo PAR, Alvarez-Baca JK, Zapata TG, Ponce P (2015) Nuclear ribosomal internal transcribed spacer 1 (ITS1) variation in the Anastrepha fraterculus cryptic species complex (Diptera, Tephritidae) of the Andean region. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 175-191. https://doi.org/10.3897/zookeys.540.6147
Figure 3 - Overall similarity inferred by UPGMA (unweighted pair group method with arithmetic mean) cluster analysis (Sneath and Sokal (1973) of Andean Anastrepha fraterculus ITS1 sequence types (489nt). Distances were computed by the maximum composite likelihood method (Tamura et al. (2004) in number of base substitutions per site with gaps eliminated.
Figure 2 from: Sutton BD, Steck GJ, Norrbom AL, Rodriguez EJ, Srivastava P, Alvarado NN, Colque F, Landa EY, Sánchez JJL, Quisberth E, Peñaranda EA, Clavijo PAR, Alvarez-Baca JK, Zapata TG, Ponce P (2015) Nuclear ribosomal internal transcribed spacer 1 (ITS1) variation in the Anastrepha fraterculus cryptic species complex (Diptera, Tephritidae) of the Andean region. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 175-191. https://doi.org/10.3897/zookeys.540.6147
Figure 2 - ITS1 polymorphic region sequences for Andean Anastrepha fraterculus; hypothetical alignment.
Figure 1 from: Juárez ML, Devescovi F, Břízová R, Bachmann G, Segura DF, Kalinová B, Fernández P, Ruiz MJ, Yang J, Teal PEA, Cáceres C, Vreysen MJB, Hendrichs J, Vera MT (2015) Evaluating mating compatibility within fruit fly cryptic species complexes and the potential role of sex pheromones in pre-mating isolation. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 125-155. https://doi.org/10.3897/zookeys.540.6133
Figure 1 - Walk-in field cage set up to evaluate female response to male pheromone: a artificial lek hanging from the tree b Anastrepha fraterculus female over an artificial lek.
Figure 2 from: Hee AKW, Ooi YS, Wee SL, Tan KH (2015) Comparative sensitivity to methyl eugenol of four putative Bactrocera dorsalis complex sibling species – further evidence that they belong to one and the same species B. dorsalis. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 313-321. https://doi.org/10.3897/zookeys.540.6099
Figure 2 - Probit lines of Bactrocera dorsalis and the former taxa Bactrocera papayae, Bactrocera philippinensis and Bactrocera invadens attraction to methyl eugenol.
Figure 1 from: Hee AKW, Ooi YS, Wee SL, Tan KH (2015) Comparative sensitivity to methyl eugenol of four putative Bactrocera dorsalis complex sibling species – further evidence that they belong to one and the same species B. dorsalis. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 313-321. https://doi.org/10.3897/zookeys.540.6099
Figure 1 - Dose-sensitivity response curves of Bactrocera dorsalis and the former taxa Bactrocera papayae, Bactrocera invadens and Bactrocera philippinensis to methyl eugenol at different doses.
Figure 6 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 6 - Cytogenetic summary of sexual chromosome pair. Ideogram of sex chromosomes of Anastrepha fraterculus from Argentina (most frequent karyotype). Relative location of C-Bands, DAPI/CMA bands, 18S and anti-H3S28ph hybridization signals.
Figure 4 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 4 - Immunodetection analysis with H3S28ph antibody. Mitotic chromosome preparations of male (A, B, C) and female (D, E, F) individuals from Anastrepha fraterculus A, D DAPI stain B, E anti-H3S28ph hybridization signal C, F Merged images. Arrow heads indicate sex chromosome position.
Figure 1 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 1 - C-Band Ideogram. Sex chromosomes configurations of Anastrepha fraterculus found in Argentina (redrawn from Basso 2003). * Position of centromeres in each chromosome.
Figure 3 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 3 - 18S rDNA FISH analysis. Mitotic chromosome preparations from third instar larvae of Anastrepha fraterculus male. A DAPI stain B rDNA hybridization signal (autologous probe) C Merged images.
Figure 2 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 2 - The most frequent karyotype of Anastrepha fraterculus found in Argentina. Mitotic chromosome preparations from third instar larvae of Anastrepha fraterculus male. A C-Bands B DAPI stain C CMA stain D Merged DAPI/CMA images.
Figure 5 from: Giardini MC, Milla FH, Lanzavecchia S, Nieves M, Cladera JL (2015) Sex chromosomes in mitotic and polytene tissues of Anastrepha fraterculus (Diptera, Tephritidae) from Argentina: a review. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 83-94. https://doi.org/10.3897/zookeys.540.6058
Figure 5 - 18S rDNA FISH analysis in polytene and mitotic tissues. Polytene and mitotic chromosome preparations obtained from third instar larvae of male (A) and female (B) of Anastrepha fraterculus. In each case: 1 Polytene chromosomes DAPI stain 2 Polytene chromosomes 18S rDNA hybridization signa (FISH) 3 Polytene chromosomes merged image (DAPI/FISH) 4 Mitotic chromosomes DAPI stain 5 Mitotic chromosomes 18S rDNA hybridization signal (FISH) 6 Mitotic chromosomes merged image (DAPI/FISH).
Figure 5 from: Aketarawong N, Isasawin S, Sojikul P, Thanaphum S (2015) Gene flow and genetic structure of Bactrocera carambolae (Diptera, Tephritidae) among geographical differences and sister species, B. dorsalis, inferred from microsatellite DNA data. In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 239-272. https://doi.org/10.3897/zookeys.540.10058
Figure 5 - Simplified network of Bactrocera carambolae and Bactrocera dorsalis groups, and the sequential disconnection of the network. The network was constructed using eight SSRs. Scanning was done for decreasing thresholds A is the fully connected network B is the percolation threshold (Dp = 0.20, with all links corresponding to distances superior to Dp excluded). DP, JK, and NT are connecting between Bactrocera carambolae and Bactrocera dorsalis groups. Red dashed lines with number are corresponded to the threshold values, revealing serial disconnection of the network C is the lowest threshold (thr = 0.15).
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