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Population-based Age-stratified Seroprevalence Investigation on SARS-CoV-2 Virus in Selected States of High and Low Burden of Disease in Nigeria
<p>Results of population-based age stratified seroepidemiological investigation in Nigeria</p>
Population-based age-stratified seroepidemiological investigation protocol for coronavirus 2019 (COVID-19) infection in Kyrgyz Republic
<p>Results of population-based age stratified seroepidemiological investigation in Kyrgyzstan.</p>
Population-based seroepidemiological investigation for coronavirus 2019 (COVID-19) infection in Cox's Bazar Rohingya camps
<p>Population-based age stratified seroepidemiological investigation in Bangladesh</p>
Population-based Age-Stratified Seroepidemiological Investigation for Coronavirus 2019 (COVID-19) Infection in Indonesia
<p>Results of population-based age stratified seroepidemiological investigation in Indonesia</p>
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear. in Tragulidae
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear.
Subspecies and Distribution. S. s. scrofa Linnaeus, 1758 — W Europe, from Denmark, Germany, Poland, and Czech Republic to N Italy and N Iberian Peninsula; possibly also Albania. The taxonomic status of animals in Austria, Switzerland, Slovenia, and Slovakia is unclear but presumably these populations are included in scrofa, as are the populations of Sweden, Finland, and the Baltic states. However, restocking of once depleted populations, for example in Italy, has likely involved the introduction and mixing of this subspecies with other subspecies, such as attila. S. s. affinis Gray, 1847 — S India and Sri Lanka. S. s. algirus Loche, 1867 — Tunisia, Algeria, and Morocco, on the coastal side of the mountains or in the low montane areas. S. s. attila Thomas, 1912 — Hungary, Ukraine, C & S Belarus, Romania, Moldova, and S Russia towards the N flank of the Caucasus, but not including the Transcaucasian countries of Georgia, Armenia, and Azerbaijan. The range possibly extends as far S as the Mesopotamian Delta in Iraq, in which case it would likely include W & SW Iran, and possibly E Turkey and Syria, where it borders with lybicus. Such a range could not be easily reconciled with a statement by Groves that "the difference between pigs from N and S of the Caucasus is quite striking; Transcaucasian boars are certainly not attila." This subspecies may also extend into C Asia and include Kazakhstan, Uzbekistan, and Turkmenistan, but no data exist to support this. S. s. baeticus Thomas, 1912 — originally described from Coto Donana, S Spain, and later merged with meridionalis; also S Portugal. Unless evidence is found that these Italian and Iberian populations are the relics of a much larger formerly contiguous range, this subspecies should be kept as distinct. S. s. coreanus Heude, 1897 — Korean Peninsula. S. s. eristatus Wagner, 1839 — Himalayas S to C India and E to Indochina (N of the Kra Isthmus). S. s. davidi Groves, 1981 — the arid zone from E Iran to Gujarat, including Pakistan and NW India, and perhaps N to Tajikistan. S. s. leucomystax Temminck, 1842 — main Is ofJapan (Honshu, Shikoku, Kyushu, Nakadori, Hiburijima, Tojima, Kushima, and other smaller Is). S. s. lybicus Gray, 1868 — Bulgaria, Greece, Turkey, Syria, Jordan, Israel, Palestine, in the past also in Lybia, and Egypt. The former Yugoslavia was included in its range, which would suggest that now Slovenia, Serbia, Croatia, Bosnia and Herzegovina, Montenegro, and Kosovo are within the range of this subspecies, although the exact boundaries are unclear. Pigs from Albania have been assigned to S. s. scrofa. S. s. majori De Beaux & Festa, 1927 — C & S Italian Peninsula. S. s. menidionalis Forsyth Major, 1882 — Corsica and Sardinia, with the proviso that the two populations are very likely to be introduced or feral. S. s. moupinensis Milne-Edwards, 1871 — China, S to Vietnam and W to Sichuan. S. s. nigripes Blanford, 1875 — the flanks of the Tianshan mountains in Kyrgyzstan and NW China (Xinjiang). An animal photographed in NE Iran (Golestan) looked like this subspecies. S. s. nukiuanus Kuroda, 1924 — Iriomote, Ishigaki, Okinawa, Tokunoshima, Amamioshima, and Kakerome Is in the Ryukyu chain in extreme S Japan, though some of these populations have hybridized with introduced domesticates. S. s. sibiricus Staffe, 1922 — Mongolia and Transbaikal (S & E of Lake Baikal). S. s. tawvanus Swinhoe, 1863 — Taiwan. S. s. ussuricus Heude, 1888 — far E Russia and the Manchurian region (China). Korean populations were previously included in this subspecies, but based on new evidence, the Korean taxon seems more similar to moupinensis. S. s. vittatus Boie, 1828 — Malay Peninsula, S of the Isthmus of Kra, the offshore islands of Terutai and Langkawi, Sumatra, Riau Archipelago, Java, Bali, and a range of smaller islands around these, including Babi, Bakong, Batam, Bawean, Bengkalis, Bintan, Bulan, Bunguran, Cuyo, Deli, Durian, Enggano, Galang, Jambongan, Karimon (Riau Is), Kundur, Lagong, Laut, Lingga, Lingung, Mapor, Moro Kecil, North Pagai, Nias, Panaitan, Payong, Penang, Pinie, Rupat, Siantan, Siberut, Simeulue, Singkep, Sugi, Sugi Bawa, Telibon, Tinggi, Tuangku, and the Tambelan Is. This species was originally present from the British Is in the extreme W, through Eurasia from S Scandinavia to S Siberia, extending as far E as Korea and Japan, and SE into some of the Sunda Is and Taiwan. In the S the species ranged along the Nile Valley to Khartoum, and N of the Sahara in Africa, more orless following the continental coasts of S, E, and SE Asia. Within this range it was absent only from extremely dry deserts, e.g. the driest regions of Mongolia and in China W of Sichuan; and alpine zones, such as the high altitudes of Pamir and Tien Shan. In recent centuries, the range of S. scrofa has changed dramatically because of hunting and changes in available habitat. The species disappeared from the British Is in the 17" century, from Denmark in the 19" century, and was greatly reduced in range and numbers in the 20" century from areas as distant as Tunisia, Sudan, Germany, and Russia. Following these severe declines, there were some slight population recoveries in Russia, Italy, Spain, and Germany in the mid-20™ century, and natural and assisted range expansions in Denmark and Sweden. The species has also been inadvertently reintroduced in various locations in the Great Britain via escapees of mixed origin from commercial farming enterprises. Ex-S. scrofa stocks also occur as introduced feral populations in various other parts of the world, including Australia, New Zealand, the eastern Malay Archipelago, and in North, Central, and South America. In all of these areas they are now generally recognized as a major pest. in Suidae
Subspecies and Distribution. S. s. scrofa Linnaeus, 1758 — W Europe, from Denmark, Germany, Poland, and Czech Republic to N Italy and N Iberian Peninsula; possibly also Albania. The taxonomic status of animals in Austria, Switzerland, Slovenia, and Slovakia is unclear but presumably these populations are included in scrofa, as are the populations of Sweden, Finland, and the Baltic states. However, restocking of once depleted populations, for example in Italy, has likely involved the introduction and mixing of this subspecies with other subspecies, such as attila. S. s. affinis Gray, 1847 — S India and Sri Lanka. S. s. algirus Loche, 1867 — Tunisia, Algeria, and Morocco, on the coastal side of the mountains or in the low montane areas. S. s. attila Thomas, 1912 — Hungary, Ukraine, C & S Belarus, Romania, Moldova, and S Russia towards the N flank of the Caucasus, but not including the Transcaucasian countries of Georgia, Armenia, and Azerbaijan. The range possibly extends as far S as the Mesopotamian Delta in Iraq, in which case it would likely include W & SW Iran, and possibly E Turkey and Syria, where it borders with lybicus. Such a range could not be easily reconciled with a statement by Groves that "the difference between pigs from N and S of the Caucasus is quite striking; Transcaucasian boars are certainly not attila." This subspecies may also extend into C Asia and include Kazakhstan, Uzbekistan, and Turkmenistan, but no data exist to support this. S. s. baeticus Thomas, 1912 — originally described from Coto Donana, S Spain, and later merged with meridionalis; also S Portugal. Unless evidence is found that these Italian and Iberian populations are the relics of a much larger formerly contiguous range, this subspecies should be kept as distinct. S. s. coreanus Heude, 1897 — Korean Peninsula. S. s. eristatus Wagner, 1839 — Himalayas S to C India and E to Indochina (N of the Kra Isthmus). S. s. davidi Groves, 1981 — the arid zone from E Iran to Gujarat, including Pakistan and NW India, and perhaps N to Tajikistan. S. s. leucomystax Temminck, 1842 — main Is ofJapan (Honshu, Shikoku, Kyushu, Nakadori, Hiburijima, Tojima, Kushima, and other smaller Is). S. s. lybicus Gray, 1868 — Bulgaria, Greece, Turkey, Syria, Jordan, Israel, Palestine, in the past also in Lybia, and Egypt. The former Yugoslavia was included in its range, which would suggest that now Slovenia, Serbia, Croatia, Bosnia and Herzegovina, Montenegro, and Kosovo are within the range of this subspecies, although the exact boundaries are unclear. Pigs from Albania have been assigned to S. s. scrofa. S. s. majori De Beaux & Festa, 1927 — C & S Italian Peninsula. S. s. menidionalis Forsyth Major, 1882 — Corsica and Sardinia, with the proviso that the two populations are very likely to be introduced or feral. S. s. moupinensis Milne-Edwards, 1871 — China, S to Vietnam and W to Sichuan. S. s. nigripes Blanford, 1875 — the flanks of the Tianshan mountains in Kyrgyzstan and NW China (Xinjiang). An animal photographed in NE Iran (Golestan) looked like this subspecies. S. s. nukiuanus Kuroda, 1924 — Iriomote, Ishigaki, Okinawa, Tokunoshima, Amamioshima, and Kakerome Is in the Ryukyu chain in extreme S Japan, though some of these populations have hybridized with introduced domesticates. S. s. sibiricus Staffe, 1922 — Mongolia and Transbaikal (S & E of Lake Baikal). S. s. tawvanus Swinhoe, 1863 — Taiwan. S. s. ussuricus Heude, 1888 — far E Russia and the Manchurian region (China). Korean populations were previously included in this subspecies, but based on new evidence, the Korean taxon seems more similar to moupinensis. S. s. vittatus Boie, 1828 — Malay Peninsula, S of the Isthmus of Kra, the offshore islands of Terutai and Langkawi, Sumatra, Riau Archipelago, Java, Bali, and a range of smaller islands around these, including Babi, Bakong, Batam, Bawean, Bengkalis, Bintan, Bulan, Bunguran, Cuyo, Deli, Durian, Enggano, Galang, Jambongan, Karimon (Riau Is), Kundur, Lagong, Laut, Lingga, Lingung, Mapor, Moro Kecil, North Pagai, Nias, Panaitan, Payong, Penang, Pinie, Rupat, Siantan, Siberut, Simeulue, Singkep, Sugi, Sugi Bawa, Telibon, Tinggi, Tuangku, and the Tambelan Is. This species was originally present from the British Is in the extreme W, through Eurasia from S Scandinavia to S Siberia, extending as far E as Korea and Japan, and SE into some of the Sunda Is and Taiwan. In the S the species ranged along the Nile Valley to Khartoum, and N of the Sahara in Africa, more orless following the continental coasts of S, E, and SE Asia. Within this range it was absent only from extremely dry deserts, e.g. the driest regions of Mongolia and in China W of Sichuan; and alpine zones, such as the high altitudes of Pamir and Tien Shan. In recent centuries, the range of S. scrofa has changed dramatically because of hunting and changes in available habitat. The species disappeared from the British Is in the 17" century, from Denmark in the 19" century, and was greatly reduced in range and numbers in the 20" century from areas as distant as Tunisia, Sudan, Germany, and Russia. Following these severe declines, there were some slight population recoveries in Russia, Italy, Spain, and Germany in the mid-20™ century, and natural and assisted range expansions in Denmark and Sweden. The species has also been inadvertently reintroduced in various locations in the Great Britain via escapees of mixed origin from commercial farming enterprises. Ex-S. scrofa stocks also occur as introduced feral populations in various other parts of the world, including Australia, New Zealand, the eastern Malay Archipelago, and in North, Central, and South America. In all of these areas they are now generally recognized as a major pest.
Impacts of using different standard populations in calculating age-standardized death rates when age-specific death rates in the populations being compared do not have a consistent relationship: A cross-sectional population-based observational study on US state HIV death rates
<p><strong>Objective</strong>: To examine if the rankings of state HIV age-standardized death rates (ASDRs) changed if different standard population (SP) was used.</p> <p><strong>Design</strong>:<strong> </strong>A cross-sectional population-based observational study. Setting 36 states in the United States.</p> <p><strong>Participants</strong>: People died from 2015 to 2019.</p> <p><strong>Main outcome measures</strong>: State HIV ASDR using 4 SPs, namely WHO2000, US2000, US2mor020, and Eur2011–2030.</p> <p><strong>Results</strong>: The rankings of 19 states did not change when ASDRs were calculated using US2000 and US2020. Of the 17 states whose rankings changed, the rankings of 9 states calculated using US2000 were higher than those calculated using US2020; in 8 states, the rankings were lower. The states with the greatest changes in rankings between US2000 and US2020 were Kentucky (12th and 9th, respectively) and Massachusetts (8th and 11th, respectively).</p> <p><strong>Conclusions</strong>: State ASDRs calculated using the current official SP (US2000) weigh middle-age HIV death rates more heavily than older-age HIV death rates, resulting in lower ASDRs among states with higher older-age HIV death rates.</p>
Subspecies and Distribution. P. l. longimembris Coues, 1875 — SW USA (Mojave Desert and Transverse Ranges, SW California). P. l. aestivus Huey, 1928 — NW Mexico (W base Sierra Juarez to Valle de la Trinidad, N Baja California). P.l. arizonensis Goldman, 1931 — SW USA (SC Utah and NC Arizona to SE Nevada). P. l.bangsi Mearns, 1898 — SW USA (W Colorado Desert of S California). P. l. bombycinus Osgood, 1907 — SW USA and NW Mexico (lower Colorado River Valley of SE California, SW Arizona, NE Baja California, and NW Sonora). P. l. brevinasus Osgood, 1900 — SW USA (arid coastal basins of SW California). P. l. gulosus Hall, 1941 — W USA (along the W margin of former Pleistocene Lake Bonneville in the Great Basin of E Nevada and W Utah). P. l. internationalis Huey, 1939 — SW USA and NW Mexico (SC California and adjacent NC Baja California). P. l. kinoensis Huey, 1935 — NW Mexico (disjunct and geographically restricted population along Bahia Kino, W Sonora), but may be extinct. P. l. nevadensis Merriam, 1894 — W USA (Great Basin of SE Oregon, NE California, and NC Nevada). P. l. pacificus Mearns, 1898 — SW USA (coastal plains of SW California to the USA-Mexico border). P. I. panamintinus Merriam, 1894 — SW USA (Great Basin of W Nevada and SE California). P. l. pimensis Huey, 1937 — SW USA (disjunct distribution in SC Arizona). P. l. salinensis Bole, 1937 — SW USA (restricted distribution in the Salinas Valley of SE California). P. l. tularensis Richardson, 1937 — SW USA (restricted distribution in the upper valley of the Kern River, SC California). P. l. venustus Huey, 1930 — NW Mexico (known only from the type locality of San Agustin, NC Baja California). in Heteromyidae
Subspecies and Distribution. P. l. longimembris Coues, 1875 — SW USA (Mojave Desert and Transverse Ranges, SW California). P. l. aestivus Huey, 1928 — NW Mexico (W base Sierra Juarez to Valle de la Trinidad, N Baja California). P.l. arizonensis Goldman, 1931 — SW USA (SC Utah and NC Arizona to SE Nevada). P. l.bangsi Mearns, 1898 — SW USA (W Colorado Desert of S California). P. l. bombycinus Osgood, 1907 — SW USA and NW Mexico (lower Colorado River Valley of SE California, SW Arizona, NE Baja California, and NW Sonora). P. l. brevinasus Osgood, 1900 — SW USA (arid coastal basins of SW California). P. l. gulosus Hall, 1941 — W USA (along the W margin of former Pleistocene Lake Bonneville in the Great Basin of E Nevada and W Utah). P. l. internationalis Huey, 1939 — SW USA and NW Mexico (SC California and adjacent NC Baja California). P. l. kinoensis Huey, 1935 — NW Mexico (disjunct and geographically restricted population along Bahia Kino, W Sonora), but may be extinct. P. l. nevadensis Merriam, 1894 — W USA (Great Basin of SE Oregon, NE California, and NC Nevada). P. l. pacificus Mearns, 1898 — SW USA (coastal plains of SW California to the USA-Mexico border). P. I. panamintinus Merriam, 1894 — SW USA (Great Basin of W Nevada and SE California). P. l. pimensis Huey, 1937 — SW USA (disjunct distribution in SC Arizona). P. l. salinensis Bole, 1937 — SW USA (restricted distribution in the Salinas Valley of SE California). P. l. tularensis Richardson, 1937 — SW USA (restricted distribution in the upper valley of the Kern River, SC California). P. l. venustus Huey, 1930 — NW Mexico (known only from the type locality of San Agustin, NC Baja California).
FIGURE. Drosera communis (a–d): a, habit with emerging inflorescence (Parque Nacional das Sempre-Vivas, MG); b, habit with emerging inflorescence; c, variation in flower color within a population (Parque Nacional da Chapada dos Veadeiros, GO); d, habit (Paranapiacaba, SP). Drosera esmeraldae (e, f): e, habit (Puerto Inirida, Guainía, Colombia); f, flower (Gran Sabana, Bolívar, Venezuela). Drosera graminifolia (g–i): g, habit; h, detail of the leaf bases and stipules; i, flower (Serra do Caraça, MG). Photo credits: a–d, g–i by PMG; e by FR; f by AF. in A synopsis of the genus Drosera (Droseraceae) in Brazil
FIGURE. Drosera communis (a–d): a, habit with emerging inflorescence (Parque Nacional das Sempre-Vivas, MG); b, habit with emerging inflorescence; c, variation in flower color within a population (Parque Nacional da Chapada dos Veadeiros, GO); d, habit (Paranapiacaba, SP). Drosera esmeraldae (e, f): e, habit (Puerto Inirida, Guainía, Colombia); f, flower (Gran Sabana, Bolívar, Venezuela). Drosera graminifolia (g–i): g, habit; h, detail of the leaf bases and stipules; i, flower (Serra do Caraça, MG). Photo credits: a–d, g–i by PMG; e by FR; f by AF.
The appendix for dynamic model of respiratory infectious disease transmission by population mobility based on city network
<p>First, a scale-free city network was established, and the shortest path between any two nodes was determined. Second, the movement path of tourists was designed based on the shortest path. Subsequently, every infected person's information, such as the city, infection time, onset, and hospitalisation, was confirmed based on their movement path. Third, the features of the transmission path and time distribution of the epidemic were characterised after summarising the information. Finally, the reliability of the model was verified.</p>
Dataset belonging to SNF project: Use of physiologically based pharmacokinetic modelling to simulate dosing requirements of long-acting intramuscular antiretroviral drugs in special populations and to manage drug-drug interactions
Open the record for dataset details and reuse information.
Data used for analysis in "Calibrating tropical forest coexistence in ecosystem demography models using multi-objective optimization through population-based parallel surrogate search"
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Dataset for: Factors associated with self-reported diagnosed asthma in urban and rural Malawi: observations from a population-based study of 3 non-communicable diseases
<p>This dataset was used in analyses reported on the in paper with the same title, published in PLOS Global Health.</p>
Base data for "Interpretable semi-supervised population prediction and disaggregation using ancillary data"
<p>Dataset used for experiments for the paper "Interpretable semi-supervised population prediction and disaggregation using ancillary data".</p> <p>The data comes from various sources, some of them cannot be legally redistributed; in any case, the provider of the data is clearly indicated in each folder.</p>
An evaluation of pool-sequencing transcriptome-based exon capture for population genomics of non-model species.
<p>This archive is associated with the article “An evaluation of pool-sequencing transcriptome-based exon capture for population genomics of non-model species.”. Authors: Emeline Deleury, Thomas Guillemaud, Aurelie Blin & Eric Lombaert.</p> <p>The archive contains :<br> - The sequences of the 5,717 Harmonia axyridis randomly selected CDS (5717-targeted-CDS-sequences.gff3, sequence in FASTA format at the end of the file)<br> - For the subset of 3,161 targeted CDS that have a genomic match over their entire length, the positions of exons on transcripts (3161-targeted-CDS-EXON-POSITIONS.csv)</p>
Cellular population data (Agent-based model CRC)
Open the record for dataset details and reuse information.
Data from: Population genetic structure and demographic history of Atrina pectinata based on mitochondrial DNA and microsatellite markers
The pen shell, Atrina pectinata, is one of the commercial bivalves in East Asia and thought to be recently affected by anthropogenic pressure (habitat destruction and/or fishing pressure). Information on its population genetic structure is crucial for the conservation of A. pectinata. Considering its long pelagic larval duration and iteroparity with high fecundity, the genetic structure for A. pectinata could be expected to be weak at a fine scale. However, the unusual oceanography in the coasts of China and Korea suggests potential for restricted dispersal of pelagic larvae and geographical differentiation. In addition, environmental changes associated with Pleistocene sea level fluctuations on the East China Sea continental shelf may also have strongly influenced historical population demography and genetic diversity of marine organisms. Here, partial sequences of the mitochondrial Cytochrome c oxidase subunit I (COI) gene and seven microsatellite loci were used to estimate population genetic structure and demographic history of seven samples from Northern China coast and one sample from North Korea coast. Despite high levels of genetic diversity within samples, there was no genetic differentiation among samples from Northern China coast and low but significant genetic differentiation between some of the Chinese samples and the North Korean sample. A late Pleistocene population expansion, probably after the Last Glacial Maximum, was also demonstrated for A. pectinata samples. No recent genetic bottleneck was detected in any of the eight samples. We concluded that both historical recolonization (through population range expansion and demographic expansion in the late Pleistocene) and current gene flow (through larval dispersal) were responsible for the weak level of genetic structure detected in A. pectinata.
Data from: Fine-scale genetic structure in a wild bird population: the role of limited dispersal and environmentally-based selection as causal factors
Individuals are typically not randomly distributed in space; consequently ecological and evolutionary theory depends heavily on understanding the spatial structure of populations. The central challenge of landscape genetics is therefore to link spatial heterogeneity of environments to population genetic structure. Here, we employ multivariate spatial analyses to identify environmentally induced genetic structures in a single breeding population of 1174 great tits Parus major genotyped at 4701 single-nucleotide polymorphism (SNP) loci. Despite the small spatial scale of the study relative to natal dispersal we found multiple axes of genetic structure. We built distance-based Moran's eigenvector maps to identify axes of pure spatial variation, which we used for spatial correction of regressions between SNPs and various external traits known to be related to fitness components (avian malaria infection risk, local density of conspecifics, oak tree density and altitude). We found clear evidence of fine-scale genetic structure, with 21, 7 and 9 significant SNPs respectively associated with infection risk by two species of avian malaria (Plasmodium circumflexum and P. relictum) and local conspecific density. Such fine-scale genetic structure relative to dispersal capabilities suggests ecological and evolutionary mechanisms maintain within-population genetic diversity in this population with the potential to drive micro-evolutionary change.
FIGURES 3–8 in Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a population previously known as Porphyra columbina from the central coast of Chile
FIGURES 3–8. Vegetative and reproductive characteristics of Pyropia orbicularis sp. nov. 3. Surface view of vegetative region of the thallus. 4. Surface view of basal, rhizoidal cells. 5. Cross-section of vegetative region of thallus. 6. Trichogyne (arrow). 7. Surface view of zygotosporangia. 8. Fertile region of the blade with packets of developing zygotosporangia (larger and dark) and packets of spermatangia (smaller and colourless).
FIGURE 9 in Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a population previously known as Porphyra columbina from the central coast of Chile
FIGURE 9. Maximum Likelihood (ML) rooted tree for rbcL sequences (876 bp) of Pyropia. Porphyra mumfordii, Porphyra purpurea and Porphyra umbilicalis were used as outgroups. For each node, ML bootstrap values and Bayesian Posterior Probabilities are indicated (ML/BPP). Only high support values (>60) are shown; '-' = clade not observed in the Bayesian Inference. Next to collapsed branches are abbreviated species or sequences names, GENBANK accession numbers have been omitted for brevity but are listed in Table 2. Regions where specimens were collected are indicated within parenthesis: SA = South Atlantic, SP = South Pacific, SO = Southern Ocean. Thick lines highlight the southern hemisphere clade that includes Pyropia orbicularis sp. nov.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.