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227
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ShareScore release 0.7.1
Dataset results
227 results for “demographic history”
Data from: Out of Africa: demographic and colonization history of the Algerian mouse (Mus spretus Lataste)
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Data from: Speciation in mountain refugia: phylogeography and demographic history of the pine siskin and black-capped siskin complex
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Data from: Effects of demographic stochasticity and life-history strategies on times and probabilities to fixation
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Data from: Origin and demographic history of the endemic Taiwan spruce (Picea morrisonicola)
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Differentiated Demographic Histories and Local Adaptations between Sherpas and Tibetans
GEO Series GSE93037. Homo sapiens. 83 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data
<p>This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed demographic history and regions under selection. Source code for genomic analyses is available at <a href="http://github.com/edegreef/NBW-resequencing">github.com/edegreef/NBW-resequencing</a>. Data uploaded here contain:</p> <ul> <li><strong>NBW_SNPS_filtered_demography_analyses.vcf.gz</strong> - Filtered SNPs for demography analyses. Filtered for quality (removed qual < 20, mq < 30, qd < 2, missingness > 0.4), non-biallelic sites, autosomes, structural variants, minimum scaffold length 100kb.</li> <li><strong>NBW_SNPS_filtered_imputed_haplotype_analyses.vcf.gz</strong> - Filtered and imputed SNPs for haplotype analyses. Filtered for quality, non-biallelic sites, autosomes, structural variants, max-missingness 0.1, minor allele count 2, minimum scaffold length 50kb.</li> </ul>
Data from: Climate change promotes allopatric divergence and ecological adaptation in a tropical montane bird. SNP data used to analyse the demographic history of Amblyornis papuensis.
<p>Environmental heterogeneity and Pleistocene glaciations have largely contributed to speciation and adaptation processes that have promoted genetic diversity of montane birds in temperate regions, but how these processes have influenced montane species in tropical regions is less known. We study these processes using a chromosome-level genome and comparative population genomics in Archbold's bowerbird (<i>Amblyornis papuensis</i>), a rare and poorly known montane bird in New Guinea. The analyses showed a deep divergence between the populations isolated in the eastern and western parts of the New Guinea Highlands, respectively. Using demographic model inference, we estimated that the two populations were part of the same population until ca. 140,000 years ago. They then diverged as the warmer climate in the Eemian interglacial forced them to retreat to higher elevations, which also led to decreasing population sizes. Subsequently, the two isolated populations evolved considerable phenotypic differences, particularly in body size, and in accordance with this, we observed strong divergent selection in genes related to body development. The phenotypic and genomic differences are likely a response to heterogenic environmental conditions in their respective habitats.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.