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Figure 2. A–D in Endangered White-spotted Ketsi Blue butterfly, Lepidochrysops ketsi leucomacula, in KwaZulu-Natal
Figure 2. A–D, female White-spotted Ketsi Blue butterflies, Lepidochrysops ketsi leucomacula, ovipositing on the hostplant Selago tarachodes Hilliard. (Photos by the authors.)
Data from: Understanding species boundaries that arise from complex histories: Gene flow across the speciation continuum in the spotted whiptail lizards
<p>Gene flow between diverging lineages challenges the resolution of species boundaries and the understanding of evolutionary history in recent radiations. Here, we integrate phylogenetic and coalescent tools to resolve reticulate patterns of diversification and use a perspective focused on evolutionary mechanisms to distinguish interspecific and intraspecific taxonomic variation. We use this approach to resolve the systematics for one of the most intensively studied but difficult to understand groups of reptiles: the spotted whiptail lizards of the genus <em>Aspidoscelis </em>(<em>A. gularis </em>complex). Whiptails contain the largest number of unisexual species known within any vertebrate group and the spotted whiptail complex has played a key role in the generation of this diversity through hybrid speciation. Understanding lineage boundaries and the evolutionary history of divergence and reticulation within this group is therefore key to understanding the generation of unisexual diversity in whiptails. Despite this importance, long-standing confusion about their systematics has impeded understanding of which gonochoristic species have contributed to the formation of unisexual lineages. Using reduced representation genomic data, we resolve patterns of divergence and gene flow within the spotted whiptails and clarify patterns of hybrid speciation. We find evidence that biogeographically structured ecological and environmental variation has been important in morphological and genetic diversification, as well as the maintenance of species boundaries in this system. Our study elucidates how gene flow among lineages and the continuous nature of speciation can bias the practice of species delimitation and lead taxonomists operating under different frameworks to different conclusions (here we propose that a two species arrangement best reflects our current understanding). In doing so, this study provides conceptual and methodological insights into approaches to resolving diversification patterns and species boundaries in rapid radiations with complex histories, as well as long-standing taxonomic challenges in the field of systematic biology.</p>
Fig. 2. Kimura 2 in First record of a spotted fever group Rickettsia sp. and Theileria annulata in Hyalomma dromedarii (Acari: Ixodidae) ticks in the United Arab Emirates
Fig. 2. Kimura 2-parameter distance Neighbor Joining (NJ) tree of 12 nucleotide sequences belonging to the genus Theileria. Codes denote the accession numbers of NCBI GenBank database. * Sequence from Al-Ain, UAE. Numbers next to branches are the percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) (Felsenstein 1985).
Fig. 1 in Survey for spotted-wing drosophila (Diptera: Drosophilidae) in the five-county nursery production region of middle Tennessee, USA
Fig. 1. Average trap captures of Drosophila suzukii males (gray triangles) and females (black circles) by week in 2013 and 2014. Weeks with an asterisk above them indicate significant differences (P <0.05) between the sexes by pair-wise LSMeans comparison in the negative binomial regression analysis (PROC GENMOD).
Fig. 2 in Survey for spotted-wing drosophila (Diptera: Drosophilidae) in the five-county nursery production region of middle Tennessee, USA
Fig. 2. Average trap captures of Drosophila suzukii in red (black circles) and yellow traps (gray triangles) by week in 2013 and 2014. No significant differences (P> 0.05) were found between the colors by pair-wise LSMeans comparison in the negative binomial regression analysis (PROC GENMOD).
Fig. 3 in Survey for spotted-wing drosophila (Diptera: Drosophilidae) in the five-county nursery production region of middle Tennessee, USA
Fig. 3. Adult Drosophila suzukii males (gray triangles) and females (black circles) captured from a yeast-baited deli cup trap in a plot of mixed Cornus species at the Otis L. Floyd Nursery Research Center during 2014 and 2015.
Fig. 2 in Karvav Kamak Mnt. - a new locality of the Spotted Nutcracker (Nucifraga caryocatactes (Linnaeus, 1758)) in Bulgaria
Fig. 2. Distribution of the Spotted Nutcracker (Nucifraga caryocatactes) in Bulgaria (after Nikolov, 2011). The locality in Karvav Kamak Mnt. is marked with red dot.
Fig. 1 in Karvav Kamak Mnt. - a new locality of the Spotted Nutcracker (Nucifraga caryocatactes (Linnaeus, 1758)) in Bulgaria
Fig. 1. The observed Spotted Nutcracker (Nucifraga caryocatactes) in the Karvav Kamak BG0001017 Natura 2000 SPA, 03.10.2021. Photo: Z. Boev.
Рис. 1. Самец пятнистого оΛеня на берегу р. Анюй; 01.06.2017. 19:44. Фото В. В. Пронкевича Fig. 1. A male of a spotted deer on the bank of the river Anyui; 06.01.2017. 19:44. Photo by V. V. Pronkevich in New data on the distribution of sika deer Cervus nippon Temminck, 1838 in the Lower Amur Region
Рис. 1. Самец пятнистого оΛеня на берегу р. Анюй; 01.06.2017. 19:44. Фото В. В. Пронкевича Fig. 1. A male of a spotted deer on the bank of the river Anyui; 06.01.2017. 19:44. Photo by V. V. Pronkevich
Fig. 2 in Factors influencing Dipylidium sp. infection in a free-ranging social carnivore, the spotted hyaena (Crocuta crocuta)
Fig. 2. The effect of prey abundance in spotted hyaena clan territories on the proportion of juveniles infected with Dipylidium sp.
Fig. 1 in Factors influencing Dipylidium sp. infection in a free-ranging social carnivore, the spotted hyaena (Crocuta crocuta)
Fig. 1. (a) A spotted hyaena communal den. (b) Dipylidium sp. egg capsule obtained from a gravid proglottid collected from a spotted hyaena faeces. (c) Spotted hyaena faeces with Dipylidium proglottids present on the surface.
Adapter sequences used for trimming of genomic sequences in the assembly of the Northern Spotted Owl (<i>Strix occidentalis caurina</i>) genome assembly version 1.0
<p>These files provide the sequences of the adapters used in the construction of the genomic libraries Hanna et al. (2017a) sequenced and used to assemble the Northern Spotted Owl (<em>Strix occidentalis caurina</em>) genome assembly version 1.0 (Hanna et al. 2017b). These files also contain relevant supplemental adapter sequences from the adapter files included with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p> <p><strong>SRR4011595_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011595. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" and "NexteraPE-PE.fa" files distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p> <p><strong>SRR4011596_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011596. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" and "NexteraPE-PE.fa" files distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p> <p><strong>SRR4011597_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011597. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" and "NexteraPE-PE.fa" files distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p> <p><strong>SRR4011614_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011614. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" and "NexteraPE-PE.fa" files distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p> <p><strong>SRR4011615_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011615. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" file distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p> <p><strong>SRR4011616_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011616. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" file distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).<br> <br> <strong>SRR4011617_adapters.fa</strong> : This FASTA format file contains the full length sequences of the adapters Hanna et al. (2017a) used to construct the genomic library they sequenced to produced the data uploaded as NCBI Sequence Read Archive (SRA) run accession SRR4011617. I have also included the partial adapter sequences provided in the "TruSeq3-PE-2.fa" file distributed with Trimmomatic version 0.36 (Bolger, Lohse & Usadel, 2014).</p>
Map. Historic map of the Vidarbha region showing find spots of Vākāṭaka inscriptions
<p>Map. Historic map of the Vidarbha region showing find spots of Vākāṭaka inscriptions</p>
A small dataset for demonstrating the benchmarking of spot-detection/spot-counting workflows with BIAFLOWS
<p>The images were generated by <a href="http://www.cs.tut.fi/sgn/csb/simcep/tool.html">SIMCEP</a>, a widefield fluorescence microscopy biological images simulator.</p> <p>The dataset contains 5 input images and 5 ground-truth images with the suffix _lbl.</p>
Helsinki Parking and Charging Spot data from bIoTope EU project
<p>Parking place and EV charging data model / data set created in bIoTope EU project (https://biotope-project.eu) for Helsinki Smart Equipment, Parking and Charging use case, as shown e.g. in the video at https://youtu.be/6DKz1URGamE</p> <p>The data is described using the Open Data Format (O-DF) standard (https://publications.opengroup.org/c14a), even though many features from the version 2.0 of that standard (to be published end 2019) have been used. </p>
Yellow parking spots in Trento detected with Virtual City Explorer
<p>Yellow parking spots detected with the <a href="https://zenodo.org/record/3540843#.XeVahHH7RhF">Virtual City Explorer</a>, using crowdworkers from MechanicalTurk. This is raw data, before any fusion takes place. Therefore, expect spots that have been detected multiple times.</p> <p>The dataset is distributed using <a href="https://github.com/smart-data-models/dataModel.Parking/blob/master/OnStreetParking/doc/spec.md">FiWare models format.</a></p> <p>Provenance and <a href="https://zenodo.org/record/3531962#.XeU1wHH7RhE">crowd-voc</a> description included.</p>
Fig. 2. A in Multiple infestations of gastrointestinal parasites - Probable cause for high mortality of Spot-billed Pelican (Pelecanus philippensis) at Kokrebellur Community Reserve, India
Fig. 2. A. Larvae of Contracaecum sp. in fish, B. Adult Contracaecum sp. worms in the pelican, C. Eggs of Echinostoma sp. in pelican fecal and water samples, D. Eggs of Contracaecum sp. in pelican fecal and water samples and E. Eggs of Opisthorchis viverrini in pelican fecal samples.
Figure 1 in First record of Spotted Angle butterfly Caprona agama agama (Moore, 1858) (Lepidoptera: Papilionoidea: Hesperiidae) from Bhoramdev Wildlife Sanctuary, Chhattisgarh, India
Figure 1. Study area of Bhoramdev Wildlife Sanctuary, Chhattisgarh, India. / Área de studio del Santuario de la Naturaleza Bhoramdev, Chhattisgarh, India.
Figures 2-5. Spotted Angle butterfly Caprona agama agama. 2. Over Ocimum americanum L. plant. 3 in First record of Spotted Angle butterfly Caprona agama agama (Moore, 1858) (Lepidoptera: Papilionoidea: Hesperiidae) from Bhoramdev Wildlife Sanctuary, Chhattisgarh, India
Figures 2-5. Spotted Angle butterfly Caprona agama agama. 2. Over Ocimum americanum L. plant. 3. Spotted Angle butterfly and other butterflies involved in mud puddling 4. Spotted Angle butterfly and other butterflies involved in mud puddling. 5. Sitting over a wooden block. / Mariposa de ángulo manchado Caprona agama agama. 2. Sobre la planta Ocimum americanum L. 3. Mariposa de ángulo manchado y otras mariposas reunidas en charcos de barro. 4. Mariposa de ángulo manchado y otras mariposas reunidas en charcos de barro. 5. Posada sobre un trozo de madera.
Figure 4 in Coexistence of Syrian Woodpecker Dendrocopos syriacus and Great Spotted Woodpecker Dendrocopos major in nonforest tree stands of the agricultural landscape in SE Poland
Figure 4. Frequency of the Syrian Woodpecker's (open dots and dashed line) and Great Spotted Woodpecker's (filled dots and continuous line) park occupancy depending on the area of the tree stand within the park.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.