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Fig. 4 in Characterization of the Plasmodium and Haemoproteus parasite community in temperate-tropical birds during spring migration
Fig. 4. Differences by foraging guild among infected birds in the probability of Haemoproteus versus Plasmodium infection adjusted for the significant predictors in the model. Single asterisks with brackets beneath denote significant differences between categories.
Fig. 3 in Characterization of the Plasmodium and Haemoproteus parasite community in temperate-tropical birds during spring migration
Fig. 3. Differences by wintering ground among infected birds in the probability of Haemoproteus versus Plasmodium infection adjusted for the significant predictors in the model. Single asterisks with brackets beneath denote significant differences between categories.
Fig. 2 in Characterization of the Plasmodium and Haemoproteus parasite community in temperate-tropical birds during spring migration
Fig. 2. Differences by avian family in the probabilities of a) infection versus non-infection with a Haemosporidian parasite and b) among infected birds, the Plasmodium versus Haemoproteus infection adjusted for the significant predictors in the respective models. Single asterisks with brackets beneath denote significant differences between families.
Fig. 1 in Characterization of the Plasmodium and Haemoproteus parasite community in temperate-tropical birds during spring migration
Fig. 1. Location of field site in Clive Runnells Family Mad Island Marsh Preserve in Texas, USA (Image credit: Google Earth).
Datasets: Population genomics and mitochondrial DNA reveal cryptic diversity in North American Spring Cavefishes (Amblyopsidae, Forbesichthys)
<p>Forbesichthys_allsites.vcf: Dataset in VCF format used to perform Effective Population Size estimation.</p> <p>Forbesichthys_SNPs_NoLD.vcf: Dataset in VCF format used to perform PCA, fastStrucuture, and phylogenetic analyses.</p> <p>Files with extension .sfs contain site spectrum frequencies generated with the program easySFS.py.</p>
Linked collectors and determiners for: First Canadian record of the water mite Thermacarus nevadensis Marshall, 1928 (Arachnida: Acariformes: Hydrachnidiae: Thermacaridae) from hot springs in British Columbia.
Natural history specimen data linked to collectors and determiners held within, "First Canadian record of the water mite Thermacarus nevadensis Marshall, 1928 (Arachnida: Acariformes: Hydrachnidiae: Thermacaridae) from hot springs in British Columbia". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/643d14c4-29be-4357-bbc6-ff2e5f88d55a">https://bionomia.net/dataset/643d14c4-29be-4357-bbc6-ff2e5f88d55a</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/643d14c4-29be-4357-bbc6-ff2e5f88d55a">https://gbif.org/dataset/643d14c4-29be-4357-bbc6-ff2e5f88d55a</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Malenka Murvoshi, A New Species Of Stonefly From The Spring Mountains Of Southern Nevada (Plecoptera: Nemouridae).
Natural history specimen data linked to collectors and determiners held within, "Malenka Murvoshi, A New Species Of Stonefly From The Spring Mountains Of Southern Nevada (Plecoptera: Nemouridae)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/db69c0c7-2394-4784-824e-d14cf1414707">https://bionomia.net/dataset/db69c0c7-2394-4784-824e-d14cf1414707</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/db69c0c7-2394-4784-824e-d14cf1414707">https://gbif.org/dataset/db69c0c7-2394-4784-824e-d14cf1414707</a>. Formatted as a Frictionless Data package.
Hull Springs Dock YSI Station 2021-06-09 to 2021-07-15
<pre># General Metadata for Hull Springs Dock-YSI Sampling Station ## Files Specific metadata for each deployment can be found as text files with the file format of: HS_YSI_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. ## File Created * 2021-07-14 by KF ## File Modified ## Description These data are from the YSI EXO3 sampling station in Aimes Creek near the lab dock (38.125367, -76.659537). All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The sensors are sampled every 15 minutes ### Measurements Parameters, units, and Variable Names * date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * date - the date that the record was collected ( * time - the time that the record was collected ( * site_name - the ID name provided by the KOR software. * unit_ID - the sonde identification number. * user_ID - the user that created the sampling template. * Temp_dC - the water temperature in degrees C. * DO_perc - the dissolved oxygen percent saturation (%). * DO_percL - the "local" dissolved oxygen percent saturation where the calibration is locally always 100% saturated independent of the barometric pressure (%). * DO_mg-L - the concentration of dissolved oxygen (mg/L). * SPC_uS-cm - the specific conductance (uS/cm). * C_uS-cm - the conductivity (uS/cm). * nLFC_uS-cm * TDS_mg-L - the total dissolved solids (mg/L). * SAL_PSU - the salinity of the water (PSU). * pH - the pH of the water. * pH_mV - the millivolt measurement of the pH meter (mV). * FNU - the turbidity of the water (FNU). * TSS_mg-L - the total suspended solids (mg/L). * BGA_PC_RFU - the phycocyanin fluorescence level which is an indicator of blue-green algae (RFU). * BGC_PC_ug-L - the concentration of phycocyanin in the water, which is an indicator of blue-green algae (ug/L). * Chl_RFU - the chlorophyll fluorescence level, which is an indicator of phytoplankton biomass (RFU). * Chl_ug-L - the concentration of chlorophyll in the water, which is an indicator of phytoplankton biomass (ug/L). * fDOM_RFU - the fluorescent DOM fluorescence level (RFU). * fDOM_QSU - the standardized fluorescent DOM concentration (QSU). * Wiper_V - the voltage output of the wiper (V). * Cabel_V - the voltage output of the cable (V). * Batt_V - the voltage output of the internal batteries (V).</pre>
Hull Springs Wetland Water Depth and Temperature Data from 2021-06-11 to 2021-07-16
<pre># General Metadata for Hull Springs Restored Wetland Sampling Station ## Files Specific metadata for each deployment and sensor can be found as text files with the file format of: HS_wetland_DO_YYYY-MM-DD_metadata.txt HS_wetland_pressure_trans_YYYY-MM-DD_metadata.txt HS_wetland_CT_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. Details on how the data were cleaned and variables created can be found at in the cleaning scripts on Gitlab [https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts](https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts). ## File Created * 2021-06-16 by KF ## File Modified * 2021-07-22 by KF - added general metadata for the pressure transducer and the CT sensor. ## Description These data are from the sampling station in the restored wetland at Hull Springs. The sensors are in the NE corner of the shallow pond portion of the restored wetland (38.119289, -76.667252). All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The specific at each site are: * Temperature (dC) and Dissolved Oxygen (mg/l) are collected with a Onset HOBO U26-001 Dissolved Oxygen Logger * Temperature (dC) and Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger * Temperature (dC) and Conductivity are collected with an Onset HOBO U24-001 Conductivity Logger The sensors are sampled every 15 minutes ## Measurement Parameters, units, and Variable Names * date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * date.time.adj - the date and time of the pressure measurement that was adjusted to match the barometric pressure measurement from the weather station. * observation - the incremental number of each observation * timestamp - the data and time that the record was collected, as reported by the data logger (MM/DD/YY HH:MM:SS A/PM) * DO - the concentration of dissolved oxygen in the water (mg/L) * Temp - the temperature of the water (dC) * Pressure - the pressure recorded by the underwater pressure transducer (kPa) * press_mmHg - the pressure recorded by the underwater pressure transducer (mm Hg) * BP_mmHg - the barometric pressure recorded by the weather station at the Yellow House (mm Hg) * Z - the depth of the water at the wetland sampling station (cm) * Low_Range_CT - the conductivity read from 0 - 2500 uS/cm (uS/cm) * Full_Range_CT - the conductivity read from 0 - 15000 uS/cm (mmHg) </pre>
Hull Springs Weather Data from 2021-06-12 to 2021-07-16
<pre># General Metadata for Hull Springs Farm Atmospheric Sampling Station ## Files Specific metadata for each deployment can be found as text files with the file format of: HSF_weather_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. ## File Created * 2019-10-27 by KF ## File Modified ## Description These data are from a weather station installed at Hull Springs Farm near the "Yellow House" (38.121683, -76.666781) as part of the Longwood Environmental Observatory. All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The specific at each site are: * Barometric Pressure (mmHg) - Campbell Scientific CS100 Barometric Pressure Sensor * Light Flux Density (kW/m^2) - Campbell Scientific Pyranometer CS300 * Light Total Flux (kJ/m^2) - Campbell Scientific Pyranometer CS300 * Rainfall (mm) - Texas Electronics TE525 Tipping Bucket * Temperature (dC) - Campbell Scientific CS215 Temperature and Relative Humidity Sensor * Relative Humidity (%) - Campbell Scientific CS215 Temperature and Relative Humidity Sensor * Wind Speed (m/s) - RM Young 05103 Wind Speed and Direction Sensor * Wind Direction (degrees from true N) - RM Young 05103 Wind Speed and Direction Sensor * Data Collection - Campbell Scientific CR200 Data Logger * The sensors are sampled every 15 minutes ## Measurement Parameters, units, and Variable Names * DATE - the date that the record was collected (YYYY-MM-DD) * TIMESTAMP - the date and time that the record was collected (YYYY-MM-DD HH:MM:SS) * RECORD.x - a unique identifying number provided from the data logger for table 1 from the original downloaded data. * BattV_Avg - The average battery voltage (Volts) * BattV - The battery voltage at the time of the sampling (Volts) * BP_mmHg_Avg - The average barometric pressure over the sampling interval (mmHg) * BP_mmHg_Std - The standard deviation of the average barometric pressure (mmHg) * BP_mmHg - The barometric pressure at the time of the sampling (mmHg) * Rain_mm_Tot - The total rainfall during the sampling interval (mm) * AirTC_Avg - The average air temperature during the sampling interval (dC) * AirTC_Std - The standard deviation of the average air temperature (dC) * AirTC - the air temperature at the time of the sampling (dC) * RH - the relative humidity at the time of the sampling (%) * RH_Min - the minimum relative humidity recorded (%) * RH_TMn - the time that the minimum relative humidity measurement occurred (YYYY-MM-DD HH:MM:SS) * RH_Max - the maximum relative humidity recorded (%) * RH_TMx - the time that the maximum relative humidity measurement occurred (YYYY-MM-DD HH:MM:SS) * RECORD.y - a unique identifying number provided from the data logger for table 1 from the original downloaded data. * BattV_Min - the minimum battery voltage (Volts) * SlrkW_Avg - the average light flux density during the sampling interval (kW/m^2) * SlrkW_Std - the standard deviation of the average light flux density (kW/m^2) * SlrkW - the light flux density at the time of the sampling (kW/m^2) * SlrMJ_Tot - the total light flux (MJ/m^2) * WS_ms_Avg - the average wind speed during the sampling interval (m/s) * WS_ms_Std - the standard deviation of the average wind speed (m/s) * WS_ms - the wind speed at the time of the sampling event (m/s) * WindDir - the wind direction at the time of the sampling event (degrees from true N) * WS_ms_S_WVT - the average wind speed over the previous 15 minutes (m/s) * WindDir_D1_WVT - the average wind direction over the previous 15 minutes (degrees from true N) * WindDir_SD1_WVT - the standard deviation of the average wind direction over the previous 15 minutes (degrees from true N) </pre>
Hull Springs Wetland Dissolved Oxygen and Water Temperature Data from 2021-05-04 to 2021-06-11
<pre># General Metadata for Hull Springs Restored Wetland Sampling Station ## Files Specific metadata for each deployment and sensor can be found as text files with the file format of: HS_wetland_DO_YYYY-MM-DD_metadata.txt HS_wetland_pressure_trans_YYYY-MM-DD_metadata.txt HS_wetland_CT_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. Details on how the data were cleaned and variables created can be found at in the cleaning scripts on Gitlab [https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts](https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts). ## File Created * 2021-06-16 by KF ## File Modified * 2021-07-22 by KF - added general metadata for the pressure transducer and the CT sensor. ## Description These data are from the sampling station in the restored wetland at Hull Springs. The sensors are in the NE corner of the shallow pond portion of the restored wetland (38.119289, -76.667252). All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The specific at each site are: * Temperature (dC) and Dissolved Oxygen (mg/l) are collected with a Onset HOBO U26-001 Dissolved Oxygen Logger * Temperature (dC) and Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger * Temperature (dC) and Conductivity are collected with an Onset HOBO U24-001 Conductivity Logger The sensors are sampled every 15 minutes ## Measurement Parameters, units, and Variable Names * date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * date.time.adj - the date and time of the pressure measurement that was adjusted to match the barometric pressure measurement from the weather station. * observation - the incremental number of each observation * timestamp - the data and time that the record was collected, as reported by the data logger (MM/DD/YY HH:MM:SS A/PM) * DO - the concentration of dissolved oxygen in the water (mg/L) * Temp - the temperature of the water (dC) * Pressure - the pressure recorded by the underwater pressure transducer (mmHg) * Low_Range_CT - the conductivity read from 0 - 2500 uS/cm (uS/cm) * Full_Range_CT - the conductivity read from 0 - 15000 uS/cm (mmHg) </pre>
Hull Springs Wetland Conductivity and Water Temperature Data from 2021-05-04 to 2021-06-11
<pre># General Metadata for Hull Springs Restored Wetland Sampling Station ## Files Specific metadata for each deployment and sensor can be found as text files with the file format of: HS_wetland_DO_YYYY-MM-DD_metadata.txt HS_wetland_pressure_trans_YYYY-MM-DD_metadata.txt HS_wetland_CT_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. Details on how the data were cleaned and variables created can be found at in the cleaning scripts on Gitlab [https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts](https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts). ## File Created * 2021-06-16 by KF ## File Modified * 2021-07-22 by KF - added general metadata for the pressure transducer and the CT sensor. ## Description These data are from the sampling station in the restored wetland at Hull Springs. The sensors are in the NE corner of the shallow pond portion of the restored wetland (38.119289, -76.667252). All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The specific at each site are: * Temperature (dC) and Dissolved Oxygen (mg/l) are collected with a Onset HOBO U26-001 Dissolved Oxygen Logger * Temperature (dC) and Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger * Temperature (dC) and Conductivity are collected with an Onset HOBO U24-001 Conductivity Logger The sensors are sampled every 15 minutes ## Measurement Parameters, units, and Variable Names * date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * date.time.adj - the date and time of the pressure measurement that was adjusted to match the barometric pressure measurement from the weather station. * observation - the incremental number of each observation * timestamp - the data and time that the record was collected, as reported by the data logger (MM/DD/YY HH:MM:SS A/PM) * DO - the concentration of dissolved oxygen in the water (mg/L) * Temp - the temperature of the water (dC) * Pressure - the pressure recorded by the underwater pressure transducer (mmHg) * Low_Range_CT - the conductivity read from 0 - 2500 uS/cm (uS/cm) * Full_Range_CT - the conductivity read from 0 - 15000 uS/cm (mmHg) </pre>
Hull Springs Wetland Water Depth and Water Temperature Data from 2021-05-04 to 2021-06-11
<pre># General Metadata for Hull Springs Restored Wetland Sampling Station ## Files Specific metadata for each deployment and sensor can be found as text files with the file format of: HS_wetland_DO_YYYY-MM-DD_metadata.txt HS_wetland_pressure_trans_YYYY-MM-DD_metadata.txt HS_wetland_CT_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. Details on how the data were cleaned and variables created can be found at in the cleaning scripts on Gitlab [https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts](https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts). ## File Created * 2021-06-16 by KF ## File Modified * 2021-07-22 by KF - added general metadata for the pressure transducer and the CT sensor. ## Description These data are from the sampling station in the restored wetland at Hull Springs. The sensors are in the NE corner of the shallow pond portion of the restored wetland (38.119289, -76.667252). All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The specific at each site are: * Temperature (dC) and Dissolved Oxygen (mg/l) are collected with a Onset HOBO U26-001 Dissolved Oxygen Logger * Temperature (dC) and Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger * Temperature (dC) and Conductivity are collected with an Onset HOBO U24-001 Conductivity Logger The sensors are sampled every 15 minutes ## Measurement Parameters, units, and Variable Names * date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * date.time.adj - the date and time of the pressure measurement that was adjusted to match the barometric pressure measurement from the weather station. * observation - the incremental number of each observation * timestamp - the data and time that the record was collected, as reported by the data logger (MM/DD/YY HH:MM:SS A/PM) * DO - the concentration of dissolved oxygen in the water (mg/L) * Temp - the temperature of the water (dC) * Pressure - the pressure recorded by the underwater pressure transducer (mmHg) * Low_Range_CT - the conductivity read from 0 - 2500 uS/cm (uS/cm) * Full_Range_CT - the conductivity read from 0 - 15000 uS/cm (mmHg) </pre>
Hull Springs Wetland Dissolved Oxygen and Water Temperature Data from 2021-06-11 to 2021-07-16
<pre># General Metadata for Hull Springs Restored Wetland Sampling Station ## Files Specific metadata for each deployment and sensor can be found as text files with the file format of: HS_wetland_DO_YYYY-MM-DD_metadata.txt HS_wetland_pressure_trans_YYYY-MM-DD_metadata.txt HS_wetland_CT_YYYY-MM-DD_metadata.txt Where YYYY-MM-DD is the date that the sampling period ended. NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning. Details on how the data were cleaned and variables created can be found at in the cleaning scripts on Gitlab [https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts](https://gitlab.com/leo147/leo/-/tree/master/lab_notebook/data_processing/cleaning_scripts). ## File Created * 2021-06-16 by KF ## File Modified * 2021-07-22 by KF - added general metadata for the pressure transducer and the CT sensor. ## Description These data are from the sampling station in the restored wetland at Hull Springs. The sensors are in the NE corner of the shallow pond portion of the restored wetland (38.119289, -76.667252). All data are CC-BY and should be cited using the DOI available at https://zenodo.org/communities/leo/ ## Station Specifics The specific at each site are: * Temperature (dC) and Dissolved Oxygen (mg/l) are collected with a Onset HOBO U26-001 Dissolved Oxygen Logger * Temperature (dC) and Pressure (mmHg) are collected with an Onset HOBO U20-001-01 Water Level Logger * Temperature (dC) and Conductivity are collected with an Onset HOBO U24-001 Conductivity Logger The sensors are sampled every 15 minutes ## Measurement Parameters, units, and Variable Names * date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS) * date.time.adj - the date and time of the pressure measurement that was adjusted to match the barometric pressure measurement from the weather station. * observation - the incremental number of each observation * timestamp - the data and time that the record was collected, as reported by the data logger (MM/DD/YY HH:MM:SS A/PM) * DO - the concentration of dissolved oxygen in the water (mg/L) * Temp - the temperature of the water (dC) * Pressure - the pressure recorded by the underwater pressure transducer (mmHg) * Low_Range_CT - the conductivity read from 0 - 2500 uS/cm (uS/cm) * Full_Range_CT - the conductivity read from 0 - 15000 uS/cm (mmHg) </pre>
Hull Springs Weather Data from 2021-07-16 to 2021-08-14
<p>General Metadata for Hull Springs Farm Atmospheric Sampling Station</p> <p>Files</p> <p>Specific metadata for each deployment can be found as text files with the file format of:</p> <pre><code>HSF_weather_YYYY-MM-DD_metadata.txt</code></pre> <p>Where YYYY-MM-DD is the date that the sampling period ended.</p> <p>File Created</p> <ul> <li>2019-10-27 by KF</li> </ul> <p>File Modified</p> <p>Description</p> <p>These data are from a weather station installed at Hull Springs Farm near the "Yellow House" (38.121683, -76.666781) as part of the Longwood Environmental Observatory.</p> <p>All data are CC-BY and should be cited using the DOI available at <a href="https://zenodo.org/communities/leo/">https://zenodo.org/communities/leo/</a></p> <p>Station Specifics</p> <p>The specific at each site are:</p> <pre><code>* Barometric Pressure (mmHg) - Campbell Scientific CS100 Barometric Pressure Sensor * Light Flux Density (kW/m^2) - Campbell Scientific Pyranometer CS300 * Light Total Flux (kJ/m^2) - Campbell Scientific Pyranometer CS300 * Rainfall (mm) - Texas Electronics TE525 Tipping Bucket * Temperature (dC) - Campbell Scientific CS215 Temperature and Relative Humidity Sensor * Relative Humidity (%) - Campbell Scientific CS215 Temperature and Relative Humidity Sensor * Wind Speed (m/s) - RM Young 05103 Wind Speed and Direction Sensor * Wind Direction (degrees from true N) - RM Young 05103 Wind Speed and Direction Sensor * Data Collection - Campbell Scientific CR200 Data Logger * The sensors are sampled every 15 minutes</code></pre> <p>Measurement Parameters, units, and Variable Names</p> <pre><code>* DATE - the date that the record was collected (YYYY-MM-DD) * TIMESTAMP - the date and time that the record was collected (YYYY-MM-DD HH:MM:SS) * RECORD.x - a unique identifying number provided from the data logger for table 1 from the original downloaded data. * BattV_Avg - The average battery voltage (Volts) * BattV - The battery voltage at the time of the sampling (Volts) * BP_mmHg_Avg - The average barometric pressure over the sampling interval (mmHg) * BP_mmHg_Std - The standard deviation of the average barometric pressure (mmHg) * BP_mmHg - The barometric pressure at the time of the sampling (mmHg) * Rain_mm_Tot - The total rainfall during the sampling interval (mm) * AirTC_Avg - The average air temperature during the sampling interval (dC) * AirTC_Std - The standard deviation of the average air temperature (dC) * AirTC - the air temperature at the time of the sampling (dC) * RH - the relative humidity at the time of the sampling (%) * RH_Min - the minimum relative humidity recorded (%) * RH_TMn - the time that the minimum relative humidity measurement occurred (YYYY-MM-DD HH:MM:SS) * RH_Max - the maximum relative humidity recorded (%) * RH_TMx - the time that the maximum relative humidity measurement occurred (YYYY-MM-DD HH:MM:SS) * RECORD.y - a unique identifying number provided from the data logger for table 1 from the original downloaded data. * BattV_Min - the minimum battery voltage (Volts) * SlrkW_Avg - the average light flux density during the sampling interval (kW/m^2) * SlrkW_Std - the standard deviation of the average light flux density (kW/m^2) * SlrkW - the light flux density at the time of the sampling (kW/m^2) * SlrMJ_Tot - the total light flux (MJ/m^2) * WS_ms_Avg - the average wind speed during the sampling interval (m/s) * WS_ms_Std - the standard deviation of the average wind speed (m/s) * WS_ms - the wind speed at the time of the sampling event (m/s) * WindDir - the wind direction at the time of the sampling event (degrees from true N) * WS_ms_S_WVT - the average wind speed over the previous 15 minutes (m/s) * WindDir_D1_WVT - the average wind direction over the previous 15 minutes (degrees from true N) * WindDir_SD1_WVT - the standard deviation of the average wind direction over the previous 15 minutes (degrees from true N)</code></pre>
Dataset: Impact of salinization on lake stratification and spring mixing v1.0 L&O Letters
<p>Scripts, model configurations and outputs to process the data and recreate the figures from Ladwig, R., Rock, L.A, Dugan, H.A. (-): Impact of salinization on lake stratification and spring mixing. This repository includes the setup and output from the lake model ensemble (GLM, GOTM, Simstrat) ran on the lakes Mendota and Monona. Scripts to run the models are located under /numerical and the scripts to process the results for the discussion of the paper are in the top main repository. The scripts to derive the theoretical solution are located under /analytical. Buoy monitoring data are located under /fieldmonitoring. The final figures are located under /figs_HD.</p>
Hull Springs Dock YSI Station 2021-07-15 to 2021-08-15
<p>General Metadata for Hull Springs Dock-YSI Sampling Station</p> <p>Files</p> <p>Specific metadata for each deployment can be found as text files with the file format of:</p> <pre><code>HS_YSI_YYYY-MM-DD_metadata.txt HS_dock_pressure_trans_YYYY-MM-DD_metadata.txt</code></pre> <p>Where YYYY-MM-DD is the date that the sampling period ended.</p> <p>NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning.</p> <p>File Created</p> <ul> <li>2021-07-14 by KF</li> </ul> <p>File Modified</p> <ul> <li>2021-07-22 by KF - added metadata for pressure transducer</li> </ul> <p>Description</p> <p>These data are from the sampling station in Aimes Creek on the Camp House dock (38.125367, -76.659537).</p> <pre><code>* Physical and chemical water data are collected with a YSI EXO2 sonde. * Temperature (dC) and Pressure (KPa) are collected with an Onset HOBO U20-001-01-Ti Water Level Logger</code></pre> <p>All data are CC-BY and should be cited using the DOI available at <a href="https://zenodo.org/communities/leo/">https://zenodo.org/communities/leo/</a></p> <p>Station Specifics</p> <p>The sensors are sampled every 15 minutes</p> <p>Measurements Parameters, units, and Variable Names</p> <ul> <li>date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS)</li> <li>date.time.adj - the date and time that the pressure was measured adjusted to match the time that barometric pressure was collected. (YYYY-MM-DD HH:MM:SS)</li> <li>observation - the number of the observation.</li> <li>timestamp - the date and time as reported by the data logger (MM/DD/YY HH:MM:SS AM/PM)</li> <li>date - the date that the record was collected (MM/DD/YYYY)</li> <li>time - the time that the record was collected (HH:MM:SS)</li> <li>site_name - the ID name provided by the KOR software.</li> <li>unit_ID - the sonde identification number.</li> <li>user_ID - the user that created the sampling template.</li> <li>Temp_dC - the water temperature in degrees C.</li> <li>DO_perc - the dissolved oxygen percent saturation (%).</li> <li>DO_percL - the "local" dissolved oxygen percent saturation where the calibration is locally always 100% saturated independent of the barometric pressure (%).</li> <li>DO_mg-L - the concentration of dissolved oxygen (mg/L).</li> <li>SPC_uS-cm - the specific conductance (uS/cm).</li> <li>C_uS-cm - the conductivity (uS/cm).</li> <li>nLFC_uS-cm</li> <li>TDS_mg-L - the total dissolved solids (mg/L).</li> <li>SAL_PSU - the salinity of the water (PSU).</li> <li>pH - the pH of the water.</li> <li>pH_mV - the millivolt measurement of the pH meter (mV).</li> <li>FNU - the turbidity of the water (FNU).</li> <li>TSS_mg-L - the total suspended solids (mg/L).</li> <li>BGA_PC_RFU - the phycocyanin fluorescence level which is an indicator of blue-green algae (RFU).</li> <li>BGC_PC_ug-L - the concentration of phycocyanin in the water, which is an indicator of blue-green algae (ug/L).</li> <li>Chl_RFU - the chlorophyll fluorescence level, which is an indicator of phytoplankton biomass (RFU).</li> <li>Chl_ug-L - the concentration of chlorophyll in the water, which is an indicator of phytoplankton biomass (ug/L).</li> <li>fDOM_RFU - the fluorescent DOM fluorescence level (RFU).</li> <li>fDOM_QSU - the standardized fluorescent DOM concentration (QSU).</li> <li>Wiper_V - the voltage output of the wiper (V).</li> <li>Cabel_V - the voltage output of the cable (V).</li> <li>Batt_V - the voltage output of the internal batteries (V).</li> <li>Pressure - the pressure of the water above the pressure transducer (KPa)</li> <li>Temp - the water temperature reported by the pressure transducer (dC)</li> <li>press_mmHg - the pressure of the water above the pressure transducer (mm Hg)</li> <li>BP_mmHg - the barometric pressure recorded by the weather station at the Yellow House (mm Hg)</li> <li>Z_press_trans - the depth of the water above the pressure transducer (cm)</li> <li>Z - the depth of the water above the sediments (cm)</li> </ul>
Hull Springs Dock YSI Station 2021-08-15 to 2021-09-18
<p>General Metadata for Hull Springs Dock-YSI Sampling Station</p> <p>Files</p> <p>Specific metadata for each deployment can be found as text files with the file format of:</p> <pre><code>HS_YSI_YYYY-MM-DD_metadata.txt HS_dock_pressure_trans_YYYY-MM-DD_metadata.txt</code></pre> <p>Where YYYY-MM-DD is the date that the sampling period ended.</p> <p>NOTE: The metadata in the above file is collected from the data logger and does not have all of fields present in the final data set, because some were created during data cleaning.</p> <p>File Created</p> <ul> <li>2021-07-14 by KF</li> </ul> <p>File Modified</p> <ul> <li>2021-07-22 by KF - added metadata for pressure transducer</li> </ul> <p>Description</p> <p>These data are from the sampling station in Aimes Creek on the Camp House dock (38.125367, -76.659537).</p> <pre><code>* Physical and chemical water data are collected with a YSI EXO2 sonde. * Temperature (dC) and Pressure (KPa) are collected with an Onset HOBO U20-001-01-Ti Water Level Logger</code></pre> <p>All data are CC-BY and should be cited using the DOI available at <a href="https://zenodo.org/communities/leo/">https://zenodo.org/communities/leo/</a></p> <p>Station Specifics</p> <p>The sensors are sampled every 15 minutes</p> <p>Measurements Parameters, units, and Variable Names</p> <ul> <li>date.time - the date and time that the record was collected, reported in POSIX standard time (YYYY-MM-DD HH:MM:SS)</li> <li>date.time.adj - the date and time that the pressure was measured adjusted to match the time that barometric pressure was collected. (YYYY-MM-DD HH:MM:SS)</li> <li>observation - the number of the observation.</li> <li>timestamp - the date and time as reported by the data logger (MM/DD/YY HH:MM:SS AM/PM)</li> <li>date - the date that the record was collected (MM/DD/YYYY)</li> <li>time - the time that the record was collected (HH:MM:SS)</li> <li>site_name - the ID name provided by the KOR software.</li> <li>unit_ID - the sonde identification number.</li> <li>user_ID - the user that created the sampling template.</li> <li>Temp_dC - the water temperature in degrees C.</li> <li>DO_perc - the dissolved oxygen percent saturation (%).</li> <li>DO_percL - the "local" dissolved oxygen percent saturation where the calibration is locally always 100% saturated independent of the barometric pressure (%).</li> <li>DO_mg-L - the concentration of dissolved oxygen (mg/L).</li> <li>SPC_uS-cm - the specific conductance (uS/cm).</li> <li>C_uS-cm - the conductivity (uS/cm).</li> <li>nLFC_uS-cm</li> <li>TDS_mg-L - the total dissolved solids (mg/L).</li> <li>SAL_PSU - the salinity of the water (PSU).</li> <li>pH - the pH of the water.</li> <li>pH_mV - the millivolt measurement of the pH meter (mV).</li> <li>FNU - the turbidity of the water (FNU).</li> <li>TSS_mg-L - the total suspended solids (mg/L).</li> <li>BGA_PC_RFU - the phycocyanin fluorescence level which is an indicator of blue-green algae (RFU).</li> <li>BGC_PC_ug-L - the concentration of phycocyanin in the water, which is an indicator of blue-green algae (ug/L).</li> <li>Chl_RFU - the chlorophyll fluorescence level, which is an indicator of phytoplankton biomass (RFU).</li> <li>Chl_ug-L - the concentration of chlorophyll in the water, which is an indicator of phytoplankton biomass (ug/L).</li> <li>fDOM_RFU - the fluorescent DOM fluorescence level (RFU).</li> <li>fDOM_QSU - the standardized fluorescent DOM concentration (QSU).</li> <li>Wiper_V - the voltage output of the wiper (V).</li> <li>Cabel_V - the voltage output of the cable (V).</li> <li>Batt_V - the voltage output of the internal batteries (V).</li> <li>Pressure - the pressure of the water above the pressure transducer (KPa)</li> <li>Temp - the water temperature reported by the pressure transducer (dC)</li> <li>press_mmHg - the pressure of the water above the pressure transducer (mm Hg)</li> <li>BP_mmHg - the barometric pressure recorded by the weather station at the Yellow House (mm Hg)</li> <li>Z_press_trans - the depth of the water above the pressure transducer (cm)</li> <li>Z - the depth of the water above the sediments (cm)</li> </ul>
Hull Springs Weather Data from 2021-08-14 to 2021-08-23
<p>General Metadata for Hull Springs Farm Atmospheric Sampling Station</p> <p>Files</p> <p>Specific metadata for each deployment can be found as text files with the file format of:</p> <pre><code>HSF_weather_YYYY-MM-DD_metadata.txt</code></pre> <p>Where YYYY-MM-DD is the date that the sampling period ended.</p> <p>File Created</p> <ul> <li>2019-10-27 by KF</li> </ul> <p>File Modified</p> <p>Description</p> <p>These data are from a weather station installed at Hull Springs Farm near the "Yellow House" (38.121683, -76.666781) as part of the Longwood Environmental Observatory.</p> <p>All data are CC-BY and should be cited using the DOI available at <a href="https://zenodo.org/communities/leo/">https://zenodo.org/communities/leo/</a></p> <p>Station Specifics</p> <p>The specific at each site are:</p> <pre><code>* Barometric Pressure (mmHg) - Campbell Scientific CS100 Barometric Pressure Sensor * Light Flux Density (kW/m^2) - Campbell Scientific Pyranometer CS300 * Light Total Flux (kJ/m^2) - Campbell Scientific Pyranometer CS300 * Rainfall (mm) - Texas Electronics TE525 Tipping Bucket * Temperature (dC) - Campbell Scientific CS215 Temperature and Relative Humidity Sensor * Relative Humidity (%) - Campbell Scientific CS215 Temperature and Relative Humidity Sensor * Wind Speed (m/s) - RM Young 05103 Wind Speed and Direction Sensor * Wind Direction (degrees from true N) - RM Young 05103 Wind Speed and Direction Sensor * Data Collection - Campbell Scientific CR200 Data Logger * The sensors are sampled every 15 minutes</code></pre> <p>Measurement Parameters, units, and Variable Names</p> <pre><code>* DATE - the date that the record was collected (YYYY-MM-DD) * TIMESTAMP - the date and time that the record was collected (YYYY-MM-DD HH:MM:SS) * RECORD.x - a unique identifying number provided from the data logger for table 1 from the original downloaded data. * BattV_Avg - The average battery voltage (Volts) * BattV - The battery voltage at the time of the sampling (Volts) * BP_mmHg_Avg - The average barometric pressure over the sampling interval (mmHg) * BP_mmHg_Std - The standard deviation of the average barometric pressure (mmHg) * BP_mmHg - The barometric pressure at the time of the sampling (mmHg) * Rain_mm_Tot - The total rainfall during the sampling interval (mm) * AirTC_Avg - The average air temperature during the sampling interval (dC) * AirTC_Std - The standard deviation of the average air temperature (dC) * AirTC - the air temperature at the time of the sampling (dC) * RH - the relative humidity at the time of the sampling (%) * RH_Min - the minimum relative humidity recorded (%) * RH_TMn - the time that the minimum relative humidity measurement occurred (YYYY-MM-DD HH:MM:SS) * RH_Max - the maximum relative humidity recorded (%) * RH_TMx - the time that the maximum relative humidity measurement occurred (YYYY-MM-DD HH:MM:SS) * RECORD.y - a unique identifying number provided from the data logger for table 1 from the original downloaded data. * BattV_Min - the minimum battery voltage (Volts) * SlrkW_Avg - the average light flux density during the sampling interval (kW/m^2) * SlrkW_Std - the standard deviation of the average light flux density (kW/m^2) * SlrkW - the light flux density at the time of the sampling (kW/m^2) * SlrMJ_Tot - the total light flux (MJ/m^2) * WS_ms_Avg - the average wind speed during the sampling interval (m/s) * WS_ms_Std - the standard deviation of the average wind speed (m/s) * WS_ms - the wind speed at the time of the sampling event (m/s) * WindDir - the wind direction at the time of the sampling event (degrees from true N) * WS_ms_S_WVT - the average wind speed over the previous 15 minutes (m/s) * WindDir_D1_WVT - the average wind direction over the previous 15 minutes (degrees from true N) * WindDir_SD1_WVT - the standard deviation of the average wind direction over the previous 15 minutes (degrees from true N)</code></pre>
CIMMYT spring wheat product profiles 2022
<p>Detailed target product profiles for CIMMYT spring wheat breeding 2022. The product profiles are the trait specifications for selection and release of material from the five CIMMYT spring wheat breeding pipelines: <em>(1) Hard white, optimum environment; (2) Hard white, heat tolerant, early maturity; (3) Hard white, drought tolerant, normal maturity; (4) Hard white, drought tolerant, early maturity </em>and <em>(5) Hard white/red, high rainfall</em>. These five pipelines target eight global market segments in Latin America and the Caribbean, East Africa, Central Asia, West Asia and North Africa and South Asia. Product profiles are defined as in the Excellence in Breeding Toolbox for “product design and management” (https://excellenceinbreeding.org/toolbox/tools/cgiar-seed-product-market-segment-database).</p> <p>Traits include grain and processing traits, nutritional enhancement, agronomic and disease traits. For spring wheat, no specific production, multiplication, or unique product registration traits apply in 2022 so these fields in the product profiles are marked as not applicable (NA). Traits are listed by category and assigned a measurement scale which is used in selection along with a minimum score. The traits are differentiated by requirement: either as “essential” or “nice to have” as well as the requirement for improvement (vs. maintenance). Indication of a trait as a threshold trait indicates it is a requirement for release of material from the breeding pipeline.</p>
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