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Dephasing-tolerant quantum sensing of transverse magnetic fields with spin qudits. Open data set
<p>Data supporting Figs. 1, 2, 3, 4 of the related manuscript.</p>
Bridging the Language Gap: An Empirical Study of Bindings for Open Source Machine Learning Libraries in Software Package Ecosystems
<p>Replication package for the paper "Bridging the Language Gap: An Empirical Study of Bindings for Open Source Machine Learning Libraries in Software Package Ecosystems "</p>
Austrian Science Fund (FWF) Open Access Compliance Monitoring 2023
<p>I. Executive summary</p> <p> </p> <p>The Austrian Science Fund (FWF), which is Austria's main funding organisation for basic research, encourages and helps all project leaders and project staff members to make their peer-reviewed research results freely available on the Internet. Any exceptions must be clearly indicated and justified. For projects that started after 1 January 2015, open access has been compulsory for all peer-reviewed publications. All principal investigators in FWF-funded projects are obliged to submit a final report within four months of completing their projects.</p> <p>In 2023, a total of 560 final reports were submitted to the FWF, 36 of which could not report any publications so far. The publications and other data mentioned in those reports are archived and analysed by the FWF. This report examines the state of compliance with open access requirements for peer-reviewed publications on the basis of final project reports submitted in the year 2023.</p> <p> </p> <p>Main findings:</p> <p> </p> <p>-A total of 6.389 publications were listed in the final project reports submitted in 2023.</p> <p>-Of those publications, 5.296 were conclusively identified as peer-reviewed.</p> <p>-Regarding compliance with the FWF's Open Access Policy, the analysis shows that 84% of the peer-reviewed publications listed in the final project reports submitted in 2023 were openly accessible (2017: 90%, 2018: 92%, 2019: 89%, 2020: 84%, 2021: 82%, 2022: 85%).</p> <p>-The most frequently chosen option was hybrid open access (37%). The share of gold open access was 31%, the share of green open access 17%, and no open access 16%.</p> <p>-The majority of peer-reviewed publications submitted were journal articles (85%), 91% of which were openly accessible.</p> <p>-The lowest rate of compliance with the FWF's Open Access Policy could be found in editions, contributions to edited volumes, and monographs (34%).</p> <p>-The absolute number of publications listed in final reports in 2023 included 265 publications that were mentioned several times in different projects; however, those repetitions did not affect the relative share of open access publications (84%).</p> <p> </p> <p>II. Bias</p> <p> </p> <p>Most of the publications were submitted to the FWF via a research documentation system (provided by ©Researchfish), in which FWF-funded researchers are able to enter and update their research data on an ongoing basis. The last check of the open access status was performed in March 2024. In some cases, the embargo period may have already expired, and publications labelled ‘closed’ in the FWF’s database may now be accessible through green open access.</p> <p> </p> <p>Whenever the status ‘peer-reviewed’ could not be clearly identified according to the FWF’s guidelines, the publications were classified as non-peer reviewed.</p> <p>Openly available non-peer reviewed publications were entered as 'openly available’.</p>
Open-Ended Dynamics of Coevolutionary Games Datasets
Open the record for dataset details and reuse information.
Dataset of Open Access trend in 2015
<pre>Each data entry has following 39 items. 1 NO: ID number 2 DB: SCI/SSCI/AHCI 3 Thomson DB_Authors 4 Thomson DB_Document Title 5 Thomson DB_Publication Name 6 Thomson DB_Publisher 7 Thomson DB_DOI 8 Thomson DB_Language 9 Thomson DB_Web of Science Category (WC) 10 Category:14 subject disciplines integrated from 200 Web of Science category 11 Group:A/B/C/D 12 OA/NOA :OA articles/Electronic subscription journal articles/Not available online 13 Means for making articles OA_Subject Repositories 14 Means for making articles OA_Full OA journals 15 Means for making articles OA_Delayed OA 16 Means for making articles OA_Hybrid Journals 17 Means for making articles OA_Complementary OA 18 Means for making articles OA_IRs 19 Means for making articles OA_Personal/institutional websites 20 Means for making articles OA_Academic SNS 21 Means for making articles OA_Others 22 Number of means of making OA 23 Subject Repositories_PMC/EuroPMC 24 Subject Repositories_arXiv 25 Subject Repositories_citeseerx 26 Subject Repositories_HAL 27 Subject Repositories_inspirehep 28 Subject Repositories_SSRN 29 Academic SNS_Researchgate 30 Academic SNS_Academia.edu 31 Academic SNS_Readcube 32 Others_ScienceOpen 33 Others_InternetArchive 34 OA Sites (URL)_Subject Repositories 35 OA Sites (URL)_Journals’ website 36 OA Sites (URL)_IRs ; Personal/institutional websites 37 OA Sites (URL)_Academic SNS 38 OA Sites (URL)_Others 39 Electronic subscription journal articles:Yes=1, No=0</pre>
FIGURE 10. A, Symplegma brakenhielmi zooid ventrally opened. B in Ascidians collected during the Madibenthos expedition in Martinique: 2. Stolidobranchia, Styelidae
FIGURE 10. A, Symplegma brakenhielmi zooid ventrally opened. B, Symplegma rubra zooid ventrally opened. Scale bars = 1mm.
Code Smells and their Collocations : A Large-scale Experiment on Open-source Systems
<p>This dataset includes classes with code smells, acquired from Qualitas Corpus (QC).<br> Folder 'all' contains data coming from the QC rev.20130901 (92 systems).<br> Folder 'domains' contains data coming from QC rev.20111026 (76 systems updated to their most recent releases from rev.20130901). <br> Folder 'pca' includes results of the PCA analysis, generated with the R prcomp() function for regular PCA, and logisticPCA() function for the binary data.</p> <p>Filenames include information about the base release of the QC, and a number (25, 50 or 75) that specifies the minimum number of detectors that identified a specific smell instance (25%, 50%, and 75%, respectively). For example, if a given code smell in a class X has been identified by 1 out of 4 available detecting tools, then the smell for the class X will be reported in the respective file 25, but not in 50 or 75. Please note, that for smells detected with only one tool, the values would be equal in all datasets (in that case, the smell was detected by 0% or 100% of tools)</p> <p>In all files, "1" denotes that the smell was identified (subject to the limitations with the number of detectors, described above), and “0” that the smell was not found in a given class.</p> <p>The filename also includes the domain abbreviation (app, css, dev, dgdv) or a keyword ALL, which indicates that the dataset includes data from all domains.</p> <p>The smells have been detected by 11 tools. Most of the tools detect more than one smell. <br> Information about the tool used to detect a given smell is given in headers of each file. Additionally, in 'smell detectors.csv' file we present the information about smells detected by a specific tool.</p>
Double inverse nanotapers for efficient light coupling to integrated photonic devices - Open Data
<p>Available data for the manuscript "Double inverse nanotapers for efficient light coupling to integrated photonic devices"</p>
Surgical resection for rectal cancer. Is laparoscopic surgery as successful as open approach? A systematic review with meta-analysis
<p>Data Set from the original article Surgical resection for rectal cancer. Is laparoscopic surgery as successful as open approach? A systematic review with meta-analysis.</p>
Text-fig. 16. Metric comparisons of upper and lower fourth premolars and third molars of Hippopotamodon erymanthius from Mahmutgazi (open squares) and Akkaşdaği (dots), Turkey. The two samples are metrically closely similar. in Hippopotamodon erymanthius (Suidae, Mammalia) from Mahmutgazi, Denizli-Çal basin, Turkey
Text-fig. 16. Metric comparisons of upper and lower fourth premolars and third molars of Hippopotamodon erymanthius from Mahmutgazi (open squares) and Akkaşdaği (dots), Turkey. The two samples are metrically closely similar.
Text-fig. 15. Bivariate plots of upper and lower fourth premolars and third molars of Hippopotamodon erymanthius and Hippopotamodon major (stars: Luberon, dots: Pikermi and open squares: Mahmutgazi). in Hippopotamodon erymanthius (Suidae, Mammalia) from Mahmutgazi, Denizli-Çal basin, Turkey
Text-fig. 15. Bivariate plots of upper and lower fourth premolars and third molars of Hippopotamodon erymanthius and Hippopotamodon major (stars: Luberon, dots: Pikermi and open squares: Mahmutgazi).
On the abandonment and survival of open source projects: An empirical investigation
<p>This replication package contains the results of our analysis as well as other data and scripts used in the process, which allows to reproduce and extend the results presented in the paper study.</p>
pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage - Validation data
<p>Image data used in the paper introducing pyKNEEr. Explanations about these data are in the <a href="https://github.com/sbonaretti/pyKNEEr/tree/master/publication">GitHub</a> repository</p> <p>Changes in version 0.2.0: </p> <p>- Added inHouse images </p> <p>- Segmented images casted to int16 for smaller file size</p>
Example StoX projects used in the publication "StoX - an open source software for marine survey analyses"
<p><strong>Datasets for the paper "StoX - an open source software for marine survey analyses"</strong></p> <p>Two example StoX projects provided as zip files, including input data and all user settings. These data were used to produce Figure 3 of the paper. The R-script used to produce the figure is included in the supporting information S5 of the paper:</p> <p>1. Example_Barents_Sea_cod_swept_area_survey_1999.zip</p> <p>2. Example_Nordic_Seas_herring_acoustic-trawl_survey_2016.zip</p> <p> </p>
Towards Open Access: Keeping up the Good Work
<p>Audio from <em>Session 12: Towards Open Science - Keeping up the Good Work</em>, held Friday 28 June 2019 at the LIBER 2019 Annual Conference.</p> <p>Talks included:</p> <ul> <li>12.1 <a href="https://doi.org/10.5281/zenodo.3260292">University Journals: Consolidating Institutional Repositories in a Free Open Access Publication Platform</a>, Saskia Woutersen-Windhouwer, University of Amsterdam and Leiden University Libraries, The Netherlands, Eva Méndez Rodríguez, Library and Information Sciences Department, Universidad Carlos III de Madrid, Spain, Jeroen Sondervan, Utrecht University Library, The Netherlands, Peter van Laarhoven, University of Groningen Library, The Netherlands, Frans Oort, Research Advisory Committee, University of Amsterdam, The Netherlands</li> <li>12.2 <a href="https://doi.org/10.5281/zenodo.3260294">DCU Press: Vision to Reality</a>, Ellen Breen, Dublin City University, Ireland</li> <li>12.3 <a href="https://doi.org/10.5281/zenodo.3260298">Opening up the Library: Transforming our Structures, Policies and Practices</a>. Joanna Ball, Roskilde University Library, Roskilde, Denmark, Graham Stone, Jisc Collections, United Kingdom, University of York Library, United Kingdom</li> <li>12.4 <a href="https://doi.org/10.5281/zenodo.3260301">No deal! Sweden Cancelled Agreement with Elsevier to Stand Up for Open Science</a>, Göran Hamrin and Cecilia Heyman-Widmark, KTH Royal Institute of Technology, Sweden</li> </ul>
Transitioning from Open Strategy to Open Practice
<p>Audio from <em>Session 2: Transitioning from Open Strategy to Open Practice</em>, held Wednesday 26 June 2019 at the LIBER 2019 Annual Conference.</p> <p>Talks included:</p> <ul> <li>2.1 <a href="https://doi.org/10.5281/zenodo.3258188">Open Scholarship in Practice: Presentation of a Set of Use Cases Collected on Behalf of Knowledge Exchange</a>, Gwen Franck, Gwen Franck GCV, Belgium</li> <li>2.2 <a href="https://doi.org/10.5281/zenodo.3258190">Making Open Science transparent: the Bibliolabs project</a>, Henri Bretel, Julien Sempéré, Vincent Thébault, Université Paris-Saclay, Paris, France</li> <li>2.3 <a href="https://doi.org/10.5281/zenodo.3258192">Is This the Way to Reproducibility?</a> Patricia Herterich, University of Birmingham, United Kingdom, Rosie Higman, University of Manchester, United Kingdom, The Turing Way, Alan Turing Institute, United Kingdom</li> </ul>
Results from the Open Call: How Citizens can participate in solar energy research?
<p>Results from the public consultation that GRECO Project (H2020-787289) launched in November 2018. These responses were collected from around 70 research teams along the world. The document is structured in three sections to think beyond researchers' needs. Any kind of successful collaboration implies that both parts must have a benefit and the consultation was also focused on such perspective.</p>
text-fig. 6. Skull reconstructions of representatives of Cretaceous OTUs in left lateral view, a, abelisaurid Camotaurus sastrei, Late Cretaceous (Campanian), Gorro Frigio Formation, Argentina; based on Bonaparte et al. (1990) and MACN CH 894. b, composite skull of a generalized baryonychid; mainly based on Suchomimus tenerensis (MNN GDF 501, 503-506) and Irritator challenged (SMNS 58022), with some elements reconstructed after Baryonyx walkeri (BMNH R 9951). c, carcharodontosaurid Carcharodontosaurus sahariens, Late Cretaceous (Cenomanian), Kem Kem beds, Morocco; based on Sereno et al. (1996) and SGM-Din 1, unpreserved elements shaded. D, dromaeosaurid Velociraptor mongoliensis, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; based on Barsbold (1983), Barsbold and Osmólska (1999), and AMNH 6515. e, ornithomimosaur Dromiceiomimus brevitertius, Late Cretaceous (Maastrichtian), Horseshoe Canyon Formation, Alberta, Canada; redrawn from Russell (1972). F, oviraptorosaur Oviraptor philoceratops, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; redrawn from Barsbold et al. (1990). G, therizinosauroid Erlikosaurus andrewsi, Late Cretaceous (Cenomanian- Turonian), Baynshiren Svita, Mongolia; based on Clark et al. (1994). H, tyrannosaurid Gorgosaurus libratus, Late Cretaceous (Campanian), Judith River Formation, Alberta, Canada, redrawn from Molnar et al. (1990). Abbreviations as in Text-figures 4 and 5, and: acc. op., accessory opening of unknown function in the premaxilla of Oviraptor (Barsbold et al. 1990); amf, anterior maxillary foramen; pn, pneumatic openings. Scale bars represent 50 mm (d-g) and 100 mm (a-c, h). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 6. Skull reconstructions of representatives of Cretaceous OTUs in left lateral view, a, abelisaurid Camotaurus sastrei, Late Cretaceous (Campanian), Gorro Frigio Formation, Argentina; based on Bonaparte et al. (1990) and MACN CH 894. b, composite skull of a generalized baryonychid; mainly based on Suchomimus tenerensis (MNN GDF 501, 503-506) and Irritator challenged (SMNS 58022), with some elements reconstructed after Baryonyx walkeri (BMNH R 9951). c, carcharodontosaurid Carcharodontosaurus sahariens, Late Cretaceous (Cenomanian), Kem Kem beds, Morocco; based on Sereno et al. (1996) and SGM-Din 1, unpreserved elements shaded. D, dromaeosaurid Velociraptor mongoliensis, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; based on Barsbold (1983), Barsbold and Osmólska (1999), and AMNH 6515. e, ornithomimosaur Dromiceiomimus brevitertius, Late Cretaceous (Maastrichtian), Horseshoe Canyon Formation, Alberta, Canada; redrawn from Russell (1972). F, oviraptorosaur Oviraptor philoceratops, Late Cretaceous (Campanian), Djadokhta Formation, Mongolia; redrawn from Barsbold et al. (1990). G, therizinosauroid Erlikosaurus andrewsi, Late Cretaceous (Cenomanian- Turonian), Baynshiren Svita, Mongolia; based on Clark et al. (1994). H, tyrannosaurid Gorgosaurus libratus, Late Cretaceous (Campanian), Judith River Formation, Alberta, Canada, redrawn from Molnar et al. (1990). Abbreviations as in Text-figures 4 and 5, and: acc. op., accessory opening of unknown function in the premaxilla of Oviraptor (Barsbold et al. 1990); amf, anterior maxillary foramen; pn, pneumatic openings. Scale bars represent 50 mm (d-g) and 100 mm (a-c, h).
text-fig. 17. Lateral view of the braincase, illustrating states for several braincase characters, a, basal ornithischian Lesothosaurus diagnosticus; redrawn from Sereno (1991Z?). B, Troödon formosus; based on Currie and Zhao (1993a); the paroccipital process of Troödon is shown in cross-section to illustrate the internal pneumatic cavity within this bone. Abbreviations: atr, anterior tympanic recess; bpt, basipterygoid process; boc, basioccipital; bsp, basisphenoid; bt, basal tuber; ep, episthotic; f, frontal; fo, fenestra ovalis; ic, foramen for the entrance of the vidian canal for the internal carotid; jf, jugular foramen; Is, laterosphenoid; mf, metotic fissure; o, orbital facet on the frontal; oc, occipital condyle; op, opisthotic; osp, orbitosphenoid; pa, parietal; pn, pneumatic openings or cavities; pop, paroccipital process; pro, prootic; ps, parasphenoid; pspc, parasphenoid capsule; ptf, posttemporal foramen; vcm, exit of the vena capitis medialis; Roman numbers refer to the foramina for the exits of cranial nerves. Scale bars represent 10 mm. in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 17. Lateral view of the braincase, illustrating states for several braincase characters, a, basal ornithischian Lesothosaurus diagnosticus; redrawn from Sereno (1991Z?). B, Troödon formosus; based on Currie and Zhao (1993a); the paroccipital process of Troödon is shown in cross-section to illustrate the internal pneumatic cavity within this bone. Abbreviations: atr, anterior tympanic recess; bpt, basipterygoid process; boc, basioccipital; bsp, basisphenoid; bt, basal tuber; ep, episthotic; f, frontal; fo, fenestra ovalis; ic, foramen for the entrance of the vidian canal for the internal carotid; jf, jugular foramen; Is, laterosphenoid; mf, metotic fissure; o, orbital facet on the frontal; oc, occipital condyle; op, opisthotic; osp, orbitosphenoid; pa, parietal; pn, pneumatic openings or cavities; pop, paroccipital process; pro, prootic; ps, parasphenoid; pspc, parasphenoid capsule; ptf, posttemporal foramen; vcm, exit of the vena capitis medialis; Roman numbers refer to the foramina for the exits of cranial nerves. Scale bars represent 10 mm.
Dataset for "Universal Loop assembly (uLoop): open, efficient, and species-agnostic DNA fabrication"
<p>This data is associated to the project "<strong>Universal Loop assembly (uLoop): open, efficient, and species-agnostic DNA fabrication". </strong>For more details see: https://osf.io/kw4fh/ </p> <p>Data is organized as follows:</p> <p>DNA: DNA genbank files for uLoop receivers, L0 parts and L1, L2, L3 and L4 assemblies<br> Efficiency-productivity: scoring representing uLoop assembly efficiency<br> Performance-bac: flow cytometry and plate fluorometry data describing the stability of uLoop genetic constructs in E coli</p> <p> </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.