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Supplementary material 7 from: Tanács E, Bede-Fazekas Á, Csecserits A, Kisné Fodor L, Pásztor L, Somodi I, Standovár T, Zlinszky A, Zsembery Z, Vári Á (2022) Assessing ecosystem condition at the national level in Hungary - indicators, approaches, challenges. One Ecosystem 7: e81543. https://doi.org/10.3897/oneeco.7.e81543
Appendix 7
Supplementary material 1 from: Homberger L, Xu J, Brandis D, Chan T-Y, Keirsebelik H, Normant-Saremba M, Schoelynck J, Chu KH, Ewers-Saucedo C (2022) Genetic and morphological evidence indicates the persistence of Japanese mitten crab mitochondrial DNA in Europe for over 20 years and its introgression into Chinese mitten crabs. NeoBiota 73: 137-152. https://doi.org/10.3897/neobiota.73.72566
Table S1. Master spreadsheet with morphological and genetic information for each specimen
Data from: White plumage color as an honest indicator: feather macrostructure links reflectance with reproductive effort and success
<p class="normal1">The structural condition of feathers may generally have a decisive role in shaping the color properties of the plumage. However, the information content of structurally mediated color differences is poorly known. This makes it particularly hard to determine the meaning of color variation in pigment-free white plumage patches. The white wing patch of the collared flycatcher (<em>Ficedula albicollis</em>) is an important sexual trait, and changes in its reflectance are partly due to macrostructural condition. We used two years of macrostructural, reflectance and breeding data from both sexes to examine whether wing patch macrostructure lends information content to actual reflectance in terms of reproductive effort and success. Macrostructure strongly predicted actual reflectance in males but only weakly in females. Furthermore, in males, feather vane width was related positively to current year reproductive effort, and negatively to previous year reproductive effort. This indicates that macrostructurally mediated reflectance attributes may inform the receiver not only of actual reproductive capacity but also of individual quality via reproductive costs.</p>
Antibiotic tolerance indicative for persistence is pervasive among clinical Streptococcus pneumoniae isolates and shows strong condition dependence - dataset
<p>The dataset is linked to the article entitled 'Antibiotic tolerance indicative for persistence is pervasive among clinical <em>Streptococcus pneumoniae</em> isolates and shows strong condition dependence' with following abstract. </p> <p><em>Streptococcus pneumoniae</em> is an important human pathogen, being one of the most common causes of community-acquired pneumonia and otitis media. Antibiotic resistance in <em>S. pneumoniae</em> is an emerging problem as it depletes our arsenal of effective drugs. In addition, persistence also contributes to the antibiotic crisis in many other pathogens, yet, in <em>S. pneumonia</em>e little is known about antibiotic-tolerant persisters and robust experimental means are lacking. Persister cells are phenotypic variants that exist as a subpopulation within a clonal culture. Being tolerant to lethal antibiotics, they underly the chronic nature of a variety of infections and even help in acquiring genetic resistance. Here, we set out to identify and characterize persistence in <em>S. pneumoniae. </em>Specifically, we followed different strategies to overcome the self-limiting nature of<em> S. pneumoniae </em>as confounding factor in the prolonged monitoring of antibiotic survival needed to study persistence. In optimized conditions, we identified genuine persisters in various growth phases and for four relevant antibiotics through biphasic survival dynamics and heritability assays. Finally, we detected a high variety in antibiotic survival levels across a diverse collection of <em>S. pneumoniae</em> clinical isolates, which assumes that a high natural diversity in persistence is widely present in <em>S. pneumoniae</em>. Collectively, this proof-of-concept significantly progresses the understanding of the importance of antibiotic persistence in<em> S. pneumoniae</em> infections which will set stage for characterizing its relevance to clinical outcomes and advocates for increased attention to the phenotype in both fundamental and clinical research.</p>
Text-fig. 6. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a: Volume rendering of flower in apical view showing five narrow calyx lobes; note that the apical part of the five-angled style is sealed (arrow). b: Volume rendering of flower (cut at orthoslice xy0796) showing transverse sections of calyx lobes with three distinct bundles indicated by arrows in one of the lobes, ovary wall (ow) and central placenta (pl) bearing numerous ovules (ov). c, d: Transverse sections of style (c, orthoslice xy0153; d, orthoslice xy0222) showing five angled form, sealed near apex (c) and with prominent central canal further farther down (d). e: Volume rendering of flower (cut at orthoslice xz1024) in longitudinal section showing calyx, semi-inferior ovary with ovary wall (ow), and central placenta (pl) bearing numerous ovules (ov). Specimen, Mira 100-S153145 (a–d). Scale bars = 600 µm (a, b, e), 100 µm (c, d). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications
Text-fig. 6. SRXTM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a: Volume rendering of flower in apical view showing five narrow calyx lobes; note that the apical part of the five-angled style is sealed (arrow). b: Volume rendering of flower (cut at orthoslice xy0796) showing transverse sections of calyx lobes with three distinct bundles indicated by arrows in one of the lobes, ovary wall (ow) and central placenta (pl) bearing numerous ovules (ov). c, d: Transverse sections of style (c, orthoslice xy0153; d, orthoslice xy0222) showing five angled form, sealed near apex (c) and with prominent central canal further farther down (d). e: Volume rendering of flower (cut at orthoslice xz1024) in longitudinal section showing calyx, semi-inferior ovary with ovary wall (ow), and central placenta (pl) bearing numerous ovules (ov). Specimen, Mira 100-S153145 (a–d). Scale bars = 600 µm (a, b, e), 100 µm (c, d).
Text-fig. 5. Anacardiaceae (a–m), Burseraceae (n–q). Scale bars = 1 cm. a–f: Pentoperculum sp. a–c: USNM PAL 772360. a: Lateral view of endocarp, apex up; three germination valves visible, the central clearly displaying the bipartite nature of the valve, reflected light, palladium coated. b: Apical view displaying six locules, with two preserved germination valves at the lower left, reflected light, palladium coated. c: Basal view of the endocarp, the locules suggested by swellings; note point of attachment, micro-CT scan surface rendering. d–f: Pentoperculum sp. USNM PAL 772359, reflected light, palladium coated. d: Lateral view of a probable 6-loculed endocarp, apex up; a single intact germination valve in the center, displaying the central lineation that divides it in two. e: Apical view; two bi-partite germination valves are visible, indicated by arrows to the middle cleavage line of two of the valves. f: Basal view, the locules suggested by the undulations in the margin. g–i: Indet. Spondioideae. USNM PAL 772358, reflected light, palladium coated. g: Lateral view of multi-locular endocarp, apex up. h: Apical view showing finely punctuate surface and peripheral locule cavities. i: Basal view. j–m: Cf. Pleiogynium USNM PAL 772357. j: Lateral view of the multi-locular endocarp, apex up; note intact germination valve on left and exposed locule facing the viewer, micro-CT scan surface rendering. k: Lateral view, rotated about 30° from (j), showing three exposed locules, reflected light, palladium coated; note bipartite locule lining at center. l: Apical view of the multilocular endocarp; the locule with intact germination valve at the upper right, reflected light, palladium coated. Arrows to each locule. m: Basal view showing central point of attachment and prominent radiating ridges aligned with the locules, micro-CT scan surface rendering. n–q: Canarium, USNM PAL 772361. Scale bar = 1 cm. n: Lateral view of endocarp directly facing one germination valve flanked by two strong ridges; apex up; specimen coated in sodium nitrate and photographed by R. A. Scott. o: Lateral view facing one of the three pronounced ridges, flanked to the left and right by two germination valves; apex up. p: Apical view displaying the three strong ridges, arching over the apex and flanking three deep embayments, covered with germination valves. q: Basal view, the three ridges being less pronounced. o–q: Reflected light, palladium coated. in The Early Middle Eocene Wagon Bed Carpoflora Of Central Wyoming, U.S.A.
Text-fig. 5. Anacardiaceae (a–m), Burseraceae (n–q). Scale bars = 1 cm. a–f: Pentoperculum sp. a–c: USNM PAL 772360. a: Lateral view of endocarp, apex up; three germination valves visible, the central clearly displaying the bipartite nature of the valve, reflected light, palladium coated. b: Apical view displaying six locules, with two preserved germination valves at the lower left, reflected light, palladium coated. c: Basal view of the endocarp, the locules suggested by swellings; note point of attachment, micro-CT scan surface rendering. d–f: Pentoperculum sp. USNM PAL 772359, reflected light, palladium coated. d: Lateral view of a probable 6-loculed endocarp, apex up; a single intact germination valve in the center, displaying the central lineation that divides it in two. e: Apical view; two bi-partite germination valves are visible, indicated by arrows to the middle cleavage line of two of the valves. f: Basal view, the locules suggested by the undulations in the margin. g–i: Indet. Spondioideae. USNM PAL 772358, reflected light, palladium coated. g: Lateral view of multi-locular endocarp, apex up. h: Apical view showing finely punctuate surface and peripheral locule cavities. i: Basal view. j–m: Cf. Pleiogynium USNM PAL 772357. j: Lateral view of the multi-locular endocarp, apex up; note intact germination valve on left and exposed locule facing the viewer, micro-CT scan surface rendering. k: Lateral view, rotated about 30° from (j), showing three exposed locules, reflected light, palladium coated; note bipartite locule lining at center. l: Apical view of the multilocular endocarp; the locule with intact germination valve at the upper right, reflected light, palladium coated. Arrows to each locule. m: Basal view showing central point of attachment and prominent radiating ridges aligned with the locules, micro-CT scan surface rendering. n–q: Canarium, USNM PAL 772361. Scale bar = 1 cm. n: Lateral view of endocarp directly facing one germination valve flanked by two strong ridges; apex up; specimen coated in sodium nitrate and photographed by R. A. Scott. o: Lateral view facing one of the three pronounced ridges, flanked to the left and right by two germination valves; apex up. p: Apical view displaying the three strong ridges, arching over the apex and flanking three deep embayments, covered with germination valves. q: Basal view, the three ridges being less pronounced. o–q: Reflected light, palladium coated.
Figure 1 from: Korshunova TA, Sanamyan NP, Martynov AV (2016) Morphological and molecular evidence indicate Dendronotus primorjensis is a valid species that has priority over D. dudkai (Nudibranchia). ZooKeys 634: 15-28. https://doi.org/10.3897/zookeys.634.10231
Figure 1 - Dendronotus primorjensis, type material from Zoological Museum MSU: A holotype ZMMU Op-419, live, 35 mm in length, dorsal view B fixed holotype ZMMU Op-419 C paratype ZMMU Op-420, live, 21 mm in length D fixed paratype ZMMU Op-420 E radula of the holotype ZMMU Op-419, posterior part, SEM; F same, details G reproductive system of the holotype ZMMU Op-419. Abbreviations: am ampulla; bc bursa; fgm female gland mass; pr prostate; ps penial sheath; vd vas deferens; vg vagina. Scale bars E = 100 µm F = 30 µm G = 1 mm. Photos and SEM images by T.A. Korshunova and A.V. Martynov (Figures A, E, and F were published as part of the original description by Martynov et al. 2015a).
Figure 2 from: Korshunova TA, Sanamyan NP, Martynov AV (2016) Morphological and molecular evidence indicate Dendronotus primorjensis is a valid species that has priority over D. dudkai (Nudibranchia). ZooKeys 634: 15-28. https://doi.org/10.3897/zookeys.634.10231
Figure 2 - Phylogenetic tree based on combined molecular data (COI + 16S + 28S) represented by Bayesian Inference. Numbers above branches represent posterior probabilities from BI. Numbers below branches indicate bootstrap values for Maximum Likelihood.
Complementary material: Hyperlinks embedded in Twitter: a new cybermetric indicator to measure the impact of universities on the web
<p>Se analiza Twitter como posible fuente alternativa de enlaces externos para ser utilizados en análisis cibermétricos, gracias su capacidad de embeber hiperenlaces en los diferentes Tweets. Dadas las limitaciones en la consulta a la API pública de Twitter, se plantea el uso del buscador Topsy como fuente de recopilación de Tweets. Para ello, se toma una muestra global de 200 universidades y se obtienen los Tweets con hiperenlaces hacia alguna de estas instituciones. Adicionalmente se obtienen datos de enlaces de otras fuentes alternativas (MajesticSEO y OpenSiteExplorer) con el fin de comparar los resultados obtenidos. Posteriormente, se realizan diversos test estadísticos para conocer la correlación entre los indicadores utilizados y la capacidad de predicción de enlaces externos a partir de los Tweets recopilados. Los resultados indican un volumen de Tweets elevado aunque sesgado por la presencia y rendimiento de universidades y países concretos. Los datos ofrecidos por Topsy correlacionan significativamente con todos los indicadores de enlaces, especialmente con OpenSiteExplorer (r=0.769). Finalmente, los modelos de predicción no aportan resultados óptimos debido a altas tasas de error, que se reducen ligeramente en modelos no lineales aplicados a entornos específicos. Se concluye que el uso de Twitter (a través de Topsy) como fuente de hiperenlaces hacia universidades presenta resultados prometedores por su alta correlación con los indicadores de enlaces, aunque limitado por las políticas en cuanto al uso y presencia en las redes sociales.</p>
Dataset for: Cure or Curse? Simulation Indicates that Microbes Proliferate under Disinfection Measures in the Space Station
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Indicators for quantifying and classifying future water supply infrastructure scenarios in waterbodies surrounding San Antonio within Bexar County, Texas
Indicators for quantifying and classifying future water supply infrastructure scenarios in waterbodies surrounding San Antonio within Bexar County, Texas
The environmental indicators and soil particle size of lakeside agricultural land vadose zone soil
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Fig. 5 in Efficacy of Actellic 300 CS-based indoor residual spraying on key entomological indicators of malaria transmission in Alibori and Donga, two regions of northern Benin
Fig. 5 Dynamics of EIR before and after IRS campaigns in treated and control areas from May 2016 to November 2018
PERFORMANCE INDICATORS OF THE STATE EMPLOYMENT SERVICE: MONOCENTER OF BUKHARA REGION.
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Figure 3 in Marine hermit crabs as indicators of freshwater inundation on tropical shores
Figure 3. Daily shoreline salinity (dark line) and temperature (shaded line) readings between April, 1989, and January, 1992, along Keppel Bay. Arrows A indicate regular, seasonal flood events on a local scale, arrow B indicates an irregular, flood event on a large, catchment scale. From Coates, unpublished data.
MYELOGRAM INDICATORS IN HIV-INFECTED CHILDREN
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Fig. 3 in The use of morphological and histological features as nutritional condition indices of Pagrus pagrus larvae
Fig. 3. Histological sections of Pagrus pagrus larvae, indicators of short term nutritional condition. Sagital section of 4 µm thick stained with Harris's hematoxylin and eosin counterstain (H-E). (a-c) digestive duct, (d-f) pancreas, (g-i) liver; left = fed larvae, middle = delayed fed lavae and right = starved larvae. bb: brush border, dbb: distinct brush border, dt: dissociated tissue, enp: endocrine pancreas, exp: exocrine pancreas, hsn: heavily stained nucleus, pn: prominent nucleus, se: shrunken enterocytes, we: wide enterocytes. Scale bar indicates 10 µm.
In-vivo two-photon imaging of aberrant Ca2+-waves following viral transduction of Ca2+ indicators in mice
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Facilitators, indicators and results of engagement in learning mathematics in the written memories of first-year primary school teacher students
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FIGURE 3 in Phylogeography of the banded butterflyfish, Chaetodon striatus, indicates high connectivity between biogeographic provinces and ecosystems in the western Atlantic
FIGURE 3 | Median-joining haplotype network with two datasets: A. mtDNA concatenated (control region and cyt b); B. rag 2. Each color represents one population. Black nodes mean mutational steps.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.