Find research datasets worth reusing

opencc-by-4.0Jan 2021View details →

Figure 1 in The Eldari tick Ixodes eldaricus (Acari: Ixodidae) in Israel: its occurrence, morphometric and biological characteristics

Figure 1. No of ticks collected in the survey area (vertical axis – No of ticks).

opencc-by-4.0Jul 2020View details →

Figure 3 in Biology of the oribatid mite Acrotritia clavata (Märkel, 1964) from the mangrove ecosystems of North Kerala, India

Figure 3. Acrotritia clavata (lateral view). A. Larva, B. Protonymph, C. Deutonymph, D. Tritonymph.

opencc-by-4.0Jul 2023View details →

Shifting the focus from species to individuals in invasion biology: Individual differences in jumping behaviour

Dataset associated with 'Shifting the focus from species to individuals in invasion biology: Individual differences in jumping behaviour' manuscript.

opencc-by-nc-sa-4.0Jul 2023View details →

Hyperspectral Placenta Dataset: Hyperspectral Image Acquisition, Annotations, and Processing of Biological Tissues in Microsurgical Training

The dataset consists of 101 hyperspectral images of four fresh human placentas and six hyperspectral images of contrast dyes (i.e., indocyanine green and red and blue food colorant) that were captured in the range 515-900 nm, step = 5 nm. The hyperspectral images were manually annotated, delineating the key anatomical structures: arteries, veins, stroma, and the umbilical cord. Standard reference materials were used for flat-field correction. The dataset can be used to develop machine learning algorithms for the automated classification of biological structures, particularly the classification of superficial and deep vessels and transparent tissue layers.

dryad36/100

Biological links between personality and plasticity: testing some alternative hypotheses

When organisms respond behaviorally to a stimulus, they exhibit plasticity, but some individuals respond to the same stimulus consistently differently than others, thereby also exhibiting personality differences. Parent house sparrows express individual differences in how often they feed offspring and how that feeding rate changes with nestling age. Mean feeding rate and its slope with respect to nestling age were positively correlated at median nestling ages but not at hatching, indicating that individuality is primarily in plasticity. Individual differences could arise due to 1) interactions between environmental variables, 2) differences in underlying state or 'quality', or 3) differences in the ability to update cues of changing nestling demand. Individual slopes were modestly repeatable across breeding attempts, hinting at the likely action of additional environmental variables, but only brood size was important. I also found few correlates suggesting quality differences. I used short-term brood size manipulations at two nestling ages to test divergent predictions between the three hypotheses. The pattern of correlations between response to the manipulation and individual slope did not fit any single hypothesis. Patterns of sparrow parental care reveal that personality and plasticity are not cleanly separable, and their biology is likely intertwined. New thinking may be needed about the factors parents use in decisions about care and the relevant fitness consequences.

opencc-zeroAug 2023View details →

dryad36/100

Data from: Zero- to ultralow-field relaxometry of chemical and biological fluids

NMR relaxometry is an analytical technique that provides information about the molecular environment by analyzing the properties of NMR signals versus the magnitude of the longitudinal field. In this work, we present NMR relaxometry at zero and ultra-low magnetic fields (ZULFs). Operation under ZULFs allows us to investigate many slow (bio)chemical processes, whose timescale (milliseconds-seconds) coincides with a timescale of spin evolution. In contrast to their high-field NMR, ZULF NMR measurements can be performed with atomic magnetometers. Here, we share the dataset obtained from ZULF NMR relaxometry measurements of (bio)chemical compounds containing 1H 13C, 1H-15N, and 1H-31P spin pairs, human whole-blood and blood-plasma.

opencc-zeroAug 2023View details →

opencc-by-4.0Aug 2023View details →

Harnessing genotype-phenotype nonlinearity to accelerate biological prediction

Description: We are sharing phenotypic data sets used in the pub <a href="http://doi.org/10.57844/arcadia-5953-995f">“Harnessing genotype-phenotype nonlinearity to accelerate biological prediction”</a>. Contained within are a set of publicly available empirical phenotype data sets, synthetic phenotypes we generated, and the output of an autoencoder model trained on them. Walkthroughs for all analyses using these data are available on <a href="http://doi.org/10.5281/zenodo.8371249">GitHub</a>. Files:  <ul> <li>“ail_cleaned_phenos.RDS”: .RDS file of mouse phenotypes from Bogue et al. 2015</li> <li>“all_autoencoder_phenotype_predictions.csv“: .csv file containing accuracy statistics for all phenotype-phenotype autoencoder models analyzed in the pub</li> <li>“arapheno_cleaned_phenos.RDS“: .RDS file of Arabidopsis phenotypes from Exposito-Alonso et al. 2019</li> <li>“autoencoder_phenos.zip“: directory of synthetic phenotype sets used to train the autoencoder models</li> <li>“dgrp_cleaned_phenos.RDS”: .RDS file of DGRP fruit fly phenotypes compiled from multiple sources, originally reported in Mackay et al. 2012</li> <li>“jax_cleaned_phenos.RDS”: .RDS file of mouse phenotypes from Gonzales et al. 2018</li> <li>“nematode_cleaned_phenos.RDS”: .RDS file of nematode phenotypes from Snoek et al. 2019</li> <li>“phen_pleio_int_01_0_1.pk”: pickle of all synthetic phenotypes analyzed in the pub</li> <li>“yeast_cleaned_phenos.RDS”: .RDS file of yeast phenotypes from Bloom et al. 2019</li> </ul> A full description of how the synthetic phenotypes and autoencoder predictions were generated is available in the associated <a href="http://doi.org/10.57844/arcadia-5953-995f">pub</a>.

opencc-by-4.0May 2019View details →

FIGURE 7 Girardia tigrina from Liguria. A in The invasive alien freshwater FLatworm Girardia tigrina (Girard, 1850) (Platyhelminthes, Tricladida) in Western Europe: new insights into its morphology, karyology and reproductive biology

FIGURE 7 Girardia tigrina from Liguria. A. Metaphasic plate; B. Karyogram.

dryad36/100

Tree species richness around urban red maples reduces pest abundance but does not enhance biological control

Urban trees often host greater insect pest abundance than trees in rural forests. This may be due, in part, to differences in tree diversity and canopy cover between these settings. Urban trees are often planted in isolation or monoculture, which favors pest accumulation. The gloomy scale, Melanaspis tenebricosa Comstock, is a pest of urban red maples (Acer rubrum L.) that is abundant where impervious surfaces dominate the local landscape. Increasing tree diversity and canopy cover around urban red maples may reduce gloomy scale abundance by supporting natural enemy communities. We investigated the effect that surrounding tree species richness and tree canopy cover had on gloomy scale abundance, natural enemy abundance, and biological control in red maple trees in Raleigh, NC, USA. We collected scales and natural enemies from red maples that spanned a gradient of tree species richness, canopy cover, and impervious surface values. We also measured gloomy scale parasitism and predation of sentinel prey in red maple canopies. Greater tree species richness and canopy cover were associated with lower gloomy scale density. Red maples in diverse settings also hosted fewer scales per natural enemy. Parasitoids were less common in maples in diverse settings, but generalist predator abundance was unaffected by tree diversity. Finally, tree species richness and canopy cover did not increase biological control of scales or sentinel prey. Our findings suggest that higher tree diversity and greater canopy cover may reduce gloomy scale density, but this is not entirely explained by the effects of natural enemies and biological control.

opencc-zeroOct 2023View details →

opencc-by-4.0Oct 2023View details →

Combined effects of fronts, upwelling and the biological pump on organophosphate esters in the Changjiang (Yangtze) River estuary during summer

The deposition contains experiment details, instrument conditions, sampling information, environmental parameters, physicochemical properties of focus compounds, QA/QC, and detected target concentrations.

Immunogenicity and Safety Study of GlaxoSmithKline (GSK) Biologicals' Boostrix™ Vaccine in Pregnant Women

ClinicalTrials.gov study NCT02377349. IPD Sharing: YES. Countries: 6. Publications: 1.

Immunogenicity and Safety Study of a GlaxoSmithKline Biologicals' Candidate Influenza Vaccine in Healthy Children

ClinicalTrials.gov study NCT00985790. IPD Sharing: YES. Countries: 1. Publications: 1.

restrictedIPD-UNDECIDEDFeb 2026View details →

Immunogenicity and Safety of GSK Biologicals' Combined Measles-mumps-rubella Vaccine in Volunteers, Seven Years of Age and Older

ClinicalTrials.gov study NCT02058563. IPD Sharing: Not stated. Countries: 3. Publications: 1.

Immunogenicity and Safety of GlaxoSmithKline (GSK) Biologicals' Herpes Zoster Subunit (HZ/su) Vaccine GSK1437173A in Adults With a Prior Episode of Herpes Zoster

ClinicalTrials.gov study NCT01827839. IPD Sharing: YES. Countries: 2. Publications: 1.

Comparison of GSK Biologicals' Meningococcal Vaccine (GSK134612) and Licensed MenC-CRM197 Vaccine in Healthy Children

ClinicalTrials.gov study NCT00674583. IPD Sharing: YES. Countries: 2. Publications: 1.

Study to Evaluate Immunogenicity and Safety of GSK Biologicals' Herpes Zoster Subunit (HZ/su) Vaccine at 9 and 10 Years After Vaccine Administration and Assessment of Re-vaccination With 2 Additional

ClinicalTrials.gov study NCT02735915. IPD Sharing: YES. Countries: 3. Publications: 2.

restrictedIPD-UNDECIDEDFeb 2026View details →

Reactogenicity and Safety of GlaxoSmithKline (GSK) Biologicals' Rotarix™ (Human Rotavirus Vaccine) in Indian Infants

ClinicalTrials.gov study NCT00938327. IPD Sharing: Not stated. Countries: 1. Publications: 1.

closedIPD-NOFeb 2026View details →

Biological Therapy and Radiation Therapy in Treating Patients With Newly Diagnosed Glioblastoma Multiforme

ClinicalTrials.gov study NCT00052715. IPD Sharing: NO. Countries: 1. Publications: 1.

Study in Toddlers to Demonstrate Non-inferiority of GSK Biologicals' Hib-MenC & to Evaluate Persistence up to 5 Years.

ClinicalTrials.gov study NCT00326118. IPD Sharing: YES. Countries: 1. Publications: 2.

Safety and Immunogenicity Study of a Booster Dose of GSK Biologicals' 10-valent Pneumococcal Conjugate Vaccine.

ClinicalTrials.gov study NCT00370396. IPD Sharing: YES. Countries: 3. Publications: 5.