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19,342 results for “sequence”
MRI Raw Data of Cardiac Radial Real-Time BSSFP Sequence (Part 3/5)
<p>Other parts of this dataset are available at:</p> <div> <div>* Part 1: 10.5281/zenodo.10492333</div> <div>* Part 2: 10.5281/zenodo.10912299</div> <div>* Part 3: 10.5281/zenodo.10492343</div> <div>* Part 4: 10.5281/zenodo.10492455</div> <div>* Part 5: 10.5281/zenodo.10493095</div> </div>
MRI Raw Data of Cardiac Radial Real-Time BSSFP Sequence (Part 4/5)
<p>Other parts of this dataset are available at:</p> <div> <div>* Part 1: 10.5281/zenodo.10492333</div> <div>* Part 2: 10.5281/zenodo.10912299</div> <div>* Part 3: 10.5281/zenodo.10492343</div> <div>* Part 4: 10.5281/zenodo.10492455</div> <div>* Part 5: 10.5281/zenodo.10493095</div> </div>
Obovaria olivaria maf filtered vcf file from: RAD-tag and mitochondrial DNA sequencing reveal the genetic structure of a widespread and regionally imperiled freshwater mussel, Obovaria olivaria (Bivalvia: Unionidae)
<p><em>Obovaria olivaria</em> is a species of freshwater mussel native to the Mississippi River and Laurentian Great Lakes-St. Lawrence River drainages of North America. This mussel has experienced population declines across large parts of its distribution and is imperiled in many jurisdictions. <em>Obovaria olivaria </em>uses the similarly imperiled <em>Acipenser fulvescens</em> (Lake Sturgeon) as a host for its glochidia. We employed mitochondrial DNA sequencing and Restriction-site Associated DNA sequencing (RAD-seq) to assess patterns of genetic diversity and population structure of <em>O. olivaria</em> from 19 collection locations including the St. Lawrence River drainage, the Great Lakes drainage, the Upper Mississippi River drainage, the Ohioan River drainage and the Mississippi Embayment. Heterozygosity was highest in Upper Mississippi and Great Lakes populations, followed by a reduction in diversity and relative effective population size in the St. Lawrence populations. Pairwise <em>F</em><sub>ST</sub> ranged from 0.00 to 0.20, and analyses of genetic structure revealed two major ancestral populations, one including all St. Lawrence River/Ottawa River sites and the other including remaining sites; however, significant admixture and isolation by river distance across the range were evident. The genetic diversity and structure of <em>O. olivaria</em> is consistent with the existing literature on <em>Acipenser fulvescens</em> and suggest that, although northern and southern <em>O. olivaria</em> populations are genetically distinct, genetic structure in <em>O. olivaria</em> is largely clinal rather than discrete across its range. Conservation and restoration efforts of <em>O. olivaria</em> should prioritize the maintenance and restoration of locations where <em>O. olivaria </em>remain, especially in northern rivers, and to ensure connectivity that will facilitate dispersal of <em>Acipenser fulvescens</em> and movement of encysted glochidia.</p>
FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A in New xenophyophores (Foraminifera, Monothalamea) from the eastern Clarion-Clipperton Zone (equatorial Pacific)
FIGURE 2. Aschemonella monilis Gooday & Holzmann 2017. A–D, Sequenced specimens. A, Dark specimen attached to nodule; RC1056 (BC026). B, Interior of test fragment with red granellare (after removal of most pieces for sequencing) and dark stercomare; RC0056 (BC001). C, Fragment with two segments; RC0490B (BC010). D, E, RC1900.1 (BC045). D, Fragment with broken segment containing granellare. E, Detail of dome and tubular apertural structure. F, G, Specimens without cytoplasm; RC1900.2 (BC045). F, Complete fragment. G, Detail of apertural structures. No scale is available for B.
TDMT solutions from catalog of "A Large Fault Partially Reactivated During Two Contiguous Seismic Sequences in Central Italy: The Role of Geometrical and Frictional Heterogeneities"
<p>Some new TDMT solutions from catalog at the link <a href="https://doi.org/10.5281/zenodo.10801577">https://doi.org/10.5281/zenodo.10801577</a>. The catalog contains events with M > 3.0, that occurred between January 2009 and April 2021, in Campotosto area, Italy. Moment tensor were calculated by applying the Time Domain Moment Tensor technique, originally proposed by Dreger and Helmberger (1993) and Pasyanos et al. (1996) and successively implemented at INGV by Scognamiglio et al. (2009).</p> <p>For every moment tensor the PDF file contains the event location, waveform fits, nodal planes, magnitude, double couple (DC) and compensated linear vector dipole (CLVD) values, variance reduction, six components of moment tensor and station coverage.</p>
STAMINA project 883441 related raw sequencing data of RTPCR positive SARS-CoV-2 amplicons
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The 3'-RACE data (InPACT: A computational method for accurate characterization of intronic polyadenylation from RNA sequencing data)
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Supplementary material 1 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
List of universal insect mitochondrial short fragments of the cox1, cob, rrnL and D2 genes primers used for long PCR primer developments
Antibody-Antigen Models for McCoy 2024 Paper: "A Comparison of Antibody-Antigen Complex Sequence-to-Structure Prediction Methods and their Systematic Biases"
<p>Up to the top 20 models generated for each method tested in the 2024 Paper: "A Comparison of Antibody-Antigen Complex Sequence-to-Structure Prediction Methods and their Systematic Biases"</p>
RNA sequencing code associated with Billipp et al. Immunity 2024 - Chat + vs Chat - tuft cells
<p>R code and result for RNA-sequencing analysis comparing <em>Chat(GFP)+ </em>and <em>Chat(GFP)- </em>tuft cells sorted from the small intestine of <em>B6.Chat-GFP</em> mice. Associated with Billipp et al. Immunity 2024 titled "Tuft cell-derived acetylcholine promotes epithelial chloride secretion and intestinal helminth clearance"</p>
RNA sequencing code associated with Billipp et al. Immunity 2024 - Prox vs. distal tuft cells
<p>R code and result for RNA-sequencing analysis comparing tuft cells sorted from the proximal and distal small intestine of mice. Associated with Billipp et al. Immunity 2024 titled "<span>Tuft cell-derived acetylcholine promotes epithelial chloride secretion and intestinal helminth clearance</span>"</p>
FIGURE 5. Circular maximum parsimony phylogenetic tree with all sequenced recognised Thai Aleiodes species with a in A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species
FIGURE 5. Circular maximum parsimony phylogenetic tree with all sequenced recognised Thai Aleiodes species with a number of named, primarily Palaearctic taxa included. Species groups that are characterizable morphologically and discussed are indicated in different colours. The tree is rooted using Heterogamus species.
Figure 2 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 2. Visualisation of assembled mitochondrial genome of Domecia acanthophora. Photo by Yun Scholten.
Figure 1 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 1. Repetitive elements in the genome of Domecia acanthophora. Each bar corresponds to a different type of annotated cluster. Numbers between parentheses in the legend represent the total number of annotated clusters in that category.
Figure 4 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 4. Mitochondrial gene order (MGO) of Domecia acanthophora compared to that of the brachyuran basic gene order, with the two transposition events highlighted.
Raw k-space data for free-breathing diffusion weighted sequence
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Supplementary data: Predicting grid frequency short-term dynamics with Gaussian processes and sequence modeling
<p>This repository contains data and result files for the paper "Predicting grid frequency short-term dynamics with Gaussian processes and sequence modelling". The code to generate the models and reproduce the results of the comparative study in the above paper is available on this <a href="https://github.com/bolin-liu/sequence-model-and-gaussian-process-for-frequency-prediction">github repository</a></p> <p><strong>Supplementary data</strong>:</p> <p>- The <strong>trained_models</strong> folder contains the results of the trained models.</p> <p>- The folder <strong>data</strong> contains data needed for for the comparative study for the year 2019 in the paper above. This data set (except knn_point_predictions.npy) is generated with the code in this <a href="https://github.com/johkruse/PIML-for-grid-frequency-modelling">github repository</a>. knn_point_predictions.npy is generated with the code in this <a href="https://github.com/bolin-liu/sequence-model-and-gaussian-process-for-frequency-prediction">github repository </a>.</p>
Sample data for sequencing QC very short introduction
<p>Sample data for training</p>
Single nucleus RNA-sequencing data related to Van Hijfte et al. 2024
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Datasets for "Physicochemical graph neural network for learning protein-ligand interaction fingerprints from sequence data"
<div> <p>Datasets used for implementing the <a href="https://github.com/huankoh/PSICHIC">PSICHIC</a> experiments shown in the <a href="https://doi.org/10.1101/2023.09.17.558145">manuscript</a>.</p> <p> </p> </div>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.