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FIGURE 1 in Phylogenetic relationships among the Epiperipatus lineages (Onychophora: Peripatidae) from the Minas Gerais State, Brazil
FIGURE 1. Topographic map of the Minas Gerais State illustrating the localities of the Epiperipatus specimens sampled. The names of studied geographical regions are given according to their relative position in the map. The dotted line shows the extent of the Serra do Espinhaço, the northern part of which exceeds the Minas Gerais State border. The uppercase letters at each black dot indicate the following localities: (A) Particular Reserve of Natural Patrimony (=RPPN) Feliciano Miguel Abdala, (B) Estação Ecológica do Tripui, (C) Parque Estadual do Itacolomi, (D) Parque Nacional das Sempre-Vivas, (E) Piedade de Caratinga, (F) Santa Barbara do Leste, (G) RPPN Mata do Sossego, (H) RPPN Fazenda Macedônia, (I) Parque Estadual do Rio Doce, (J) RPPN Estação Ambiental de Peti, (K) Serra da Moeda, (L) Parque Estadual do Ibitipoca, (M) Bom Jardim de Minas, (N) Serra do Cipó, and (O) Serra de Ouro Branco (see Table 1 for more details, including GPS data).
FIGURE 2 in Phylogenetic relationships of the gecko genus Carinatogecko (Reptilia: Gekkonidae)
FIGURE 2. Carinatogecko cf. heteropholis (REPT/IRA/1139); head in detail: a—dorsal view, b—ventral view.
FIGURE 1 in Unravelling phylogenetic relationships among regionally co-existing species: Hydropsyche species (Trichoptera: Hydropsychidae) in the Loire River
FIGURE 1. Coding of character states of measured data, using graphic software (see text) to identify discontinuities at larger gaps in the data (a) or to delete characters that did not collapse into groupings separated by clear discontinuities (b) (see Appendix 2 for details on characters).
FIGURE 2 in Unravelling phylogenetic relationships among regionally co-existing species: Hydropsyche species (Trichoptera: Hydropsychidae) in the Loire River
FIGURE 2. Phylogenetic tree (maximum parsimony topology) based on analysis of fragments of cytochrome oxidase subunit I (COI) and 16S ribosomal RNA (16S), with bootstrap values (BVs in %) in normal font and posterior probabilities (PPs in %) in italics (see Table 1 for species acronyms).
Figure 14. Pruned maximum credibility Bayesian trees. Dataset C in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 14. Pruned maximum credibility Bayesian trees. Dataset C based on the matrix from Evers & Benson (2019). Dataset D based on matrix from Evers & Benson (2019) with added characters found in this study. Colours at nodes represent base of clades. Numbers at the node show posterior probability value of node.
Figure 12 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 12. Ventro-posterior-lateral view of Natator depressus (WAM R112123) (A) to highlight the foramen jugulare posterious, and Eretmochelys imbricata (WAM R120113) (B) for comparison. Displaying the states of character 2 based on the descriptor in the Appendix. Abbreviations: bas.con, basioccipital condyle; fn.po, fenestra postotica; for.ju.po, foramen jugulare posterious; for.mag, foramen magnum; for.ner.hyp, foramen nervi hypoglossi; fpcci, foramen posterior canalis cartotici. Scale bars = 20mm.
Figure 13. Maximum credibility Bayesian trees. Dataset A in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 13. Maximum credibility Bayesian trees. Dataset A based on the matrix from Evers & Benson (2019). Dataset B based on matrix from Evers & Benson (2019) with added characters found in this study. Different colours at nodes represent base of clades. Numbers at the node show posterior probability value of node.
Figure 10 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 10. Antero-medial view of braincase of Natator depressus (WAM R112123) (A) and Lepidochelys olivacea (SAMA BM670) (B) showing the closed (A) and open (B) states of the medial foramen nervi acustici. Abbreviations: for.ner.ac, foramen nervi acustici; for.ner.hy, foramen nervi hypoglossi; hia.acu, hiatus acusticus. Scale bars = 20mm.
Figure 9 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 9. Parasagital cross-section of Natator depressus (WAM R112123). A, D, skull, exposing the lateral wall of the braincase. B, C, represent the lateral wall of the braincase of Chelonia mydas (SAMA Unregistered) and Lepidochelys olivacea (SAMA BM670), respectively. A, the original surface file; B, the surface file redrawn and labelled. Areas which are 'cut through' are shaded with diagonal lines. Displaying the states of characters 1, 3, 7, based on the descriptors in the Appendix. Abbreviations: BO, basioccipital; BS, basisphenoid; EPT, epipterygoid; EX, exoccipital; for.ner.hyp., foramen nervi hypoglossi; for.ner.tri., foramen nervi trigemini; for.jug.ant.,foramen jugulare anterius; hia.acu., hiatus acousticus; OP, opisthotic; PAR, parietal; PT, pterygoid; PRO, prootic: SUP, supraoccipital. Scale bars = 20mm.
Figure 7 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 7. Dorsal view of the mandibles of the five extant extant cheloniid sea turtles. Images are of surface files constructed in Avizo lite 8.0. A, Natator depressus (WAM R112123). B, Chelonia mydas (NHMUK 1969.776) C, Eretmochelys imbricata (WAM R120113). D, Lepidochelys olivacea (SMNS 11070). E, Caretta caretta (SAM unregistered). Abbreviations: ANG, angular; ART, articular; COR, coronoid; DEN, dentary; fs.mk, fossa Makelii; Scale bar = 50mm.
Figure 4 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 4. Ventral view of the five genera of extant cheloniid sea turtles. Images are of surface files constructed in Avizo lite 8.0. A, Natator depressus (WAM R112123). B, Chelonia mydas (SAMA unregistered). C, Eretmochelys imbricata (WAM R120113). D, Lepidochelys olivacea (SAMA BM670). E, Caretta caretta (SAM unregistered). Abbreviations: BO, basioccipital; BS, basisphenoid; EX, exoccipital; fo.te.in, fossa temporalis inferior; JUG, jugal; MX, maxilla; PAL, palatine; PMX, premaxilla; PT, pterygoid; QU, quadrate; VO, vomer. Scale bar = 50mm.
Figure 28 in Scelidosaurus harrisonii (Dinosauria: Ornithischia) from the Early Jurassic of Dorset, England: biology and phylogenetic relationships
Figure 28. Simplified theropod phylogeny. All tetanuran theropods have gastralia; these are only lost in true birds (n.gast). The orientation of the pubis varies across these clades and is dependent upon multiple factors: dietary preference (herbivory, omnivory, carnivory); body proportions (notably the reduction in length and mass of the tail); and more specific locomotor adaptations and habits of individual theropods within each subclade. There is no simple and unambiguous correspondence between pelvic structure and posture, habit, locomotor style or putative diet and respiratory mechanics. Dinosaur images kindly provided by Scott Hartman, who retains the copyright of each. As illustrated here these animals are not strictly to the same scale. The raptor silhouette was made available through the following website: http://clipart-library.com/bird-silhouette.html
Figure 2 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 2. Lateral view of the five genera of extant cheloniid sea turtles. Images are of surface files constructed in Avizo lite 8.0. A, Natator depressus(WAM R112123). B, Chelonia mydas (SAMA unregistered). C, Eretmochelys imbricata (WAM R120113). D, Lepidochelys olivacea (SAMA BM670). E, Caretta caretta (SAM unregistered). Displaying the states of characters 5, 6, 8, 9, 10, based on the descriptors in the Appendix. Abbreviations: FR, frontal; JUG, jugal; MX, maxilla; orb, orbital opening; PAR, parietal; PMX, premaxilla; PORB, postorbital; PRFR, prefrontal; QJ, quadratojugal; QU, quadrate; SQ, squamosal; su.ju.ri, superficial jugal ridge; SUP, supraoccipital. Scale bars = 50 mm.
Figure 6 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 6. Lateral and medial view of the five genera of the mandibles extant cheloniid sea turtles. Images are of surface files constructed in Avizo lite 8.0. A, Natator depressus (WAM R112123). B, Chelonia mydas (NHMUK 1969.776). C, Eretmochelys imbricata (WAM R120113). D, Lepidochelys olivacea (SMNS 11070). E, Caretta caretta (SAM unregistered). Abbreviations: ANG, angular; ART, articular; COR, coranoid; DEN, dentary; for.dent.maj, foramen dento faciale majus; fs.mk, fossa Makelii; lb.rid, labial ridge; lin.ridge; lingual ridge; mek.gro, Meckelian groove; PRA, prearticular; SUR, surangular. Scale bar = 50mm.
Figure 1 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 1. The current consensus for the phylogenetic relationships between extant sea turtles. The different colours represent the base of the groups in extant sea turtles. Redrawn from Duchene et al., 2012. Silhouettes redrawn from Jones et al. (2012).
Figure 5 in Redescription of the skull of the Australian flatback sea turtle, Natator depressus, provides new morphological evidence for phylogenetic relationships among sea turtles (Chelonioidea)
Figure 5. Posterior view of the five genera of extant cheloniid sea turtles. Images are of surface files constructed in Avizo lite 8.0. A, Natator depressus (WAM R112123). B, Chelonia mydas (SAMA unregistered). C, Eretmochelys imbricata (WAM R120113). D, Lepidochelys olivacea (SAMA BM670). E, Caretta caretta (SAMA unregistered). Abbreviations: BO, basioccipital; EX, exoccipital; fn.po, fenestra postoticus; fr.mg, foramen magnum; fr.ner.hyp, foramen nervi hypoglossi; fs.te.su, fossa temporalis superior; OP, opsithotic; PR, prootic; PT, pterygoid; SQ, squamosal; SUP, supraoccipital. Scale bar = 50mm.
Figure 13 in Scelidosaurus harrisonii (Dinosauria: Ornithischia) from the Early Jurassic of Dorset, England: biology and phylogenetic relationships
Figure 13. Partially transparent neurocranium to show the approximate structure of the brain, the principal cranial nerves and blood vessels. Abbreviations: c.art, carotid artery; Cbl, cerebellum; Ce, cerebral lobes; cn. (Roman), cranial nerve; jug.v, jugular vein; med, medulla (brain stem); p, pituitary body. Dotted outline – approximate profile of the endocranial cavity.
Figure 15. Scelidosaurus. The principal jaw adductor muscles identified. A, dorsal muscle origin map. B–D in Scelidosaurus harrisonii (Dinosauria: Ornithischia) from the Early Jurassic of Dorset, England: biology and phylogenetic relationships
Figure 15. Scelidosaurus. The principal jaw adductor muscles identified. A, dorsal muscle origin map. B–D, muscle reconstructions. Abbreviations: AN.OR, m. anguli oris; bod, bodenaponeurosis; MAMEM, m. adductor mandibulae externus medialis; MAMEP, profundus; MAMES, superficialis; MAMP, posterior; MLPt, levator pterygoideus; MPST, pseudotemporalis; MPT, pterygoideus.
Figure 14 in Scelidosaurus harrisonii (Dinosauria: Ornithischia) from the Early Jurassic of Dorset, England: biology and phylogenetic relationships
Figure 14. Varanus exanthematicus (Bosc, 1792). Mapping the areas of origin and insertion of the principal jaw closing muscles in a living sauropsid. A, lateral. B, oblique dorsolateral. C. lower jaw in oblique dorsolateral aspect (redrawn from Holliday, 2009: fig. 1). Abbreviations: MAMEM, m. adductor mandibulae externus medialis; MAMEP, profundus; MAMES, superficialis; MAMP, posterior; MLPt, levator pterygoideus; MPPt, protractor pterygoideus; MPST, pseudotemporalis; MPT, pterygoideus.
Figure 12 in Scelidosaurus harrisonii (Dinosauria: Ornithischia) from the Early Jurassic of Dorset, England: biology and phylogenetic relationships
Figure 12. Scelidosaurus. Diagrammatic lateral view of the neurocranium, showing the identifiable cranial nerve foramina and fossae. Abbreviations: Bo, basioccipital; bot, basioccipital tuberosity; bpt, basipterygoid process; Bs, basisphenoid; cart, cartilage; cn.(Roman), cranial nerves; fo, fenestra ovalis; fr, fenestra rotunda; Ls, laterosphenoid; Op, opisthotic; Os, orbitosphenoid; P, parietal; Pro, proötic; Ps, parasphenoid (cultriform process); vag-jug, foramen occupied by cranial nerves (vagus) and venous blood vessels (jugular vein); vcd, fissure for passage of the vena capitis dorsalis; vid, vidian (= carotid artery) canal.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.