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zenodo32/100

Data used in "Land use change influence on atmospheric organic gases, aerosols, and radiative effects" (Vella et al., 2024)

<p>Model outputs used in the study: "Land use change influence on atmospheric organic gases, aerosols, and radiative effects"</p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

Soil Moisture Dominates the Land Surface Feedback in the Development of Compound Drought-Heat Extremes in Tropical South America (Part 3)

<p>This dataset is for a <em>JHM</em>&nbsp;(<em>Journal of Hydrometeorology</em>) paper, titled "<strong>Soil Moisture Dominates the Land Surface Feedback in the Development of Compound Drought-Heat Extremes in Tropical South America</strong>".</p>

opencc-by-4.0Aug 2024View details →
zenodo32/100

Soil Moisture Dominates the Land Surface Feedback in the Development of Compound Drought-Heat Extremes in Tropical South America (Part 2)

<p>This dataset is for a <em>JHM</em>&nbsp;(<em>Journal of Hydrometeorology</em>) paper, titled "<strong>Soil Moisture Dominates the Land Surface Feedback in the Development of Compound Drought-Heat Extremes in Tropical South America</strong>".</p>

opencc-by-4.0Aug 2024View details →
zenodo32/100

Soil Moisture Dominates the Land Surface Feedback in the Development of Compound Drought-Heat Extremes in Tropical South America (Part 1)

<p>This dataset is for a <em>JHM</em>&nbsp;(<em>Journal of Hydrometeorology</em>) paper, titled "<strong>Soil Moisture Dominates the Land Surface Feedback in the Development of Compound Drought-Heat Extremes in Tropical South America</strong>".</p>

opencc-by-4.0Aug 2024View details →
zenodo32/100

Datasets and code used to generate the figures in the article "Influence of Forest Cover Loss on Land Surface Temperature Differs by Drivers in China"

<p>We have provided the data and code used to generate the figures in the article "Influence of Forest Cover Loss on Land Surface Temperature Differs by Drivers in China" for reference and further reading. These data can be used to replicate the analyses presented in the paper. If you wish to use the data for other purposes, please contact the authors for permission. Thank you.</p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

Supplementary material for "Strong decline in grasshopper abundance over 20 years without major land-use changes: Is soil drying one of the drivers?»

<p><strong>Abstract</strong></p> <p><span>Strong declines in insect numbers have been described for different taxa and regions. These observations are of great concern such that broad scientific and public attention has been raised. Among other urgencies, the need for long-term insect data has been identified. Here, we present data on grasshopper (Caelifera) abundances recorded between 1992 and 2011 at over 600 sites in north-western Switzerland. While vegetation type, often semi-natural grasslands, had remained largely constant, total grasshopper abundance declined by around 50% (while many other taxa showed much less decline). Numbers in July remained relatively stable until about 2003 but then declined similar to the declines seen in August-October already before. Greatest losses were observed for drier habitats and steeper slopes, suggesting that soil drying might be an important factor for the decline. Second, more nutrient-rich habitats suffered greater losses; possible reasons for this include small-scale vegetation changes in these habitats e.g. due to atmospheric nitrogen deposition, or isolation of sites. Other than abundance, species richness decreased much less, illustrating that important ecological changes may be strongly underestimated when only species lists are available. The strong declines at our sites, which often are in an agri-environmental scheme, is alarming. Apart from being yet another call to fight climate change, our results also point to the urgent need to reduce atmospheric nitrogen deposition and to continue extensive farming, but also to adapt it in preparation of expected effects of climate change, with the aim to favour a divers, ecologically robust insect community.</span></p> <p><span>&nbsp;</span></p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

Results and plotting scripts for the manuscript 'SuCCESs – a global IAM for exploring the interactions between energy, materials, land-use and climate systems in long-term scenarios'

<p><br>This archives the results for the manuscript 'SuCCESs &ndash; a global IAM for exploring the interactions between energy, materials, land-use and climate systems in long-term scenarios'</p> <p>For the model version used to create these results, please see: https://doi.org/10.5281/zenodo.13981520</p> <p>Files to reproduce the figures, in R language:<br>SuCCESs validation.R - Reads GDX files and produces plots for energy and emissions.<br>SuCCESs validation MC.R - The same, but with the Monte Carlo GDXs.</p> <p>External data sources:</p> <p>***<br>GHG emissions are from IGCC and PRIMAP</p> <p>IGCC:&nbsp;https://climatechangetracker.org/igcc (CC-BY license)</p> <p>PRIMAP:<br>G&uuml;tschow, Johannes; Jeffery, M. Louise; Gieseke, Robert; Gebel, Ronja; Stevens, David; Krapp, Mario; Rocha, Marcia (2016): The PRIMAP-hist national historical emissions time series, Earth Syst. Sci. Data, 8, 571-603, https://doi.org/10.5194/essd-8-571-2016<br>G&uuml;tschow, Johannes ; Busch, Daniel ; Pfl&uuml;ger, Mika (2024): The PRIMAP-hist national historical emissions time series (1750-2023) v2.6. Zenodo. https://doi.org/10.5281/zenodo.13752654<br>https://primap.org/primap-hist/ (CC-BY-4.0 license)</p> <p>***<br>Historical energy production and use data are from IEA Energy Statistics Data Browser (CC BY 4.0 licence).<br>https://www.iea.org/data-and-statistics/data-tools/energy-statistics-data-browser?country=WORLD&amp;fuel=CO2%20emissions&amp;indicator=CO2BySource</p> <p>***<br>IAM results are from the SSP database: https://tntcat.iiasa.ac.at/SspDb&nbsp;</p> <p>Keywan Riahi, Detlef P. van Vuuren, Elmar Kriegler, Jae Edmonds, Brian C. O&rsquo;Neill, Shinichiro Fujimori, Nico Bauer, Katherine Calvin, Rob Dellink, Oliver Fricko, Wolfgang Lutz, Alexander Popp, Jesus Crespo Cuaresma, Samir KC, Marian Leimbach, Leiwen Jiang, Tom Kram, Shilpa Rao, Johannes Emmerling, Kristie Ebi, Tomoko Hasegawa, Petr Havl&iacute;k, Florian Humpen&ouml;der, Lara Aleluia Da Silva, Steve Smith, Elke Stehfest, Valentina Bosetti, Jiyong Eom, David Gernaat, Toshihiko Masui, Joeri Rogelj, Jessica Strefler, Laurent Drouet, Volker Krey, Gunnar Luderer, Mathijs Harmsen, Kiyoshi Takahashi, Lavinia Baumstark, Jonathan C. Doelman, Mikiko Kainuma, Zbigniew Klimont, Giacomo Marangoni, Hermann Lotze-Campen, Michael Obersteiner, Andrzej Tabeau, Massimo Tavoni.<br>The Shared Socioeconomic Pathways and their energy, land use, and greenhouse gas emissions implications: An overview, Global Environmental Change, Volume 42, Pages 153-168, 2017,<br>DOI:110.1016/j.gloenvcha.2016.05.009</p> <p>Rogelj, J., Popp, A., Calvin, K.V., Luderer, G., Emmerling, J., Gernaat, D., Fujimori, S., Strefler, J., Hasegawa, T., Marangoni, G., Krey, V., Kriegler, E., Riahi, K., van Vuuren, D.P., Doelman, J., Drouet, L., Edmonds, J., Fricko, O., Harmsen, M., Havlik, P., Humpen&ouml;der, F., Stehfest, E., Tavoni, M., Scenarios towards limiting global mean temperature increase below 1.5 &deg;C. Nature Climate Change 8, 2018, 325-332.<br>DOI:10.1038/s41558-018-0091-3</p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

Four-dimensional aircraft emission inventory dataset of Landing and take-off cycle in China from 2019 to 2023

<p>Aircraft emissions during landing and takeoff (LTO) having unique three-dimensional spatial characteristics and typical hourly temporal variations. In order to further investigate the adverse effects of aircraft emissions, the adverse effects for aircraft emissions, this study integrated the emission calculation and flight trajectory recognition methods to establish a four-dimensional aircraft emission inventory dataset of China&rsquo;s LTO cycle (4D-LTO emission inventory dataset) from 2019 to 2023. The dataset has a high spatial-temporal resolution (hourly, 0.03&deg; &times; 0.03&deg; &times; 34 height layers).</p> <p>Information for 4D-LTO emission inventory dataset during 2019-2023:</p> <p>Species: NOx.</p> <p>Number of airports included in different years: 2019 (237 airports), 2020 (239 airports), 2021 (248 airports), 2022 (254 airports), 2023 (257 airports).</p> <p>Temporal information: 2019 (8760 hours), 2020 (8784 hours), 2021 (8760 hours), 2022 (8760 hours), 2023 (8760 hours).</p> <p>Spatial information: The horizontal resolution of the 4D-LTO emission inventory is 0.03&deg; &times; 0.03&deg; with the latitude and longitude range of 3.40&deg;N&ndash;53.56&deg;N and 73.44&deg;E&ndash;135.09&deg;E, respectively. The altitude resolution was divided into 34 layers from 0 m to 15668 m (0.0 m&ndash;38.3 m, 38.3 m&ndash;76.7 m, 76.7 m&ndash;115.3 m, 115.3 m&ndash;154 m, 154 m&ndash;231.8 m, 231.8 m&ndash;310.3 m, 310.3 m&ndash;389.3 m, 389.3 m&ndash;469 m, 469 m&ndash;549.3 m, 549.3 m&ndash;630.3 m, 630.3 m&ndash;711.9 m, 711.9 m&ndash;794.2 m, 794.2 m&ndash;960.7 m, 960.7 m&ndash;1130.1 m, 1130.1 m&ndash;1302.3 m, 1302.3 m&ndash;1477.6 m, 1477.6 m&ndash;1656.0 m, 1656.0 m&ndash;1929.7 m, 1929.7 m&ndash;2211.1 m, 2211.1 m&ndash;2599.3 m, 2599.3 m&ndash;3107.2 m, 3107.2 m&ndash;3643.1 m, 3643.1 m&ndash;4210.5 m, 4210.5 m&ndash;4813.9 m, 4813.9 m&ndash;5458.5 m, 5458.5 m&ndash;6151.2 m, 6151.2 m&ndash;6900.4 m, 6900.4 m&ndash;7717.4 m, 7717.4 m&ndash;8617.3 m, 8617.3 m&ndash;9621.2 m, 9621.2 m&ndash;10759.7 m, 10759.7 m&ndash;12080.6 m, 12080.6 m&ndash;13664.8 m, 13664.8 m&ndash;15668 m.).</p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

Annual 30 m land cover dataset on the Tibetan Plateau from 1990 to 2023

<p><span>TPLUCD provide</span><span>d</span><span> an annually updated land use and cover dataset for the Tibetan Plateau from 1990 to 2023, with a spatial resolution of 30 m, using the WGS-84 as the spatial reference, and publicly available in GeoTIFF format. The values range</span><span>d</span><span> from 1 to 10, corresponding to the following land use types: 1 for cropland, 2 for forest, 3 for shrubland, 4 for alpine steppe, 5 for alpine meadow, 6 for water bodies, 7 for bare land, 8 for impervious surfaces, 9 for wetlands, and 10 for snow/ice.</span></p>

opencc-by-4.0Jul 2024View details →
zenodo32/100

Data for "Agrivoltaics could increase global land use efficiency compared to bioenergy"

Open the record for dataset details and reuse information.

opencc-by-4.0Oct 2024View details →
zenodo32/100

Towards the conservation of Brazilian legumes: Summary, land cover and use analytics, and a comparative analysis of locations count methods (curated vs. automated [buffer-dissolution])

<p>This dataset presents key findings from the study "<strong>Automating and Enhancing Species Extinction Risk Assessments with Historical Land Use and Land Cover Data</strong>."</p> <p>The file `<em>summary-threatened-legume-species.ods</em>` provides a summary of all threatened species of the Leguminosae family native to Brazil, including IUCN category and criteria, location counts, and the year of the latest assessment, sourced from official records. Additionally, it includes calculated values for Area of Occupancy (AOO) and Extent of Occurrence (EOO), along with trend data indicating natural area change rates (decline [positive number, red] or growth [negative number, green]) within both AOO and EOO. Location counts are further detailed across various buffer radii (1-5 km), utilizing a buffer-dissolution method for automated location counting. Each buffer radius is analyzed to assess AOO and EOO decline, where '1' indicates a species is threatened and '0' indicates it is not. This data provides an efficient method for screening threatened species under criterion B of the IUCN Red List guidelines.</p> <p>The file `<em>overlay-analysis.ods</em>` contains overlay analysis results for AOO and EOO of each species using MapBiomas land use and land cover (LULC) data (specifically MapBiomas Brazil, collection 7.1) from 1985 to 2021, covering all threatened legume species. This file provides both absolute area in square kilometers and percentages for each LULC class. The overlay analysis results support estimates of growth and decline trends for each LULC class.</p> <p>The file `<em>trend-analysis.ods</em>` presents results of annual rate estimates from trend analysis across LULC classes, and including both natural and anthropic groupings. A complete JSON database with p-values and R&sup2; values is provided in `<em>trend-analysis.json</em>`.</p> <p>This approach, combining all results for each species in a comprehensive, merged dataset, allows for effective filtering and ranking of the most threatened species as well as identification of their primary threats.</p> <p>We recommend opening the ODS files with LibreOffice, as Microsoft Excel may experience issues parsing decimal formats accurately.</p> <p>More detailed maps and graphs are available at <a title="LULC-MapBiomas-Leguminosae" href="https://github.com/lsbjordao/LULC-MapBiomas-Leguminosae" target="_blank" rel="noopener">https://github.com/lsbjordao/LULC-MapBiomas-Leguminosae</a>.</p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

Global subnational landed cost of grains and oilseeds

<p>Dataset of landed cost of traded grains and oilseeds for subnational administrative regions globally. This dataset and code allows reproducing the results and figures of the paper <em>Verschuur, Vittis, Obersteiner and Hall (2024), "Heterogeneities in landed costs of traded grains and oilseeds contribute to unequal food access", Nature Food.&nbsp;</em></p> <p>This repository includes the following folders and files:</p> <p>-All input data to reproduce the results and figures in the paper.</p> <p>-A Readme File explaining all the data variables in the input data.&nbsp;</p> <p>-A Jupyter Notebook to load the data and reproduce the results and figures in the paper.&nbsp;</p>

opencc-by-4.0Nov 2024View details →
zenodo32/100

A global land-use data cube 1992-2020 based on the Human Appropriation of Net Primary Production: Dataset 3

<p>This dataset is part of the LUIcube, a global dataset on land-use at 30 arcsecond spatial resolution. The LUIcube includes information on area, the change in NPP due to land conversions (HANPP<sub>luc</sub>), the harvested NPP (including losses, HANPP<sub>harv</sub>), and the NPP remaining in ecosystems after harvest (NPP<sub>eco</sub>) for 32 land-use classes in annual time-steps from 1992 to 2020. A detailed description of the LUIcube is available in the accompanying publication.</p> <p>The layers of land-use areas are provided in square kilometers (km&sup2;) per grid cell. All NPP flows are provided in tC/yr per grid cell. Adding HANPP<sub>harv</sub> to NPP<sub>eco</sub> results in the actual NPP available before harvest (NPP<sub>act</sub>=NPP<sub>eco</sub>+HANPP<sub>harv</sub>), and adding HANPP<sub>luc</sub> to NPP<sub>act</sub> results in the potential NPP available in the hypothetical absence of land use (NPP<sub>pot</sub>=NPP<sub>act</sub>+HANPP<sub>luc</sub>) for the given land-use class. Area-intensive values (in gC/m&sup2;/yr) can be calculated by dividing the NPP flows by the area of the respective land-use class per grid cell. HANPP in % of NPP<sub>pot</sub> can be calculated by summing up HANPP<sub>harv</sub> and HANPP<sub>luc</sub> and dividing it by NPP<sub>pot</sub>. Areas and NPP flows of land-use classes can be aggregated to calculate their overall HANPP.</p> <p>This Zenodo repository provides data on following land-use classes: grazing land with (almost) no trees (GL-notrees); cropland used for production of other fibres (CL-OFIB); fallow cropland areas (CL-FALL)</p>

opencc-by-4.0Oct 2024View details →
zenodo32/100

High quality figures of "Global Assessment of Atmospheric Forcing Uncertainties in The Common Land Model 2024 Simulations"

<p>This repository provides the figures for the publication "Global Assessment of Atmospheric Forcing Uncertainties in The Common Land Model 2024 Simulations" in their original resolution, ensuring clarity the high-quality visual representations for readers.</p>

opencc-by-4.0Aug 2024View details →
dryad32/100

Data from: Land-use type and intensity differentially filter traits in above- and belowground arthropod communities

1. Along with the global decline of species richness goes a loss of ecological traits. Associated biotic homogenization of animal communities and narrowing of trait diversity threaten ecosystem functioning and human well-being. High management intensity is regarded as an important ecological filter, eliminating species that lack suitable adaptations. Belowground arthropods are assumed to be less sensitive to such effects than aboveground arthropods. 2. Here, we compared the impact of management intensity between (grassland vs. forest) and within land-use types (local management intensity) on the trait diversity and composition in below- and aboveground arthropod communities. 3. We used data on 722 arthropod species living above ground (Auchenorrhyncha and Heteroptera), primarily in soil (Chilopoda and Oribatida) or at the interface (Araneae and Carabidae). 4. Our results show that trait diversity of arthropod communities is not primarily reduced by intense local land use, but is rather affected by differences between land-use types. Communities of Auchenorrhyncha and Chilopoda had significantly lower trait diversity in grassland habitats as compared to forests. Carabidae showed the opposite pattern with higher trait diversity in grasslands. Grasslands had a lower proportion of large Auchenorrhyncha and Carabidae individuals, whereas Chilopoda and Heteroptera individuals were larger in grasslands. Body size decreased with land-use intensity across taxa, but only in grasslands. The proportion of individuals with low mobility declined with land-use intensity in Araneae and Auchenorrhyncha, but increased in Chilopoda and grassland Heteroptera. The proportion of carnivorous individuals increased with land-use intensity in Heteroptera in forests and in Oribatida and Carabidae in grasslands. 5. Our results suggest that gradients in management intensity across land-use types will not generally reduce trait diversity in multiple taxa, but will exert strong trait filtering within individual taxa. The observed patterns for trait filtering in individual taxa are not related to major classifications into above- and belowground species. Instead, ecologically different taxa resembled each other in their trait diversity and compositional responses to land-use differences. These previously undescribed patterns offer an opportunity to develop management strategies for the conservation of trait diversity across taxonomic groups in permanent grassland and forest habitats.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams

Agricultural land use is a primary driver of environmental impacts on streams. However, the causal processes that shape these impacts operate through multiple pathways and at several spatial scales. This complexity undermines the development of more effective management approaches, and illustrates the need for more in-depth studies to assess the mechanisms that determine changes in stream biodiversity. Here we present results of the most comprehensive multi-scale assessment of the biological condition of streams in the Amazon to date, examining functional responses of fish assemblages to land use. We sampled fish assemblages from two large human-modified regions, and characterized stream conditions by physical habitat attributes and key landscape-change variables, including density of road crossings (i.e. riverscape fragmentation), deforestation, and agricultural intensification. Fish species were functionally characterized using ecomorphological traits describing feeding, locomotion, and habitat preferences, and these traits were used to derive indices that quantitatively describe the functional structure of the assemblages. Using structural equation modeling, we disentangled multiple drivers operating at different spatial scales, identifying causal pathways that significantly affect stream condition and the structure of the fish assemblages. Deforestation at catchment and riparian network scales altered the channel morphology and the stream bottom structure, changing the functional identity of assemblages. Local deforestation reduced the functional evenness of assemblages (i.e. increased dominance of specific trait combinations) mediated by expansion of aquatic vegetation cover. Riverscape fragmentation reduced functional richness, evenness and divergence, suggesting a trend toward functional homogenization and a reduced range of ecological niches within assemblages following the loss of regional connectivity. These results underscore the often-unrecognized importance of different land use changes, each of which can have marked effects on stream biodiversity. We draw on the relationships observed herein to suggest priorities for the improved management of stream systems in the multiple-use landscapes that predominate in human-modified tropical forests.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Response of net primary production to land use and climate changes in the middle-reaches of the Heihe River basin

Net primary production (NPP) supplies matter, energy, and services to facilitate the sustainable development of human society and ecosystem. The response mechanism of NPP to land use and climate changes is essential for food security and biodiversity conservation but lacks a comprehensive understanding, especially in arid and semi-arid regions. To this end, taking the middle-reaches of the Heihe River basin (MHRB) as an example, we uncovered the NPP responses to land use and climate changes by integrating multi-source data (e.g., MOD17A3 NPP, land use, temperature, and precipitation) and multiple methods. The results showed that: (1) land use intensity (LUI) increasing, and climate warming and wetting promoted NPP. From 2000 to 2014, the LUI, temperature and precipitation of MHRB increased by 1.46, 0.58 °C and 15.76 mm, respectively, resulting in an increase of 14.62 gC/m2 in annual average NPP. (2) The conversion of low-yield cropland to forest and grassland increased NPP. Although the widespread conversion of unused land and grassland to cropland boosted both LUI and NPP, it was not conducive to ecosystem sustainability and stability due to huge water consumption and human-appropriated NPP. Urban sprawl occupied cropland, forest and grassland, and reduced NPP. (3) Increase in temperature and precipitation generally improved NPP. The temperature decreasing less than 1.2 °C also promoted the NPP of hardy vegetation due to the simultaneous precipitation increasing. However, warming-induced water stress compromised the NPP in arid sparse grassland and deserts. Cropland had greater NPP and NPP increase than natural vegetation due to the irrigation, fertilizers and other artificial inputs it received. Decrease in both temperature and precipitation generally reduced NPP, but the NPP in the well-protection or less-disturbance areas still increased slightly.

opencc-zeroDec 2018View details →
dryad32/100

Data from: Phylogeography of Bornean land snails suggests long-distance dispersal as a cause of endemism

Aim: Islands are often hotspots of endemism due to their isolation, making colonization a rare event, and hence facilitating allopatric speciation. Dispersal usually occurs between nearby locations according to a stepping-stone model. We aimed to reconstruct colonization and speciation processes in an endemic-rich system of land-based islands that does not seem to follow the obvious stepping-stone model of dispersal. Location: Five land-based habitat archipelagos of limestone outcrops in the floodplain of the Kinabatangan River in Sabah, Malaysian Borneo. Methods: We studied the phylogeography of three species complexes of endemic land snails, using multiple genetic markers. We calculated genetic distances between populations, applied BEAST2 to reconstruct phylogenies for each taxon, and subsequently reconstructed ancestral ranges using 'BIOGEOBEARS'. Results: We found spatial genetic structure among nearby locations to be highly pronounced for each taxon. Genetic correlation was present at small spatial scales only, and disappeared at distances of five kilometres and above. Most archipelagos have been colonized from within the region multiple times over the past three million years, in 78% of cases as a result of long-distance dispersal or dispersal from non-adjacent limestone outcrops. The flow of the main geographical feature within the region, the Kinabatangan River, did not play a role. Main conclusions: Phylogeographic structure in these Bornean land snails has only partly been determined by small-scale dispersal, where it leads to isolation-by-distance, but mostly by long-distance dispersal. Our results demonstrate that island endemic taxa only very locally follow a simple stepping-stone model, whilst dispersal to non-adjacent islands, and especially long-distance dispersal, is most important. This leads to the formation of highly localized, isolated "endemic populations" forming the onset of a complex radiation of endemic species.

opencc-zeroDec 2018View details →
dryad32/100

Data from: A global database and 'state of the field' review of research into ecosystem engineering by land animals.

1. Ecosystem engineers have been widely studied for terrestrial systems, but global trends in research encompassing the range of taxa and functions have not previously been synthesised. 2. We synthesised contemporary understanding of engineer fauna in terrestrial habitats and assessed the methods used to document patterns and processes, asking: 1.Which species act as ecosystem engineers and with whom do they interact? 2. What are the impacts of ecosystem engineers in terrestrial habitats and how are they distributed? 3. What are the primary methods used to examine engineer effects and how have these developed over time? We considered the strengths, weaknesses and gaps in knowledge related to each of these questions, and suggested a conceptual framework to delineate 'significant impacts' of engineering interactions for all terrestrial animals. 3. We collected peer-reviewed publications examining ecosystem engineer impacts and created a database of engineer species to assess experimental approaches and any additional covariates that influenced the magnitude of engineer impacts. 4. One hundred and twenty-two species from twenty-eight orders were identified as ecosystem engineers, performing five ecological functions. Burrowing mammals were the most researched group (27%). Half of all studies occurred in dry/arid habitats. Mensurative studies comparing sites with and without engineers (80%) were more common than manipulative studies (20%). These provided a broad framework for predicting engineer impacts upon abundance and species diversity. However, the roles of confounding factors, processes driving these patterns, and the consequences of experimentally adjusting variables, such as engineer density, have been neglected. True spatial and temporal replication have also been limited, particularly for emerging studies of engineer reintroductions. 5. Climate change and habitat modification will challenge the roles that engineers play in regulating ecosystems, and these will become important avenues for future research. We recommend future studies include simulation of engineer effects and experimental manipulation of engineer densities to determine the potential for ecological cascades through trophic and engineering pathways due to functional decline. We also recommend improving knowledge of long-term engineering effects and replication of engineer reintroductions across landscapes to better understand how large-scale ecological gradients alter the magnitude of engineering impacts.

opencc-zeroDec 2017View details →
dryad32/100

Evaluating species delimitation methods in radiations: The land snail Albinaria cretensis complex on Crete

<p>Delimiting species in radiations is notoriously difficult because of the small differences between the incipient species, the star-like tree with short branches between species, incomplete lineage sorting, and the possibility of introgression between several of the incipient species. Next generation sequencing data may help to overcome some of these problems. We evaluated methods for species delimitation based on genome-wide markers in a land snail radiation on Crete. Species delimitation in the <i>Albinaria</i> <i>cretensis</i> group was based exclusively on shell characters until now and resulted in classifications distinguishing 3–9 species. We generated sequences of 4270 loci for 140 specimens of the <i>Albinaria</i> <i>cretensis</i> group from 48 populations by double-digest restriction site-associated DNA sequencing. We evaluated three methods for species discovery. The multispecies coalescent approach implemented in the program Bayesian Phylogenetics and Phylogeography resulted in a drastic overestimating of the number of species, whereas Gaussian clustering resulted in an overlumping. Primary species hypotheses based on the maximum percentage of the genome of the individuals derived from ancestral populations as estimated with the program <span>ADMIXTURE</span> moderately overestimated the number of species, but this was the only approach that provided information about gene flow between groups. Two of the methods for species validation that we applied, BFD* and delimitR, resulted in an acceptance of almost all primary species hypotheses, even such based on arbitrary subdivisions of hypotheses based on <span>ADMIXTURE.</span> In contrast, secondary species hypotheses, resulting from an evaluation of primary species hypotheses based on <span>ADMIXTURE</span> with isolation by distance tests, approached the morphological classification, but also uncovered two cryptic species and indicated that some of the previously delimited units should be combined. Thus, we recommend this combination of approaches that provided more detailed insights in the distinctness of barriers between the taxa of a species complex and the spatial distribution of admixture between them than the other methods. The recognition and delimitation of undersampled species remained a major challenge.</p>

opencc-zeroJun 2021View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.