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5,828 results for “Traits”

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Data from: Trait specific consequences of inbreeding on adaptive phenotypic plasticity

Environmental changes may stress organisms and stimulate an adaptive phenotypic response. Effects of inbreeding often interact with the environment and can decrease fitness of inbred individuals exposed to stress more so than that of outbred individuals. Such an interaction may stem from a reduced ability of inbred individuals to respond plastically to environmental stress; however, this hypothesis has rarely been tested. In this study, we mimicked the genetic constitution of natural inbred populations by rearing replicate Drosophila melanogaster populations for 25 generations at a reduced population size (10 individuals). The replicate inbred populations, as well as control populations reared at a population size of 500, were exposed to a benign developmental temperature and two developmental temperatures at the lower and upper margins of their viable range. Flies developed at the three temperatures were assessed for traits known to vary across temperatures, namely abdominal pigmentation, wing size, and wing shape. We found no significant difference in phenotypic plasticity in pigmentation or in wing size between inbred and control populations, but a significantly higher plasticity in wing shape across temperatures in inbred compared to control populations. Given that the norms of reaction for the noninbred control populations are adaptive, we conclude that a reduced ability to induce an adaptive phenotypic response to temperature changes is not a general consequence of inbreeding and thus not a general explanation of inbreeding–environment interaction effects on fitness components.

opencc-zeroDec 2013View details →
dryad32/100

Data from: Remote sensing of plant trait responses to field-based plant–soil feedback using UAV-based optical sensors

Plant responses to biotic and abiotic legacies left in soil by preceding plants is known as plant–soil feedback (PSF). PSF is an important mechanism to explain plant community dynamics and plant performance in natural and agricultural systems. However, most PSF studies are short-term and small-scale due to practical constraints for field-scale quantification of PSF effects, yet field experiments are warranted to assess actual PSF effects under less controlled conditions. Here we used unmanned aerial vehicle (UAV)-based optical sensors to test whether PSF effects on plant traits can be quantified remotely. We established a randomized agro-ecological field experiment in which six different cover crop species and species combinations from three different plant families (Poaceae, Fabaceae, Brassicaceae) were grown. The feedback effects on plant traits were tested in oat (Avena sativa) by quantifying the cover crop legacy effects on key plant traits: height, fresh biomass, nitrogen content, and leaf chlorophyll content. Prior to destructive sampling, hyperspectral data were acquired and used for calibration and independent validation of regression models to retrieve plant traits from optical data. Subsequently, for each trait the model with highest precision and accuracy was selected. We used the hyperspectral analyses to predict the directly measured plant height (RMSE  =  5.12 cm, R2  =  0.79), chlorophyll content (RMSE  =  0.11 g m−2, R2  =  0.80), N-content (RMSE  =  1.94 g m−2, R2  =  0.68), and fresh biomass (RMSE  =  0.72 kg m−2, R2  =  0.56). Overall the PSF effects of the different cover crop treatments based on the remote sensing data matched the results based on in situ measurements. The average oat canopy was tallest and its leaf chlorophyll content highest in response to legacy of Vicia sativa monocultures (100 cm, 0.95 g m−2, respectively) and in mixture with Raphanus sativus (100 cm, 1.09 g m−2, respectively), while the lowest values (76 cm, 0.41 g m−2, respectively) were found in response to legacy of Lolium perenne monoculture, and intermediate responses to the legacy of the other treatments. We show that PSF effects in the field occur and alter several important plant traits that can be sensed remotely and quantified in a non-destructive way using UAV-based optical sensors; these can be repeated over the growing season to increase temporal resolution. Remote sensing thereby offers great potential for studying PSF effects at field scale and relevant spatial-temporal resolutions which will facilitate the elucidation of the underlying mechanisms.

opencc-zeroDec 2016View details →
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Data from: Traits that allow bats of tropical lowland origin to conquer mountains: bat assemblages along elevational gradients in the South American Atlantic Forest

Aim: This study aims to contribute to the identification of ecological determinants of tropical moist forest montane biodiversity, analyzing changes in the structure of bat assemblages along an elevational gradient and testing the role of species traits shaping those assemblages. Location: Mountain ranges in the Brazilian Atlantic Forest. Methods: We compiled a dataset with the composition of phyllostomid bat assemblages at 32 forested sites, ranging from 60m to 1960m a.s.l. We quantified how abundance and diversity changed along this elevational gradient, and assessed the capacity of each species to be present and abundant at each elevation, identifying traits that may influence that capacity. Results: Abundance and species diversity declined markedly with increasing elevation. Tolerance to low temperatures, low habitat specialization, and cave roosting facilitated success at higher elevations. Owing to trait filtering, and to changes in resource availability with elevation, assemblages were progressively dominated by a smaller number of mostly generalist species as elevation increased. Higher elevations harbor only a subset of the species that are present in the lowland forest, with no mountain specialized species. Main conclusions: High mountains harbor phyllostomid assemblages that are impoverished subsets of those at lower elevations. Phyllostomids have a tropical origin and may thus have a low potential to adapt to montane forest environments, which possibly explains the observed climatic trait filtering. Habitat filtering is also important, keeping forest specialists mostly at lowest elevations. Protected areas in the Atlantic Forest are mostly limited to mountains. While these areas are clearly important to protect biodiversity, including phyllostomid assemblages, it is now critical to protect and restore the few remnants of lower elevation Atlantic Forest where higher productivity and resource levels, increased complexity of vertical structure, and fewer climatic constraints favor the success of a wider range of phyllostomid bat species of tropical origin.

opencc-zeroDec 2018View details →
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Data from: Seascape and life-history traits do not predict self-recruitment in a coral reef fish

The persistence and resilience of many coral reef species are dependent on rates of connectivity among sub-populations. However, despite increasing research efforts, the spatial scale of larval dispersal remains unpredictable for most marine metapopulations. Here, we assess patterns of larval dispersal in the angelfish Centropyge bicolor in Kimbe Bay, Papua New Guinea, using parentage and sibling reconstruction analyses based on 23 microsatellite DNA loci. We found that, contrary to previous findings in this system, self-recruitment (SR) was virtually absent at both the reef (0.4–0.5% at 0.15 km2) and the lagoon scale (0.6–0.8% at approx. 700 km2). While approximately 25% of the collected juveniles were identified as potential siblings, the majority of sibling pairs were sampled from separate reefs. Integrating our findings with earlier research from the same system suggests that geographical setting and life-history traits alone are not suitable predictors of SR and that high levels of localized recruitment are not universal in coral reef fishes.

opencc-zeroDec 2015View details →
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Data from: Biogeography of functional trait diversity in the Taiwanese reef fish fauna

The richness of Taiwanese reef fish species is inversely correlated to latitude as a direct consequence of the abiotic environment and its effects on benthic habitats. However, to date, no studies have investigated the variations in the diversity of traits (FD) linked with the role of these fishes in the ecosystem. FD is usually considered more sensitive than species richness in detecting early changes in response to disturbances, and therefore could serve as an indicator of ecological resilience to environmental changes. Here, we aim to characterize FD in the Taiwanese reef fish fauna and to document its regional variations. Six traits were used to categorize the 1,484 reef fish species occurring in four environmentally contrasted regions around Taiwan. The number of unique trait combinations (FEs), their richness (FRic), their redundancy (FR), their over-redundancy (FOR), and their vulnerability (FV) were compared among these regions. Overall, 416 FEs were identified. Their number decreased from south to north in step with regional species richness but FRic remained similar among regions. FR and FOR were higher to the south. At the local scale, variations in FEs and FRic are in concordance with the worldwide pattern of FD. High-latitude, impoverished fish assemblages, offer a range of trait combinations similar to diversified tropical assemblages. Increasing diversity in the latter mainly contributes to raising FR and supports already over-redundant entities. High vulnerability makes many combinations highly sensitive to species loss, and was higher at intermediate latitudes when using a fine resolution in trait categories. It suggests that the loss of FEs may first be characterized by an increase in their vulnerability, a pattern that could have been overlooked in previous global scale analyses. Overall, this study provides new insights into reef fish trait biogeography with potential ramifications for ecosystem functioning.

opencc-zeroDec 2018View details →
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Data from: Height and clonality traits determine plant community responses to fertilization

Fertilization via agricultural inputs and nutrient deposition is one of the major threats to global terrestrial plant richness, yet we still do not fully understand the mechanisms by which fertilization decreases plant richness. Tall clonal species have recently been proposed to cause declines in plant species richness by increasing in abundance in response to fertilization and competing strongly with other species. We tested this hypothesis in a fertilization experiment in a low productivity grassland by using a novel experimental manipulation of the presence vs. absence of clonal species and by examining the role of height within these treatments. We found that fertilization decreased species richness more in the presence than absence of clonal species. We also found that only tall species increased in biomass in response to fertilization. In the absence of clonal species, fertilization increased biomass of tall nonclonal species. However, in the presence of clonal species, fertilization decreased tall nonclonal biomass and only tall clonal biomass increased. Fertilization caused almost all short species to be lost in the presence, but not the absence, of clonal species and caused greater declines in the mean and variance of light levels in the presence of clonal species. These results show that the traits of species in a community can determine the magnitude of species loss due to fertilization. The strongly negative effect of tall clonals on species richness in fertilized plots is likely a result of their capacity to decrease light levels to a greater extent and more uniformly than nonclonal species, and thereby drive the exclusion of short species. These results help clarify the mechanisms whereby fertilization decreases grassland plant species richness and suggest that efforts to prevent the loss of species under fertilized conditions may be most effective when they focus on controlling the biomass of tall clonal species.

opencc-zeroDec 2013View details →
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Data from: The reciprocal relationship between competition and intraspecific trait variation

Trait differences among plants are expected to influence the outcome of competition; competition should be strongest between similar species (or individuals) under limiting similarity, and between dissimilar species within competitive hierarchies. These hypotheses are often used to infer competitive dynamics from trait patterns within communities. However, plant traits are frequently plastic in response to competition. This variation is poorly accounted for in trait-based studies of competition and community assembly. To explore the relationship between trait responses and competitive outcomes, we grew 15 species alone, in monoculture and in mixture. We measured traits relating to leaf and root tissue morphology as well as biomass allocation and related competition-induced changes in these traits to intra- and interspecific competition using multi-model inference. Additionally, we tested how traits from different competitive environments influenced potential community assembly inferences. The competitive environment had large effects on species' traits, although many effects were species specific. Differences among species in how competition affected trait expression were linked to both intra- and interspecific competition, frequently affecting competitive hierarchies. Intraspecific competition was lower for species that limited competition-induced increases in root allocation and had less variability in this trait overall. Interspecific competition was lower for species with larger leaves and lower specific leaf area than their neighbours. Switching to more stress-tolerant strategies by increasing root diameter and leaf tissue density also reduced competition. However, dissimilarity in root tissue density also minimized competition, consistent with limiting similarity affecting competitive outcomes. Moreover, changes in these traits were linked to changes in functional diversity, suggesting that competition affects functional diversity by affecting trait expression. Synthesis. Both trait hierarchies and trait dissimilarity affect the outcome of competition by acting on different traits, although competition-induced changes in trait expression can alter competitive outcomes. Moreover, the magnitude of these trait changes suggests that the source environment where plant traits are collected can affect the inferences drawn from trait patterns within communities. Combined, our results suggest that considering the effect of competition on trait expression is critical to understanding the relationship between traits and community assembly.

opencc-zeroDec 2015View details →
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Data from: Stoichiometric traits of stickleback: effects of genetic background, rearing environment, and ontogeny

Phenotypes can both evolve in response to, and affect, ecosystem change, but few examples of diverging ecosystem-effect traits have been investigated. Bony armor traits of fish are good candidates for this because they evolve rapidly in some freshwa- ter fish populations, and bone is phosphorus rich and likely to affect nutrient recycling in aquatic ecosystems. Here, we explore how ontogeny, rearing environment, and bone allocation among body parts affect the stoichiometric phenotype (i.e., stoichio- metric composition of bodies and excretion) of threespine stickleback. We use two populations from distinct freshwater lineages with contrasting lateral plating pheno- types (full vs. low plating) and their hybrids, which are mostly fully plated. We found that ontogeny, rearing environment, and body condition were the most important pre- dictors of organismal stoichiometry. Although elemental composition was similar be- tween both populations and their hybrids, we found significant divergence in phosphorus allocation among body parts and in phosphorus excretion rates. Overall, body armor differences did not explain variation in whole body phosphorus, phospho- rus allocation, or phosphorus excretion. Evolutionary divergence between these line- ages in both allocation and excretion is likely to have important direct consequences for ecosystems, but may be mediated by evolution of multiple morphological or physi- ological traits beyond plating phenotype.

opencc-zeroDec 2017View details →
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Data from: Incomplete datasets obscure associations between traits affecting dispersal ability and geographic range size of reef fishes in the Tropical Eastern Pacific

Dispersal is thought to be an important process determining range size, especially for species in highly spatially structured habitats, such as tropical reef fishes. Despite intensive research efforts, there is conflicting evidence about the role of dispersal on determining range size. We hypothesize that traits related to dispersal drive range sizes, but that complete and comprehensive datasets are essential for detecting relationships between species' dispersal ability and range size. We investigate the roles of six traits affecting several stages of dispersal (adult mobility, spawning mode, pelagic larval duration (PLD), body size, aggregation behaviour and circadian activity), in explaining range size variation of reef fishes in the Tropical Eastern Pacific (TEP). All traits, except for PLD (148 species), had data for all 497 species in the region. Using a series of models, we investigated which traits were associated with large range sizes, when analysing all TEP species or only species with PLD data. Furthermore, using null models, we analysed whether the PLD-subset is representative of the regional species pool. Several traits affecting dispersal ability were strongly associated with range size, although these relationships could not be detected when using the PLD-data subset. Pelagic spawners (allowing for passive egg dispersal) had on average 56% larger range sizes than non-pelagic spawners. Species with medium or high adult mobility had on average a 25% or 33% larger range, respectively, than species with low mobility. Null models showed that the PLD-subset was non-representative of the regional species pool, explaining why model outcomes using the PLD-subset differed from the ones based on the complete dataset. Our results show that in the TEP, traits affecting dispersal ability are important in explaining range size variation. Using a regionally complete dataset was crucial for detecting the theoretically expected, but so far empirically unresolved, relationship between dispersal and range size.

opencc-zeroDec 2018View details →
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Data from: Bird and bat species' global vulnerability to collision mortality at wind farms revealed through a trait-based assessment

Mitigation of anthropogenic climate change involves deployments of renewable energy worldwide, including wind farms, which can pose a significant collision risk to volant animals. Most studies into the collision risk between species and wind turbines, however, have taken place in industrialized countries. Potential effects for many locations and species therefore remain unclear. To redress this gap, we conducted a systematic literature review of recorded collisions between birds and bats and wind turbines within developed countries. We related collision rate to species-level traits and turbine characteristics to quantify the potential vulnerability of 9538 bird and 888 bat species globally. Avian collision rate was affected by migratory strategy, dispersal distance and habitat associations, and bat collision rates were influenced by dispersal distance. For birds and bats, larger turbine capacity (megawatts) increased collision rates; however, deploying a smaller number of large turbines with greater energy output reduced total collision risk per unit energy output, although bat mortality increased again with the largest turbines. Areas with high concentrations of vulnerable species were also identified, including migration corridors. Our results can therefore guide wind farm design and location to reduce the risk of large-scale animal mortality. This is the first quantitative global assessment of the relative collision vulnerability of species groups with wind turbines, providing valuable guidance for minimizing potentially serious negative impacts on biodiversity.

opencc-zeroDec 2016View details →
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Data from: Ants, fire and bark traits affect how African savanna trees recover following damage

Bark damage resulting from elephant feeding is common in African savanna trees with subsequent interactions with fire, insects and other pathogens often resulting in tree mortality. Yet, surprisingly little is known about how savanna trees respond to bark damage. We addressed this by investigating how the inner bark of marula (Sclerocarya birrea), a widespread tree species favoured by elephants, recovers after bark damage. We used a long-term fire experiment in the Kruger National Park to measure bark recovery with and without fire. At 24 months post-damage, mean wound closure was 98, 92, and 72% respectively in annual and biennial burns and fire exclusion treatments. Fire exclusion resulted in higher rates of ant colonisation of bark wounds, and such ant colonisation resulted in significantly lower bark recovery. We also investigated how ten common savanna tree species respond to bark damage and tested for relationships between bark damage, bark recovery and bark traits while accounting for phylogeny. We found phylogenetic signal in bark dry matter content, bark N and bark P, but not in bark thickness. Bark recovery and damage was highest in species which had thick moist inner bark and low wood densities (Anacardiaceae), intermediate in species which had moderate inner bark thickness and wood densities (Fabaceae) and lowest in species which had thin inner bark and high wood densities (Combretaceae). Elephants prefer species with thick, moist inner bark, traits that also appear to result in faster recovery rates.

opencc-zeroMay 2019View details →
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Data from: A phylogenetic comparative method for evaluating trait coevolution across two phylogenies for sets of interacting species

Evaluating trait correlations across species within a lineage via phylogenetic regression is fundamental to comparative evolutionary biology, but when traits of interest are derived from two sets of lineages that co-evolve with one another, methods for evaluating such patterns in a dual-phylogenetic context remain underdeveloped. Here we extend multivariate permutation-based phylogenetic regression to evaluate trait correlations in two sets of interacting species while accounting for their respective phylogenies. This extension is appropriate for both univariate and multivariate response data, and may utilize one or more independent variables, including environmental covariates. Imperfect correspondence between species in the interacting lineages can also be accommodated, such as when species in one lineage associate with multiple species in the other, or when there are unmatched taxa in one or both lineages. For both univariate and multivariate data, the method displays appropriate type I error, and statistical power increases with the strength of the trait covariation and the number of species in the phylogeny. These properties are retained even when there is not a 1:1 correspondence between lineages. Finally, we demonstrate the approach by evaluating the evolutionary correlation between traits in fig species and traits in their agaonid wasp pollinators. R computer code is provided.

opencc-zeroDec 2016View details →
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Data from: Reproductive traits as predictors of assembly chronosequence patterns in epiphyllous bryophyte metacommunities

1) Understanding the mechanisms underlying species assembly is a central focus of plant ecology and is crucial to revealing how plant communities are structured. However, the temporal limitations of most terrestrial plant communities preclude collection of species assembly data in a tractable time-frame. 2) The aim of this study is to investigate the importance of dispersal potential, as estimated by inter-specific variation in sexual and asexual expression, as a predictor of patch chronosequence assembly for epiphyllous (leaf-inhabiting) bryophytes. Secondarily, we investigate whether spatio-temporal patterns in patch turnover and compositional variation infer evidence of local (within-patch) population processes. The frequency and distribution of 55 epiphyllous bryophytes across five leaf age classes were studied on an understory shrub Piper grande (Piperaceae) in pre-montane Panamanian tropical forest. Logistical models were used to test whether inter-specific variation in dispersal-related life history traits predicts assembly order. Beta diversity and ordination analyses were employed to examine nestedness versus turnover, and probe for repeatable patterns in patch chronosequence assembly, respectively. 3) Our results emphasize the importance of dispersal potential on species assembly patterns as earlier arrivals exhibit greater probabilities of sexual and specialized asexual expression. High turnover coupled with temporal convergence in species composition also point to evidence of within-patch biotic filtering. 4) Synthesis: Epiphylls are locally diverse in humid tropical forests worldwide; however, the mechanisms which maintain their high local diversity are unknown. This study suggests that inter-specific variation in dispersal capacity in combination with diffuse indirect effects are the principal contributors to the high alpha-diversity of these ephemeral metacommunities.

opencc-zeroDec 2017View details →
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Data from: Are sexually selected traits affected by a poor environment early in life?

Background: Challenging conditions experienced early in life, such as a restricted diet, can detrimentally affect key life-history traits. Individuals can reduce these costs by delaying their sexual maturation, albeit at the price of the later onset of breeding, to eventually reach the same adult size as individuals that grow up in a benevolent environment. Delayed maturation can, however, still lead to other detrimental morphological and physiological changes that become apparent later in adulthood (e.g. shorter lifespan, faster senescence). In general, research focuses on the naturally selected costs of a poor early diet. In mosquitofish (Gambusia holbrooki), males with limited food intake early in life delay maturation to reach a similar adult body size to their well-fed counterparts ('catch-up growth'). Here we tested whether a poor early diet is costly due to the reduced expression of sexually selected male characters, namely genital size and ejaculate traits. Results: We found that a male's diet early in life significantly influenced his sperm reserves and sperm replenishment rate. Shortly after maturation males with a restricted early diet had significantly lower sperm reserves and slower replenishment rates than control diet males, but this dietary difference was no longer detectable in older males. Conclusions: Although delaying maturation to reach the same body size as well fed juveniles can ameliorate some costs of a poor start in life, our findings suggest that costs might still arise because of sexual selection against these males. It should be noted, however, that the observed effects are modest (Hedges' g = 0.20–0.36), and the assumption that lower sperm production translates into a decline in fitness under sperm competition remains unconfirmed.

opencc-zeroDec 2015View details →
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Data from: Quantitative trait loci for cold tolerance in chickpea

Fall-sown chickpea (Cicer arietinum L.) yields are often double those of spring-sown chickpea in regions with Mediterranean climates that have mild winters. However, winter kill can limit the productivity of fall-sown chickpea. Developing cold-tolerant chickpea would allow the expansion of the current geographic range where chickpea is grown and also improve productivity. The objective of this study was to identify the quantitative trait loci (QTL) associated with cold tolerance in chickpea. An interspecific recombinant inbred line population of 129 lines derived from a cross between ICC 4958, a cold-sensitive desi type (C. arietinum), and PI 489777, a cold-tolerant wild relative (C. reticulatum Ladiz), was used in this study. The population was phenotyped for cold tolerance in the field over four field seasons (September 2011–March 2015) and under controlled conditions two times. The population was genotyped using genotyping-by-sequencing, and an interspecific genetic linkage map consisting of 747 single nucleotide polymorphism (SNP) markers, spanning a distance of 393.7 cM, was developed. Three significant QTL were found on linkage groups (LGs) 1B, 3, and 8. The QTL on LGs 3 and 8 were consistently detected in six environments with logarithm of odds score ranges of 5.16 to 15.11 and 5.68 to 23.96, respectively. The QTL CT Ca-3.1 explained 7.15 to 34.6% of the phenotypic variance in all environments, whereas QTL CT Ca-8.1 explained 11.5 to 48.4%. The QTL-associated SNP markers may become useful for breeding with further fine mapping for increasing cold tolerance in domestic chickpea.

opencc-zeroDec 2018View details →
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Data from: Influence of the honeybee and trait similarity on the effect of a non-native plant on pollination and network rewiring

Introduced entomophilous non-native plants usually become well integrated into the diet of generalist pollinators. This integration can affect the entire recipient plant–pollinator network. Effects vary from facilitative to competitive, and understanding the factors that govern such variability is one of the fundamental goals in invasion ecology. Species traits determine the linking patterns between plant and pollinator species. Therefore, trait similarity among plants or among pollinators might modulate how they affect each other. We conducted a flower removal experiment to investigate the effects of the non-native entomophilous legume Hedysarum coronarium on the pollination patterns of a Mediterranean shrubland plant–pollinator network. Specifically, we explored whether effects were influenced by similarity with the resident plant species in flower morphology (papilionate vs. non-papilionate), and whether effects on the pollinator community were influenced by similarity in functional group with its main visitor species (bees vs. non-bees). In addition, we explored whether Hedysarum had an effect on the identity of interactions. For this purpose, we calculated the interaction rewiring, that is the number of plant–pollinator interactions that were gained or lost after invasion. Hedysarum was well integrated into the diet of 15 generalist pollinators having the honeybee as its main visitor species. Such integration did not affect visitation rates, normalized degree (i.e. proportion of pollinators they are visited by) nor niche overlap (i.e. proportion of plant species they share pollinators with) of plants, irrespective of their flower morphology. Only the proportion of honeybee visits to resident plants decreased with invasion. On the other hand, Hedysarum reduced visitation rates and niche overlap of pollinators, mainly those of bee species. Finally, we observed that changes in the foraging behaviour of the honeybee were positively associated with the interaction rewiring involving the rest (92 taxa) of pollinators. In conclusion, pollinators show a plastic use of floral resources, responding to the presence of non-native plants. When the non-native attracts highly competitive pollinators such as the honeybee, plasticity is especially significant in pollinators that are functionally close to that competitive pollinator. The result is an interaction rewiring, probably due to pollinators avoiding competition with the honeybee. Though this plasticity might not quantitatively affect the pollination of plants, consequences on their reproduction and the functioning of the network can derive from the interaction rewiring.

opencc-zeroDec 2015View details →
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Data from: Induced defences alter the strength and direction of natural selection on reproductive traits in common milkweed

Evolutionary biologists have long sought to understand the ecological processes that generate plant reproductive diversity. Recent evidence indicates that constitutive antiherbivore defences can alter natural selection on reproductive traits, but it is unclear whether induced defences will have the same effect and whether reduced foliar damage in defended plants is the cause of this pattern. In a factorial field experiment using common milkweed, Asclepias syriaca L., we induced plant defences using jasmonic acid (JA) and imposed foliar damage using scissors. We found that JA-induced plants experienced selection for more inflorescences that were smaller in size (fewer flowers), whereas control plants only experienced a trend towards selection for larger inflorescences (more flowers); all effects were independent of foliar damage. Our results demonstrate that induced defences can alter both the strength and direction of selection on reproductive traits, and suggest that antiherbivore defences may promote the evolution of plant reproductive diversity.

opencc-zeroDec 2016View details →
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Data from: Leaf trait variability between and within subalpine grassland species differs depending on site conditions and herbivory

Plant traits are commonly used to predict ecosystem-level processes, but the validity of such predictions is dependent on the assumption that trait variability between species is greater than trait variability within a speciesthe robustness assumption. Here, we compare leaf trait intraspecific and interspecific variability depending on: geographical differences between sites, and five years of experimental herbivore exclusion in two vegetation types of subalpine grasslands in Switzerland. Four-leaf traits were measured from eight herbaceous species common to all 18 sites. Intraspecific trait variability differed significantly depending on site and herbivory. However, the amount and structure of variability depended on the trait measured and whether considering leaf traits separately or multiple leaf traits simultaneously. Leaf phosphorus (P) concentration showed the highest intraspecific variability, while specific leaf area (SLA) showed the highest interspecific variability and displayed intraspecific variability only in response to herbivore exclusion. Species identity based on multiple traits was not predictable. We find intraspecific variability is an essential consideration when using plant functional traits as a common currency not just species mean traits. This is particularly true for leaf nutrient concentrations, which showed high intraspecific variability in response to site differences and herbivore exclusion; a finding which suggests that the robustness assumption does not always hold.

opencc-zeroJul 2019View details →
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Data from: Genome wide association mapping of floral traits in cultivated sunflower (Helianthus annuus)

Floral morphology and pigmentation are both charismatic and economically relevant traits associated with cultivated sunflower (Helianthus annuus L.). Recent work has linked floral morphology and pigmentation to pollinator efficiency and seed yield. Understanding the genetic architecture of such traits is essential for crop improvement, and gives insight into the role of genetic constraints in shaping floral diversity. A diversity panel of 288 sunflower genotypes was phenotyped for a variety of morphological, phenological, and color traits in both a greenhouse and a field setting. Association mapping was performed using 5788 SNP markers using a mixed linear model approach. Several dozen markers across ten linkage groups were significantly associated with variation in morphological and color trait variation. Substantial trait plasticity was observed between greenhouse and field phenotyping, and associations differed between environments. Color traits mapped more strongly than morphology in both settings, with markers together explaining 16% of petal carotenoid content in the greenhouse, and 17% and 24% of variation in disc anthocyanin presence in the field and greenhouse, respectively. Morphological traits like disc size mapped more strongly in the field, with markers together explaining up to 19% of disc size variation. Loci identified here through association mapping within cultivated germplasm differ from those identified through biparental crosses between modern cultivated sunflower and either its wild progenitor or domesticated landraces. Several loci lie within genomic regions involved in domestication. Differences between phenotype expression under greenhouse and field conditions highlight the importance of plasticity in determining floral morphology and pigmentation.

opencc-zeroDec 2018View details →
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Data from: Genetic parameters in subtropical pine F1 hybrids: heritabilities, between-trait correlations and genotype-by-environment interactions

Growth and stem straightness traits of 29 Pinus caribaea var. hondurensis × Pinus tecunumanii (PCH × PTEC) and 26 P. caribaea var. hondurensis × Pinus oocarpa (PCH × POOC) hybrid pair-crosses plus a total of 16 intraspecific families were assessed at ages 5, 8 and 15 years from planting at two sites. The PCH × PTEC hybrid was the most productive, yielding 37 % more than a Pinus elliottii local control and was 21 % superior to either parental species in DBH growth. PCH × POOC hybrid was, on average, 16 % superior to either parental species for DBH. Narrow-sense heritability estimates were low to moderate for growth traits (average of 0.27) and stem straightness (0.16). The estimated additive genetic correlations between growth traits and ages within traits were high (>0.8) and positive, providing confidence in early selection based on diameter at breast height. The high proportion of estimated additive genetic variance compared to dominance variance in the F1 pine hybrids suggests that breeding strategies that maximize the use of additive genetic variance may be effective. The ranking of the 11 PCH parents based on general hybridizing ability predictions (estimated breeding values as hybrids) was somewhat inconsistent between PTEC and POOC hybrid crosses for all traits (r 9 d.f. = 0.38–0.45; p ∼0.15–0.25). There was no evidence of practically important G × E interaction for the hybrids except for PCH × PTEC height growth. This study suggests that a single, multi-hybrid breeding population seems appropriate in Zimbabwe if the trial sites are representative of the planting target zone.

opencc-zeroDec 2014View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.