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Figure 2 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 2 - Average changes in color over time (days since the start of each treatment) for adult azure sand grasshoppers kept on bluish-gray stones (blue symbols and lines) or reddish-brown soil (red symbols and lines). Color is expressed in the three independent dimensions of the CIE-L*a*b* space (see text). Lines show the predicted values for each CIE-L*a*b dimension according to a fitted model containing Time, Substrate, Sex, Time:Substrate and sqTime; we excluded the subject random effect for better visualization. Continuous lines and circles are for females while dashed lines and triangles are for males. The "Red Earth" treatment had to be restarted using grasshoppers from the same field location but captured later in time. As a result, the timing of data collection is out of phase between treatments, and L is initially slightly lower for "Red Earth" individuals (since the species gets darker with age).
Figure 1 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 1 - Example of an image taken for color measurement. The individual was held in place by the transparent plastic lid of the Petri dish to obtain a correct position. Brightness and hue were measured in the red diamond-shaped part of the thorax. The color of a small area of the background paper was also measured (red circle) as a reference gray standard to correct for lighting variation among images.
Figure 4 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 4 - Change in color over time for two example individuals. From left to right: at the start of the experiment, 7 weeks later, and after freezing and cleaning at the end of the experiment. Individual a. was kept on blue-gray substrate and individual b. was kept on reddish-brown substrate. For visualization, the bars under the images show the average dorsal color as captured by the CIE-L*a*b* values measured for each individual at each point in time.
Figure 2 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 2 - Average changes in color over time (days since the start of each treatment) for adult azure sand grasshoppers kept on bluish-gray stones (blue symbols and lines) or reddish-brown soil (red symbols and lines). Color is expressed in the three independent dimensions of the CIE-L*a*b* space (see text). Lines show the predicted values for each CIE-L*a*b dimension according to a fitted model containing Time, Substrate, Sex, Time:Substrate and sqTime; we excluded the subject random effect for better visualization. Continuous lines and circles are for females while dashed lines and triangles are for males. The "Red Earth" treatment had to be restarted using grasshoppers from the same field location but captured later in time. As a result, the timing of data collection is out of phase between treatments, and L is initially slightly lower for "Red Earth" individuals (since the species gets darker with age).
Figure 4 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 4 - Change in color over time for two example individuals. From left to right: at the start of the experiment, 7 weeks later, and after freezing and cleaning at the end of the experiment. Individual a. was kept on blue-gray substrate and individual b. was kept on reddish-brown substrate. For visualization, the bars under the images show the average dorsal color as captured by the CIE-L*a*b* values measured for each individual at each point in time.
Figure 3 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 3 - Individual changes in color in the final surviving azure sand grasshoppers when kept on bluish-gray stones (blue lines, N = 2) or reddish-brown soil (red lines, N = 3). The comparison is between the same individuals at the beginning of the experiment and once frozen and cleaned at the end. Color is expressed in the three independent dimensions of the CIE-L*a*b* space (see text).
Figure 1 from: Peralta-Rincon JR, Escudero G, Edelaar P (2017) Phenotypic plasticity in color without molt in adult grasshoppers of the genus Sphingonotus (Acrididae: Oedipodinae). Journal of Orthoptera Research 26: 21-27. https://doi.org/10.3897/jor.26.14550
Figure 1 - Example of an image taken for color measurement. The individual was held in place by the transparent plastic lid of the Petri dish to obtain a correct position. Brightness and hue were measured in the red diamond-shaped part of the thorax. The color of a small area of the background paper was also measured (red circle) as a reference gray standard to correct for lighting variation among images.
Supporting Data:A pleiotropic 'stretch' phenotype is associated with metaxylem vessel element length, axial hydraulic conductance, root elongation, water utilization, and drought adaptation in maize.
<p>These data were collected to assess how xylem perforation plates affect water use strategies in maize (<em>Zea mays </em>L.) under water deficit through empirical studies in controlled environments and in the field. In this work, our goals were to explore the extent of intraspecific variation for the structure of perforation plates within an annual monocot and assess how this variation affects transport and use of water under drought stress. Specifically, we test the hypotheses that (1) simple perforation plates have a significant effect on water transport, (2) intraspecific variation exists for these features in maize, and (3) this variation affects water use strategies under drought stress. </p>
High-throughput phenotyping of drought response in Phaseolinae
<p><span>Using a high-throughput phenotypic imaging system, we evaluated the drought tolerance of 151 bean accessions (Phaseolinae; Fabaceae) by quantifying five different traits simultaneously: biomass, water use efficiency, relative water content, chlorophyll content, and root/shoot ratio. </span>The base data for calculating the drought response indicators and the accessions used in the study are listed in these datasets</p>
Rapid Inference of Antibiotic Susceptibility Phenotype of Uropathogens using Metagenomic Sequencing with Neighbour Typing - Klebsiella spp. Isolates for RASE Databases and Paired Isolates
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Rapid Inference of Antibiotic Susceptibility Phenotype of Uropathogens using Metagenomic Sequencing with Neighbour Typing - E. coli Isolates for RASE Databases and Paired Isolates
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High Temporal Resolution UAS Phenotyping Provides Unique Information Between Flight Dates
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Fig 4 in A new species of Macrocypraea (Gastropoda, Cypraeidae) from Trindade Island, Brazil, including phenotypic differentiation from remaining congeneric species
Fig 4. Macrocypraea spp radulae in SEM. (A) M. mammoth paratype MZSP 137546; (B-C) M. mammoth holotype. (D) M. cervus ANSP 93276. (E) Same, detail. scales = 32–35: 1 mm, 36: 0.5 mm. (F-K) M. mammoth MZSP 137545, 3D reconstructions of shell (CT-Scan) (L 100.0 mm). |(F) Frontal view. (G) Same, more ventral portions removed. (H) Anterior view. (I) Posterior view. (J) Right view, right half removed. (K) Same, section along columellar axis. https://doi.org/10.1371/journal.pone.0225963.g004
Figure 4 in Phenotypic and molecular characterization of fluoroquinolone resistant Pseudomonas aeruginosa isolates in Palestine
Figure 4. Amino acid variation positions of GyrA (A),ParC (B) and ParE (C) genes among the studied fluoroquinolone resistant P.aeruginosa isolates according to the references from GenBank.
Fig. 3 in The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae
Fig. 3 Chronogram for Entorrhizales evolution. The tree topology represents the consensus of trees inferred with BEAST from ITS + LSU sequences from 26 specimens of the Entorrhizales with Talbotiomyces calosporus (Talbotiomycetales) as outgroup. Alignment length = 1570 bp. The age estimation mean is followed by the 95% highest density
◂Fig. 3 Historically described phenotypical variations and yet undiscovered deviations in the plate pattern of P. volzii. b–c, f, i, l–m Light microscopy, a, d–e, g–h, k scanning electron microscopy. a–f Newly identified deviations a–b plate 4′′ pentagonal in strains a GeoM*793; b GeoM*788; c plate 2a split (strain GeoK*024); d plates 2′′ and 3′′ fused (strain GeoM*866); e plates 1′′′ and 1′′′′ fused (strain GeoM*788); f plates 1a and 3′ fused (strain GeoM*788). g–m Historic infraspecific taxa; g P. guestrowiense forma lineatum (strain GeoM*866); h P. guestrowiense forma compressum (strain GeoM*866); i P. guestrowiense subvar. originale (strain GeoK*024); k P. volzii var. cinctiforme (strain GeoM*793); l P. volzii var. simplex (strain GeoM*789); m P. volzii forma complexum (strain GeoM*793). Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, split or fused plates are indicated by asterisks. Scale bar= 10 µm. U A= 15 kV in Morphological and molecular variability of Peridinium volzii Lemmerm. (Peridiniaceae, Dinophyceae) and its relevance for infraspecific taxonomy
◂Fig. 3 Historically described phenotypical variations and yet undiscovered deviations in the plate pattern of P. volzii. b–c, f, i, l–m Light microscopy, a, d–e, g–h, k scanning electron microscopy. a–f Newly identified deviations a–b plate 4′′ pentagonal in strains a GeoM*793; b GeoM*788; c plate 2a split (strain GeoK*024); d plates 2′′ and 3′′ fused (strain GeoM*866); e plates 1′′′ and 1′′′′ fused (strain GeoM*788); f plates 1a and 3′ fused (strain GeoM*788). g–m Historic infraspecific taxa; g P. guestrowiense forma lineatum (strain GeoM*866); h P. guestrowiense forma compressum (strain GeoM*866); i P. guestrowiense subvar. originale (strain GeoK*024); k P. volzii var. cinctiforme (strain GeoM*793); l P. volzii var. simplex (strain GeoM*789); m P. volzii forma complexum (strain GeoM*793). Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, split or fused plates are indicated by asterisks. Scale bar= 10 µm. U A= 15 kV
Figure 3 from: Rocha-Méndez A, Sánchez-González LA, Arbeláez-Cortés E, Navarro-Sigüenza AG (2018) Phylogeography indicates incomplete genetic divergence among phenotypically differentiated montane forest populations of Atlapetes albinucha (Aves, Passerellidae). ZooKeys 809: 125-148. https://doi.org/10.3897/zookeys.809.28743
Figure 3 Bayesian skyline plot derived from the concatenated gene dataset of Atlapetesalbinucha species. Time in millions of years. Population size change (Ne*generation time) in the Y axis. Mean estimate is shown as a thick solid line, and the 95% HDP limits are shown in solid purple color area surrounding the mean estimate.
Figure 4 from: Rocha-Méndez A, Sánchez-González LA, Arbeláez-Cortés E, Navarro-Sigüenza AG (2018) Phylogeography indicates incomplete genetic divergence among phenotypically differentiated montane forest populations of Atlapetes albinucha (Aves, Passerellidae). ZooKeys 809: 125-148. https://doi.org/10.3897/zookeys.809.28743
Figure 4 Maxent ENMs for A.albinucha species projected into present and past scenarios. Darker blue areas depict higher logistic prediction values. ENM projected in the a present b the Mid-Holocene Climatic Optimum (MH) c the Last Glacial Maximum (LGM) and d the Last Interglacial (LIG).
Figure 1 from: Rocha-Méndez A, Sánchez-González LA, Arbeláez-Cortés E, Navarro-Sigüenza AG (2018) Phylogeography indicates incomplete genetic divergence among phenotypically differentiated montane forest populations of Atlapetes albinucha (Aves, Passerellidae). ZooKeys 809: 125-148. https://doi.org/10.3897/zookeys.809.28743
Figure 1 Atlapetesalbinucha distribution shown in green stapled lines, based on Sánchez-González et al. (2015) and Natureserve (http://natureserve.org). Blue dots depict tissue samples used in the present study. Red dots depict records of the species used to construct the distribution model. Bird pictures depict the geographic regions where color morphs are found. Blue line depicts the location of the putative distribution barrier of the morphs in Chiapas.
Figure 2 from: Rocha-Méndez A, Sánchez-González LA, Arbeláez-Cortés E, Navarro-Sigüenza AG (2018) Phylogeography indicates incomplete genetic divergence among phenotypically differentiated montane forest populations of Atlapetes albinucha (Aves, Passerellidae). ZooKeys 809: 125-148. https://doi.org/10.3897/zookeys.809.28743
Figure 2 A Dated Bayesian maximum clade credibility tree showing phylogenetic relationships among members of Atlapetesalbinucha species. Node bars depict 95% HDP interval, scale bar represents millions of years. Nodal values above branches indicate posterior probabilities/ bootstrap supports of BI/ML. Capital letters depict haplotypes. An asterisk (*) indicate birds representing yellow morphs B Median-joining haplotype network for the concatenated dataset. Each color depicts the geographic provenance of samples: green-northern Chiapas (subspecies albinucha), red-southern Chiapas (subspeciesgriseipectus), blue-El Salvador (subspecies griseipectus), yellow-Honduras (subspecies fuscipygius) and light blue-Colombia (subspecies gutturalis). Each branch represents a single nucleotide change, transversal black lines along branches depict the occurrence of three mutations. Gray dots indicate median vectors inferred for the data.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.