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Figure 10 in Review of leaf beetles of the family Megalopodidae (Coleoptera: Chrysomeloidea) from Siberia and the Russian Far East
Figure 10. Distribution of Zeugophora cupka.
Figure 13 in Review of leaf beetles of the family Megalopodidae (Coleoptera: Chrysomeloidea) from Siberia and the Russian Far East
Figure 13. Distribution of Zeugophora nigricollis in Russia.
Figure 9 in Review of leaf beetles of the family Megalopodidae (Coleoptera: Chrysomeloidea) from Siberia and the Russian Far East
Figure 9. Distribution of Zeugophora bimaculata in Russia.
Figure 6 in Review of leaf beetles of the family Megalopodidae (Coleoptera: Chrysomeloidea) from Siberia and the Russian Far East
Figure 6. Distribution of Temnaspis nankinea in Russia.
Figure 5 in Review of leaf beetles of the family Megalopodidae (Coleoptera: Chrysomeloidea) from Siberia and the Russian Far East
Figure 5. Distribution of Temnaspis japonica in Russia.
Figure 17 in Review of leaf beetles of the family Megalopodidae (Coleoptera: Chrysomeloidea) from Siberia and the Russian Far East
Figure 17. Distribution of Zeugopora turneri in Nortern Asia.
Figure 13 in A new water mite species of the genus Hygrobates Koch, 1837 (Acari, Hydrachnidia, Hygrobatidae) from Far East of Russia
Figure 13. Hygrobates (Rivobates) ezoensis: 13 – pedipalp (after Matsumoto et al. 2005).
Fig. 1 in Genetic diversity of Halyomorpha halys (Hemiptera, Pentatomidae) in Korea and comparison with COI sequence datasets from East Asia, Europe, and North America
Fig. 1. Halyomorpha halys collection sites in Korea and the USA.
Fig. 3 in Frasnian-Famennian extinction and recovery of rhynchonellid brachiopods from the East European Platform
Fig. 3. Location of the regions and sections studied.
Replication data for: "Revisiting the 'East African Paradox': CMIP6 models also struggle to reproduce strong observed Long Rain drying trends."
<h3><strong>Intro</strong></h3> <p>This repository contains replication data for Schwarzwald, Kevin and Richard Seager (2024), "'Revisiting the “East African Paradox': CMIP6 models also struggle to reproduce strong observed MAM long rain drying trends." (under revision at Journal of Climate). This includes the data necessary to replicate all main text figures and most figures in Supplementary Materials. Additional figures in Supplementary Materials require raw precipitation time series, detailed below. This repository also includes a copy of the code necessary to replicate the entire study; the latest version of the code, in addition to instructions on how to use it, is kept at <a href="https://github.com/ks905383/gha_trends">this GitHub archive</a>. </p> <h3><strong>Structure</strong></h3> <p>The repository is structured as follows: </p> <ul> <li><code>code</code>: Static / stable version of reproduction code for Schwarzwald and Seager (2024) that uses and creates these data (see <a href="https://github.com/ks905383/gha_trends">here</a> for more detailed instructions)</li> <li><code>figures</code>: Static / stable versions of main and supplemental figures for Schwarzwald and Seager (2024).</li> <li><code>climate_raw</code>: "raw" (often pre-processed) climate data files; only some files are included, see below for more details</li> <li><code>climate_proc</code>: Processed climate data files upon which the analysis is based, used by main and supplemental figure code</li> <li><code>aux_data</code>: Certain auxiliary data files (fonts, critical values) and intermediate files for long code processes. Created and used by the replication code. </li> </ul> <h3><strong>Notes on raw climate data</strong></h3> <p>Due to space limitations (and a desire to not create yet another cloud copy of CMIP6 data), this repository only contains processed CMIP6 data: the calculated linear trends of rainfall, sea surface temperatures, and 500 hPa geopotential height used in the analysis of Schwarzwald and Seager (2024). The raw data used to create these files can be downloaded from the <a href="https://aims2.llnl.gov/search/cmip6/">ESGF</a>, and consists of every available CMIP6 monthly rainfall, sea surface temperature (SST), and geopotential height file on the archive at the time of processing for the experiments detailed in the manuscript. For precipitation, only a bounding box (-3 S to 12.5 N, 32 E to 55 E) around East Africa was downloaded, and saved with the file suffix "_HoAfrica" (see replication code README for more details). One example precipitation file (one ensemble member of ACCESS-CM2 historical precipitation) is included in this repository for reference. </p> <p>Similarly, this repository only contains processed NMME data: calculated linear trends of rainfall used in the analysis of Schwarzwald and Seager (2024). The raw data used to create these files can be downloaded from the <a href="https://iridl.ldeo.columbia.edu/SOURCES/.Models/.NMME/">IRI Data Library</a> and consists of every available monthly rainfall hindcast / forecast file from the NMME archive for the models used (see manuscript Table S1). As above, only a bounding box around East Africa was downloaded, and files were standardized to a partial CMIP* file format (one file per variable, with CMIP file and variable name conventions, but with forecast lead time as an additional dimension). Preprocessing is a bit more extensive than for CMIP6 models: first, hindcasts and forecasts were concatenated into a single file (since hindcasts are saved in the archive only up to the time when the model was operationalized), and then reindexed such that the "time" variable refers to the time <em>for which the forecast is made</em>, and not the time <em>at</em> which the forecast is made. One example precipitation file (CanCM4i rainfall hindcasts/forecasts) is included in this repository for reference. </p> <p>This repository does, however, contain preprocessed copies of the "raw" gridded observational rainfall data products used (in addition to the processed trends), since harmonizing and standardizing the data into a format easily compatible with the CMIP6 data was a nontrivial amount of work that would be tedious to replicate. For the ten gridded observational data products used, monthly rainfall was brought into the CMIP* file format (one file per variable, with CMIP file and variable name conventions), with one notable exception: all observational rainfall is saved in units of mm/day. </p> <p>Reanalysis and gridded ocean observations can be downloaded from each product's respective repositories. As before, the code assumes the data have been preprocessed into something akin to the CMIP* file format. </p> <h3><strong>Notes on processed climate data</strong></h3> <p>Note that the repository includes a file (<code>aux_data/pr_doyavg_CHIRPS_historical_seasstats_dunning_19810101-20141231_HoAfrica.nc</code>) containing CHIRPS seasonal characteristics in East Africa, created as part of Schwarzwald et al., 2023, <em>Climate Dynamics</em>. This file is primarily used to set the boundaries of the study region, see the manuscript for details of how it was calculated. </p> <h3><strong>Licensing, citing, questions</strong></h3> <p>These data are offered under a CC 4.0 license, which allows redistribution and reuse as long as they are correctly cited; note that for much of these data (especially for "raw" data), this requires citations to the original creators. </p> <p>For questions, please feel free to reach out to corresponding author Kevin Schwarzwald. </p>
Figure 6 in Subterranean fauna from Siberia and Russian Far East
Figure 6. MSS on the eastern slope of the Sikhote-Alin Mountain ridge, Primory, Far East.
Fig. 4 in Campanian (Late Cretaceous) nautiloids from Sakhalin, Far East Russia
Fig. 4. Criteria for systematic classification of nautiloids used herein.
Fig. 2 in Faunal and facies changes at the Early-Middle Frasnian boundary in the north-western East European Platform
Fig. 2. Local stratigraphical chart of the north−central part of the Main Devonian Field.
Appendix 2 in Preliminary assessment of community composition and phylogeographic relationships of the birds of the Meratus Mountains, south-east Borneo, Indonesia
<p><b>Appendix 2: List of ND2 sequence-samples compared for this study, classified according to Clements</b> <i>et al</i>. <b>(2017).</b></p><table><thead><tr><th>Tissue No.*</th><th>Genus</th><th>Species</th><th>Locality</th><th>GenBank No</th></tr></thead><tbody><tr><th>LSUMNS B-51117 / AMNH DOT 15123</th><td>Cacomantis</td><td><i>sonneratii</i></td><td>Tawau Hills Park, Sabah</td><td>KJ455342</td></tr><tr><th>LSUMNS B-79648</th><td>Cacomantis</td><td><i>sonneratii</i></td><td>Kuching, Sarawak</td><td>MG546353</td></tr><tr><th>LSUMNS B-47009</th><td>Cacomantis</td><td><i>merulinus</i></td><td>Mt. Kinabalu, Sabah</td><td>MG546349</td></tr><tr><th>LSUMNS B-47049</th><td>Cacomantis</td><td><i>merulinus</i></td><td>Mt. Kinabalu, Sabah</td><td>MG546350</td></tr><tr><th>LSUMNS B-58630</th><td>Cacomantis</td><td><i>merulinus</i></td><td>Mt. Pueh, Sarawak</td><td>MG546351</td></tr><tr><th>LSUMNS B-79020</th><td>Cacomantis</td><td><i>merulinus</i></td><td>Meratus Mountains, South Kalimantan</td><td>MG546352</td></tr><tr><th>UWBM 67474</th><td>Cacomantis</td><td><i>merulinus</i></td><td>Sumatra, Indonesia</td><td>KJ455341</td></tr><tr><th>LSUMNS B-51190</th><td>Psilopogon</td><td><i>eximius</i></td><td>Tawau Hills Park, Sabah</td><td>MG 546418</td></tr><tr><th>LSUMNS B-79082</th><td>Psilopogon</td><td><i>eximius</i></td><td>Meratus Mountains, South Kalimantan</td><td>MG546419</td></tr></tbody></table>
Appendix 1 in Preliminary assessment of community composition and phylogeographic relationships of the birds of the Meratus Mountains, south-east Borneo, Indonesia
<p><b>Appendix 1: List of bird species recorded in the Meratus Mountains</b></p><table><thead><tr><th><b>Scientific name</b> a</th><th><b>English name</b> a</th><th>Elevation, this studyb 500 m 1,150 m 1,350 m</th><th colspan="2"><b>Davison</b> Eaton <i>et</i> <i>al.</i> (1997) c (2017)</th></tr></thead><tbody><tr><th><i>Rollulus rouloul</i></th><td>Crested Partridge</td><td></td><td></td><td>x</td></tr><tr><th><i>Spilornis cheela</i></th><td>Crested Serpent Eagle</td><td>x</td><td>x</td><td>x</td></tr><tr><th><i>Nisaetus alboniger</i></th><td>Blyth’s Hawk-Eagle</td><td></td><td></td><td>x</td></tr><tr><th><i>Lophotriorchis kienerii</i></th><td>Rufous-bellied Eagle</td><td></td><td></td><td>x</td></tr><tr><th><i>Macropygia ruficeps</i></th><td>Little Cuckoo-Dove</td><td>x</td><td>x</td><td>x</td></tr><tr><th><i>Chalcophaps indica</i></th><td>Asian Emerald Dove</td><td>x</td><td>x</td><td></td></tr><tr><th><i>Treron olax **</i></th><td>Little Green Pigeon</td><td>x</td><td></td><td></td></tr><tr><th><i>Ducula badia</i></th><td>Mountain Imperial Pigeon</td><td></td><td>x</td><td></td></tr><tr><th><i>Centropus sinensis</i></th><td>Greater Coucal</td><td>x</td><td>x</td><td></td></tr><tr><th><i>Centropus bengalensis</i></th><td>Lesser Coucal</td><td></td><td>x</td><td></td></tr><tr><th><i>Phaenicophaeus curvirostris</i></th><td>Chestnut-breasted Malkoha</td><td>s</td><td></td><td></td></tr><tr><th><i>Cacomantis merulinus*</i></th><td>Plaintive Cuckoo</td><td>s</td><td>x</td><td></td></tr><tr><th><i>Cacomantis variolosus</i></th><td>Brush Cuckoo</td><td></td><td></td><td>x</td></tr></tbody></table>
TABLE 1 in Preliminary assessment of community composition and phylogeographic relationships of the birds of the Meratus Mountains, south-east Borneo, Indonesia
<p>TABLE 1 Plumage colour variation in Ochraceous Bulbul <i>Alophoixus ochraceus</i> and Grey-cheeked Bulbul <i>A. bres</i> from the Meratus Mountains and other parts of Borneo.</p><table><thead><tr><th>Plumage tract</th><th><i>A. ochraceus</i> (Meratus)</th><th><i>A. ochraceus ruficrissus</i> / fowleri (Sabah and Sarawak)</th><th><i>Alophoixus bres</i> (Sabah and Sarawak)</th></tr></thead><tbody><tr><th>Crown and nape</th><td>Grey</td><td>Greyish brown</td><td>Rufous-brown</td></tr><tr><th>Back and rump</th><td>Olive-green</td><td>Olive-brown</td><td>Olive-green</td></tr><tr><th>Tail</th><td>Dark reddish brown</td><td>Dark reddish brown</td><td>Dark reddish brown</td></tr><tr><th>Wings</th><td>Brown with green edges</td><td>Dark reddish brown</td><td>Dark reddish brown</td></tr><tr><th>Throat</th><td>White</td><td>White</td><td>White</td></tr><tr><th>Breast and flanks</th><td>Bright olive-green</td><td>Greyish brown</td><td>Pinkish brown</td></tr><tr><th>Belly</th><td>Lemon-yellow</td><td>Pale yellowish brown</td><td>Pale yellow</td></tr><tr><th>Vent</th><td>Yellowish brown</td><td>Rufous</td><td>Yellowish brown</td></tr></tbody></table>
TABLE 2 in Preliminary assessment of community composition and phylogeographic relationships of the birds of the Meratus Mountains, south-east Borneo, Indonesia
<p>TABLE 2 Size comparison between six specimens of Meratus and five specimens of Sabah and Sarawak populations of Hill Blue Flycatcher <i>Cyornis banyumas</i>, including males and females. T-test values show significance of differences between the two groups. All measurements in mm.</p><table><thead><tr><th>Population</th><th>Culmen length</th><th>Culmen width</th><th>Culmen depth</th><th>Tail</th><th>Tarsus</th><th>Wing</th></tr></thead><tbody><tr><th>Meratus (mean)</th><td>10.63</td><td>5.87</td><td>4.53</td><td>64.78</td><td>20.48</td><td>78.83</td></tr><tr><th>Meratus (s.d.)</th><td>0.37</td><td>0.25</td><td>0.35</td><td>2.86</td><td>1.24</td><td>2.19</td></tr><tr><th>Sabah and Sarawak (mean)</th><td>9.68</td><td>5.48</td><td>3.86</td><td>61.20</td><td>17.98</td><td>72.80</td></tr><tr><th>Sabah and Sarawak (s.d.)</th><td>0.22</td><td>0.31</td><td>0.14</td><td>1.43</td><td>1.32</td><td>1.60</td></tr><tr><th>T-test <i>P</i> value</th><td>0.001</td><td>0.038</td><td>0.003</td><td>0.024</td><td>0.009</td><td>0.001</td></tr></tbody></table>
East-West ocean surface velocity component
Open the record for dataset details and reuse information.
Fig 10 in Culture and breeding of Ompok bimaculatus, Pabda (Indian Butter catfish), seed production in North-East, India
Fig 10: Tubifex (live feed)
Fig 12 in Culture and breeding of Ompok bimaculatus, Pabda (Indian Butter catfish), seed production in North-East, India
Fig 12: Feeding to broodstock
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.