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4,144 results for “ITS barcode”
DNA barcode analyses improve accuracy in fungal species distribution models
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Data for morphometric analysis and DNA barcode sequence for the new fish species Polymixia hollisterae
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Figure 7 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 7 Bayesian inference tree of mitochondrial genes of the specimens analysed for the present study. ACOIB 16S. The numbers on the nodes indicate Neighbour Joining (bootstrap %) / Maximum Likelihood (bootstrap %) / Bayesian posterior probability. Hyphen (-) indicates nodes not supported in some trees. Sequences from Colombia obtained in this study include the catalogue number at the MHNMC - INVEMAR (INV EQU); GenBank ascension number is included for the other sequences (see Table 1).
Figure 6 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 6 Ossicles of the juvenile paratype of Holothuria (Mertensiothuria) viridiaurantia sp. nov. (INV EQU4312, L = 25 mm). A Dorsal body wall (tables, buttons) B ventral body wall (tables, buttons) C dorsal papillae (tables, buttons, rods) D tube feet (tables, buttons, supporting plates) E tube feet (end plate) F tentacles (large and thick rods, small rods). Scale bars: 100 µm.
Figure 5 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 5 Ossicles comparison between Holothuria (Mertensiothuria) viridiaurantia sp. nov. and Holothuria (Mertensiothuria) hilla. A Holotype of H. (M.) viridiaurantia sp. nov. (INV EQU4309, L = 70 mm) BH. (M.) hilla (INV EQU4311, L = 65 mm); showing end plates from tube feet and ossicle set from tentacles (large and small rods) and longitudinal muscles (C's and O's ossicles). Scale bars: 100 µm (except A upper).
Figure 4 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 4 Ossicles comparison between Holothuria (Mertensiothuria) viridiaurantia sp. nov. and Holothuria (Mertensiothuria) hilla. A Holotype of H. (M.) viridiaurantia sp. nov.(INV EQU4309, L = 70 mm BH. (M.) hilla (INV EQU4311, L = 65 mm); showing ossicle set from dorsal papillae (tables, buttons, rods), dorsal papillae tip (showing the plate and small rods at the tip) and tube feet (tables, buttons and supporting plates); grey squares indicated in some images are presented enlarged below each image. Scale bar: 100 µm.
Figure 3 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 3 Ossicle comparison between Holothuria (Mertensiothuria) viridiaurantia sp. nov. and Holothuria (Mertensiothuria) hilla. A Holotype of H. (M.) viridiaurantia sp. nov. (INV EQU4309, L = 70 mm) BH. (M.) hilla (INV EQU4311, L = 65 mm); showing ossicle set from dorsal body wall (tables, buttons) and ventral body wall (tables, buttons); grey squares indicated in the images are presented enlarged below each image. Scale bar: 100 µm.
Figure 2 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 2 Type specimens of Holothuria (Mertensiothuria) viridiaurantia sp. nov. (A–F) and comparative material of Holothuria (Mertensiothuria) hilla (G–J). A Dorsal and ventral view of the alive holotype of H. (M.) viridiaurantia sp. nov. from Gulf of Cupica, Northern Chocó, Colombia (INV EQU4309, L = 70 mm) B calcareous ring and C stone canal and madreporite of the Holotype D detail of the preserved holotype tentacles E paratype from Cabo Marzo; Northern Chocó, Colombia (INV EQU4234, L = 35 mm) F smallest paratype from Gulf of Tribugá, Northern Chocó, Colombia (INV EQU4312, L = 25 mm) G, H alive specimen of H. (M.) hilla from Cabo Marzo, Northern Chocó, Colombia, and detail of tentacles in the preserved specimen (INV EQU4310, L = 100 mm) I, J preserved specimen of H. (M.) hilla, same locality as G, H and detail of tentacles (INV EQU4311, L = 65 mm). Scale bars: 2 mm (B, C); 1 cm (E, F, I).
Figure 1 from: Borrero-Pérez GH, Vanegas-González MJ (2019) Holothuria (Mertensiothuria) viridiaurantia sp. nov. (Holothuriida, Holothuriidae), a new sea cucumber from the Eastern Pacific Ocean revealed by morphology and DNA barcoding. ZooKeys 893: 1-19. https://doi.org/10.3897/zookeys.893.36013
Figure 1 Maps showing the geographic distribution of Holothuria (Mertensiothuria) viridiaurantia sp. nov. A, B Detailed distribution in Chocó, Colombia; the triangle indicates the only locality were H. (Mertensiothuria) hilla specimens were collected C Wider distribution of H. (M.) viridiaurantia sp. nov. showing other localities from Panama and Mexico where the species have been identified through photographs, and the locality in India from where the GenBank sequence KP780302 originated. Colombian localities are represented by exact coordinates, and all other localities were derived from specific localities mentioned in the literature.
Supplementary material 1 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
: Data type: species data
Figures 7- 8 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 7- 8 7AAtheta vaga (Heer), habitus 7BAtheta vaga, aedeagus, lateral view 7CAtheta fanatica Casey, aedeagus, lateral view 7DAtheta fanatica, spermatheca 8Myllaena infuscata Kraatz 8A habitus 8B aedeagus, ventral view 8C aedeagus, lateral view 8D spermatheca 8B–D V. Assing. Scale bars: 1.0 mm (7A), 0.2 mm (7B–D), 0.5 mm (8A), 0.1 mm (8B–D).
Figures 5- 6 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 5- 6 5Tachyporus atriceps Stephens 5A habitus 5B elytral chaetotaxy (re-drawn from Assing and Schülke 2012) and pattern variability 5C aedeagus, ventral view, M. Schülke, modified. Abbreviations: OD outer discal row, MD middle discal row, ID inner discal row, S sutural row 6Amischa decipiens (Sharp) 6A habitus 6B spermatheca, re-drawn from Muona (1990). Scale bars: 1.0 mm (5A; 6A), 0.5 mm (5B, C), 0.1 mm (6B).
Figures 46-48 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 46-48 46Ceutorhynchus inaffectatus Gyllenhal 46A habitus, L. Borowiec 46B aedeagus 47Ceutorhynchus mutabilis Dietz, habitus 48Exomias trichopterus (Gautier des Cottes) 48A male habitus, L. Borowiec 48B female habitus, L. Borowiec. Scale bars: 1.0 mm (46A; 47; 48), 0.5 mm (46B).
Figures 38- 39 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 38- 39 38Cis boleti (Scopoli) 38A habitus, L. Borowiec 38B pronotum 39ACis glabratus Mellié, female habitus, L. Borowiec 39BCis glabratus, male head and pronotum 39CCis glabratus, aedeagus 39DCis levettei (Casey), aedeagus. Scale bars: 0.5 mm (38A, B; 39A, B), 0.2 mm (39C, D).
Figures 44- 45 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 44- 45 44Notaris scirpi (Fabricius), habitus, L. Borowiec 45Centrinopus helvinus Casey, habitus. Scale bar: 2.0 mm (44), 1.0 mm (45).
Figures 36- 37 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 36- 37 36Orthoperus corticalis (Redtenbacher) 36A habitus, L. Borowiec 36B male metaventrite 36C aedeagus, ventral view 36D aedeagus, lateral view 37Litargus connexus (Geoffroy) 37A habitus, L. Borowiec 37B antenna. Scale bars: 0.25 mm (36A), 0.2 mm (36B–D), 0.5 mm (37A), 0.2 mm (37B).
Figures 33- 34 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 33- 34 33Chilocorus renipustulatus (Scriba) 33A habitus, L. Borowiec 33B median lobe (penis guide) and parameres, ventral view 33C penis (sipho), tip in lateral view 34Nephus bisignatus (Boheman) 34A habitus, S. Karjalainen 34B median lobe (penis guide) and parameres, lateral view 34C penis (sipho), tip in lateral view. Scale bars: 1.0 mm (33A), 0.5 mm (33B; 34A), 0.2 mm (33C; 34B), 0.1 mm (34C).
Figures 30- 31 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 30- 31 30Acylomus ergoti Casey 30A male metatibia, ventral view 30B aedeagus, dorsal view 30C tegmen, dorsal view 30D tegmen, lateral view 31Olibrus liquidus Erichson, habitus, L. Borowiec. Scale bars: 0.2 mm (30A–D), 1.0 mm (31).
Figures 22-24 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 22-24 22Contacyphon fuscescens (Klausnitzer) 22A aedeagus, dorsal plate 22B aedeagus, ventral plate 22C male tergite 8 and 9 23Contacyphon kongsbergensis (Munster) 23A aedeagus, dorsal plate 23B aedeagus, ventral plate 23C male sternite 9 and accessory sclerite 24Contacyphon obscurellus (Klausnitzer) 24A aedeagus, dorsal plate 24B aedeagus, ventral plate 24C male sternite 9 24D male tergite 9. Scale bars: 0.2 mm (22A–C; 23A–C), 0.5 mm (24A–D).
Figures 20- 21 from: Pentinsaari M, Anderson R, Borowiec L, Bouchard P, Brunke A, Douglas H, Smith A, Hebert P (2019) DNA barcodes reveal 63 overlooked species of Canadian beetles (Insecta, Coleoptera). ZooKeys 894: 53-150. https://doi.org/10.3897/zookeys.894.37862
Figures 20- 21 20Calyptomerus dubius (Marsham) 20A habitus, L. Borowiec 20B aedeagus, dorsal view 21Clambus simsoni Blackburn 21A habitus 21B aedeagus, ventral view. Scale bars: 0.5 mm (20A; 21A), 0.2 mm (20B), 0.1 mm (21B).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.