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486 results for “Curation”
AusInverTraits: a curated trait database for Australian invertebrates
<p>The AusInverTraits database is a curated and standardised database of traits data for Australia's invertebrate taxa gathered from primary sources. It is developed in collaboration with <a href="https://austraits.org/">AusTraits</a>.</p> <p> </p> <p><strong>Contributors</strong></p> <p>The database development is jointly led by Dr Payal Bal (University of Melbourne) and Dr Jessica R. Marsh (Charles Darwin University).</p> <p> </p> <p><strong>Data contributors (individuals)</strong>: xxxx</p> <p><strong>Data contributors (institutions)</strong>: xxx</p> <p><strong>Data processing</strong>: Payal Bal, Jane Ogilvie, Junn Kitt Foon, Jess Marsh, Elizabeth Wenk, Sophie Yang</p>
PPARγ-bla dataset curated and enriched using the Enalos tools and Enalos KNIME nodes for machine learning analysis (SCENARIOS project)
<p>A curated and enriched dataset for PPARγ-bla, intended for in silico model development, was obtained from PubChem BioAssay under the numeric identifier AID 743194 using Enalos tools and Enalos KNIME nodes. This dataset specifically utilizes compounds from the Tox21 10K chemical library that underwent screening against the PPARγ-bla HEK293H cell line. The cell line contains a beta-lactamase reporter gene, and all the information was extracted from PubChem Bioassay ID 743194 using Enalos tools and Enalos KNIME nodes. The original bioassay, consisting of 6587 compounds, assessed the antagonist activity of small molecules and classified them as 'active', 'inactive' or 'inconsistent' based on their AC50 (potency) score. The curated PPARγ dataset comprises 1230 compounds selected from the original bioassay and enriched with 777 molecular descriptors extracted from their 2D structure using EnalosMold2 KNIME nodes.</p>
OrganoIDNetData: A Curated Cell Life Imaging Dataset of Immune-enriched Pancreatic Cancer Organoids with Pre-trained AI Models
<p>OrganoIDNetData encompasses 180 images with 34113 organoids of human and murine Pancreatic Ductal Adenocarcinoma co-cultured with immune cells.</p> <p><strong>For further information and to cite this dataset, please refer to:</strong></p> <p>Kulkarni, A., Ferreira, N., Scodellaro, R. <em>et al.</em> A Curated Cell Life Imaging Dataset of Immune-enriched Pancreatic Cancer Organoids with Pre-trained AI Models. <em>Sci Data</em> <strong>11</strong>, 820 (2024). https://doi.org/10.1038/s41597-024-03631-3</p>
Curated RNA Sequencing Data for Zebrafish (Danio rerio) snoRNA Expression Analysis
Open the record for dataset details and reuse information.
Figure 6 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 6 - Number of individuals by preservation method stored at MNA. Dried specimens percentage in orange (~80%), ethanol in blue (~15%), and frozen in green (~5%)
Figure 7 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 7 - Video of the 3D model of O. echinulata (MNA 2644); Catalogue number, latitude (DD), longitude (DD), depth and event date as described in the section "Dataset description", GenBank Accession number, Barcode Index Number from the Bold system and the complete COI sequence in FASTA format. Video available at: https://youtu.be/Sq6au-_CHy0
Figure 2 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 2 - Overview map depicting the wideness of the area containing the sampling stations of the dataset. Areas in red are shown in detail in figures 3, 4 and 5.
Figure 5 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 5 - Map with the sampling sites in the Falkland Islands (Islas Malvinas) and Bransfield Strait
Figure 1 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 1 - Flowchart depicting major steps in dataset development and publishing, from sample collection to the production of a virtual collection of the museum's 3D vouchers.
Figure 4 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 4 - Highlight of the sampling sites in Terra Nova Bay (a sampling locations from 1988 to 2004 b sampling locations from 2009 to 2014), Cape Hallett (c) and Cape Adare (d) areas.
Figure 8 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 8 - Video of the 3D model of O. antarctica (MNA 7784); Catalogue number, latitude (DD), longitude (DD), depth and event date as described in the section "Dataset description"; GenBank Accession number, the Barcode Index Number from the Bold system and the complete COI sequence in FASTA format. Video available at: https://youtu.be/Z72GryamWZY
Figure 9 from: Cecchetto M, Alvaro MC, Ghiglione C, Guzzi A, Mazzoli C, Piazza P, Schiaparelli S (2017) Distributional records of Antarctic and sub-Antarctic Ophiuroidea from samples curated at the Italian National Antarctic Museum (MNA): check-list update of the group in the Terra Nova Bay area (Ross Sea) and launch of the MNA 3D model 'virtual gallery'. ZooKeys 705: 61-79. https://doi.org/10.3897/zookeys.705.13712
Figure 9 - a The A. agassizii (MNA 7368) specimen used for photogrammetry documented immediately after collecting b screenshot of the 3D model based on photogrammetry at the mesh reconstruction stage (the marker showed as model background is available as supplementary material in Porter et al. 2016); Catalogue number, latitude (DD), longitude (DD), depth and event date as described in the section "Dataset description"; GenBank Accession number, the Barcode Index Number from the Bold system and the complete COI sequence in FASTA format.
Curated Pernoctaciones Tenerife
<p>Curated Pernoctaciones Tenerife</p>
Figure 3 in EphemBrazil: a curated online database and dashboard to explore the distribution of mayflies (Insecta: Ephemeroptera) from Brazil
Figure 3 Interactive map view of distributional records in Brazil with different filters applied: (A) family Baetidae; (B) genus Camelobaetidius Demoulin; (C) species Camelobaetidius billi Thomas & Dominique; (D) Camelobaetidius billi Thomas & Dominique records in Atlantic Forest biome; (E) Detailed view of a single record of Camelobaetidius billi Thomas & Dominique.
Linked collectors and determiners for: Re-curation of the Myriapoda collection in the Lyman Entomological Museum.
Natural history specimen data linked to collectors and determiners held within, "Re-curation of the Myriapoda collection in the Lyman Entomological Museum". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/282f4a0d-94cd-48e4-b560-4913885d5c8e">https://bionomia.net/dataset/282f4a0d-94cd-48e4-b560-4913885d5c8e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/282f4a0d-94cd-48e4-b560-4913885d5c8e">https://gbif.org/dataset/282f4a0d-94cd-48e4-b560-4913885d5c8e</a>. Formatted as a Frictionless Data package.
Bilateral cultural agreements, 1919-1980, curated from the electronic World Treaty Index
<p>This dataset, curated on the basis of a subset of data in the electronic World Treaty Index (worldtreatyindex.com) or eWTI [1], offers metadata on all known bilateral cultural agreements signed between 1919-1980. It includes several additions and corrections to the eWTI data, as well as new labels. Prepared as part of the research project <a href="http://www.benjamingmartin.com/cultintsoc">The Culture of International Society</a>, this dataset is analyzed in an article tentatively entitled “The Rise of the Cultural Treaty.”</p> <p>Discussion of my choices for inclusion in this dataset is online at: <a href="https://github.com/humlab/the_culture_of_international_relations/wiki/eWTI-Notes:-Selection-Decisions-Log-2020,-2021">https://github.com/humlab/the_culture_of_international_relations/wiki/eWTI-Notes:-Selection-Decisions-Log-2020,-2021</a>.<br> </p> <p>[1] Paul Poast, Michael James Bommarito and Daniel Martin Katz, ‘The Electronic World Treaty Index: Collecting the Population of International Agreements in the 20th Century’, SSRN Scholarly Paper (Rochester, NY: Social Science Research Network, February 15, 2010), online at: <a href="http://papers.ssrn.com/abstract=2652760">http://papers.ssrn.com/abstract=2652760</a>.</p>
Figures 9-15 from: Gates M, Buffington M (2011) Description of two techniques to increase efficiency in processing and curating minute arthropods, with special reference to parasitic Hymenoptera. Journal of Hymenoptera Research 22: 133-140. https://doi.org/10.3897/jhr.22.2099
Figures 9-15 - 9 Collection labels are removed from the sample. 10 Specimens in ethanol are poured into the filter. 11 Complete vacuum pump system. 12 Filter under vacuum. 13 Specimens dried after running the pump. 14 Specimens removed from the filter onto a mounting board. 15 Glue boards are arranged.
Figures 1-8 from: Gates M, Buffington M (2011) Description of two techniques to increase efficiency in processing and curating minute arthropods, with special reference to parasitic Hymenoptera. Journal of Hymenoptera Research 22: 133-140. https://doi.org/10.3897/jhr.22.2099
Figures 1-8 - 1 Miscellaneous vials for specimen storage 2 Ilford antistatic cloth. 3 Kinetronics antistatic brush. 4 Zerostat 3 product box. 5 Zerostat 3 gun with cap. 6 USNM ½ unit tray with plastic specimen boxes. 7 Specimens attracted to box lid by static. 8 Specimens at bottom of box lid after static dissipated.
Figure 8 from: Mantle B, LaSalle J, Fisher N (2012) Whole-drawer imaging for digital management and curation of a large entomological collection. ZooKeys 209: 147-163. https://doi.org/10.3897/zookeys.209.3169
Figure 8 - Whole-drawer image of dragonfly specimens used for a pilot study investigating the error associated with direct and indirect measures of morphological characters, such as wing length.
Figure 5 from: Mantle B, LaSalle J, Fisher N (2012) Whole-drawer imaging for digital management and curation of a large entomological collection. ZooKeys 209: 147-163. https://doi.org/10.3897/zookeys.209.3169
Figure 5 - Inset from previous figure (Figure 4). Label data attached to small specimens is often almost completely readable. Therefore, specimen metadata could be extracted and digitised using specialised character recognition software.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.